RLG00000024289

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005742
Physical Location & Seq
Forward (+)
34129609 .. 34132303
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024289

Sequence Viewer

Length: 549 bp
ATGCCCGAGCTGTTGTTGCTTCAGCTGCCGCACTGGTGCGCCGCCCAATCGCCGACAGGGCTATTGCCTGACATTTACGGGTGGGCCTCACCCACCAAAACGGTTCCGTTTCCCCAGACCAAGAACATGAAGAAAGCAGAAGACAGTAGCTTAATGAAGCTCAGGCTCATAATCGGCAAGCTACAAAAGGGTCTCTCAGTGCTAACCGCAAGAGGACCTCCTGATCATCGTTGCAGAGGCTGTGATGAAAAACTGGAGGTAGCAGCAATTGTACCAGAAGATGTAAAGGAAGGACATTTTGCAGTGTTTGCAGTTGTGGGTAAGGAGACAACGAGGTTTGTGACTAAGCTAGAGTCCTTGAATGACCCTGCACTTATGGAATTGCTAGAGCAAGCCAAGGACGAGTATGGGTTCCAACAGAAAGGTGCTCTTAAAGTTCATTGCAGGCCTGAGGAATTGCACTCAATTCTTGAAAACTGCAGGATGGAGCAAAGTAGATTTGATGCTGCATCTAATGATAATTTTCTTACCGCCCTGGAAGGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

183

Amino Acids

20.33

Weight (kDa)

5.97

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 91 - 157 3.3e-13 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 29, 42, 207, 531
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 2 cut(s) 273, 545
AfiI CCNNNNNNNGG 1 cut(s) 540
AgsI TTSAA 2 cut(s) 361, 473
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 6 cut(s) 10, 25, 150, 160, 181, 349
AluI AGCT 6 cut(s) 10, 25, 150, 160, 181, 349
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 197, 320
AlwNI CAGNNNCTG 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 2 cut(s) 84, 446
ApeKI GCWGC 3 cut(s) 25, 263, 506
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 84, 215
AsuHPI GGTGA 1 cut(s) 81
AvaI CYCGRG 1 cut(s) 5
AvaII GGWCC 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 3 cut(s) 12, 275, 493
BccI CCATC 1 cut(s) 478
BciT130I CCWGG 1 cut(s) 536
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 197, 320
BfaI CTAG 3 cut(s) 350, 386, 547
BfmI CTRYAG 1 cut(s) 478
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 26, 29, 42, 264, 507
BlsI GCNGC 5 cut(s) 27, 30, 43, 265, 508
Bme1390I CCNGG 1 cut(s) 536
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 2 cut(s) 84, 215
BmiI GGNNCC 2 cut(s) 105, 413
BmrFI CCNGG 1 cut(s) 536
BmsI GCATC 2 cut(s) 493, 518
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 396, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 540
Bse1I ACTGG 2 cut(s) 38, 258
Bse21I CCTNAGG 1 cut(s) 450
Bse3DI GCAATG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 396, 534
BseGI GGATG 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 540
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 3 cut(s) 175, 210, 441
BseNI ACTGG 2 cut(s) 38, 258
BseXI GCAGC 3 cut(s) 12, 275, 493
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 86, 448
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 540
BsmAI GTCTC 2 cut(s) 197, 320
BsnI GGCC 2 cut(s) 86, 448
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 4 cut(s) 29, 42, 207, 531
BspANI GGCC 2 cut(s) 86, 448
BspCNI CTCAG 3 cut(s) 174, 209, 442
BspLI GGNNCC 2 cut(s) 105, 413
BspMAI CTGCAG 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 2 cut(s) 38, 258
BssECI CCNNGG 2 cut(s) 396, 534
BssMI GATC 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 103, 146
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 179, 393, 446
BstDEI CTNAG 4 cut(s) 161, 196, 345, 450
BstF5I GGATG 1 cut(s) 489
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 197, 320
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 4 cut(s) 16, 25, 58, 308
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 534
BstSFI CTRYAG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 12, 275, 493
BstV2I GAAGAC 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 2 cut(s) 86, 448
BtsCI GGATG 1 cut(s) 489
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 3 cut(s) 31, 204, 309
Cac8I GCNNGC 3 cut(s) 179, 393, 446
CaiI CAGNNNCTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 84, 215
Csp6I GTAC 2 cut(s) 272, 544
CviAII CATG 1 cut(s) 127
CviQI GTAC 2 cut(s) 272, 544
DdeI CTNAG 4 cut(s) 161, 196, 345, 450
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 5
Eco81I CCTNAGG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 130
FaiI YATR 4 cut(s) 128, 170, 377, 408
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FatI CATG 1 cut(s) 126
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 5 cut(s) 26, 29, 42, 264, 507
FokI GGATG 1 cut(s) 496
Fsp4HI GCNGC 5 cut(s) 26, 29, 42, 264, 507
FspBI CTAG 3 cut(s) 350, 386, 547
GlaI GCGC 1 cut(s) 40
GluI GCNGC 5 cut(s) 26, 29, 42, 264, 507
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 86, 448
HhaI GCGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 221, 470
HpyAV CCTTC 2 cut(s) 284, 533
HpyCH4III ACNGT 2 cut(s) 103, 146
HpyCH4V TGCA 8 cut(s) 234, 302, 311, 371, 444, 460, 480, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 25, 58, 308
HpyF3I CTNAG 4 cut(s) 161, 196, 345, 450
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 3 cut(s) 12, 275, 493
LweI GCATC 2 cut(s) 493, 518
MaeI CTAG 3 cut(s) 350, 386, 547
MaeIII GTNAC 1 cut(s) 340
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 3 cut(s) 142, 152, 290
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 267, 380, 455, 465, 520
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 7 cut(s) 97, 206, 228, 230, 250, 327, 445
MseI TTAA 2 cut(s) 152, 432
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 536
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 4 cut(s) 16, 25, 58, 308
NdeII GATC 1 cut(s) 223
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 105, 413
NmuCI GTSAC 1 cut(s) 340
PceI AGGCCT 1 cut(s) 448
PkrI GCNGC 5 cut(s) 27, 30, 43, 265, 508
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 105, 413
PspPI GGNCC 2 cut(s) 84, 215
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 1 cut(s) 482
PstNI CAGNNNCTG 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 273, 545
RsaNI GTAC 2 cut(s) 272, 544
SaqAI TTAA 2 cut(s) 152, 432
SatI GCNGC 5 cut(s) 26, 29, 42, 264, 507
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 2 cut(s) 84, 215
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 536
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 2 cut(s) 493, 518
SfcI CTRYAG 1 cut(s) 478
SinI GGWCC 1 cut(s) 215
Sse9I AATT 5 cut(s) 267, 380, 455, 465, 520
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 4 cut(s) 29, 42, 207, 531
SspMI CTAG 3 cut(s) 350, 386, 547
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 103, 146
TasI AATT 5 cut(s) 267, 380, 455, 465, 520
TauI GCSGC 2 cut(s) 31, 44
Tru1I TTAA 2 cut(s) 152, 432
Tru9I TTAA 2 cut(s) 152, 432
TscAI CASTG 3 cut(s) 38, 204, 309
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 25, 263, 506
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 4 cut(s) 143, 170, 261, 428
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 3 cut(s) 38, 204, 309
VpaK11BI GGWCC 1 cut(s) 215
XspI CTAG 3 cut(s) 350, 386, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.