Rh3BG181300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005742
Physical Location & Seq
Reverse (-)
15948346 .. 15949240
895 bp
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UTR
Exon/CDS
Intron
Rh3BG181300.1

Sequence Viewer

Length: 402 bp
ATGAAGCTCAGGCTCATAATCGAGAAGCTACAAAAGGGCCTCTTGCTCTTAGCAACCAAAGGTCCTCACGATGATCAGCACGATGAATTCGATGAAGACTTGGACGTAGCGAAGATGGTACCCGAGGATGTAAAGGAAGGATATTTTGCAGTGTTTGCAGTGAAGGGTAAGGAGCCAAAGAGGTTTGTGATTAAGCTAGAGTCCTTGAATAACCCTGCATTTTTGAAATTACTAGAGCAGGCCAAGGAAGAATATGGTTTTCAACAGAAAGGTGCTCTTGAAGTTCCATGCAGACCTGAGGATTTGCATAAGATTCTGGAGAACAGGAGGGAGAAGAGTAGGACCAGTGCTACATGTAATAATACTAATAGTAATATCCCTACCCTTATAGAAGGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

5.96

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 39 - 106 4.1e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 4 cut(s) 208, 226, 263, 281
AluBI AGCT 3 cut(s) 7, 28, 196
AluI AGCT 3 cut(s) 7, 28, 196
Alw21I GWGCWC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 37, 240
ApoI RAATTY 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 118
AspS9I GGNCC 3 cut(s) 37, 62, 342
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 62, 342
AxyI CCTNAGG 1 cut(s) 297
BanI GGYRCC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 277
BccI CCATC 1 cut(s) 109
BciVI GTATCC 1 cut(s) 389
BclI TGATCA 1 cut(s) 73
BfaI CTAG 3 cut(s) 197, 233, 400
BfuI GTATCC 1 cut(s) 389
Bme18I GGWCC 2 cut(s) 62, 342
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 3 cut(s) 37, 62, 342
BmiI GGNNCC 2 cut(s) 120, 174
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 123, 243
Bse1I ACTGG 1 cut(s) 345
Bse21I CCTNAGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 123, 243
BseGI GGATG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 22, 288
BseNI ACTGG 1 cut(s) 345
BshFI GGCC 2 cut(s) 39, 242
BshNI GGYRCC 1 cut(s) 118
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 122
BsnI GGCC 2 cut(s) 39, 242
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 2 cut(s) 39, 242
BspCNI CTCAG 2 cut(s) 21, 289
BspLI GGNNCC 2 cut(s) 120, 174
BspT107I GGYRCC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 123, 243
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 8, 49, 297
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 2 cut(s) 39, 242
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 2 cut(s) 156, 165
BtsIMutI CAGTG 3 cut(s) 156, 165, 352
Cac8I GCNNGC 1 cut(s) 240
Cfr13I GGNCC 3 cut(s) 37, 62, 342
Csp6I GTAC 1 cut(s) 119
CviAII CATG 2 cut(s) 288, 354
CviJI RGCY 7 cut(s) 7, 13, 28, 39, 175, 196, 242
CviKI_1 RGCY 7 cut(s) 7, 13, 28, 39, 175, 196, 242
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 3 cut(s) 8, 49, 297
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 62, 342
Eco81I CCTNAGG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 2 cut(s) 37, 62
EcoRI GAATTC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 291, 357
FaiI YATR 6 cut(s) 17, 255, 289, 309, 355, 389
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 261, 293
FatI CATG 2 cut(s) 287, 353
FbaI TGATCA 1 cut(s) 73
FokI GGATG 1 cut(s) 140
FspBI CTAG 3 cut(s) 197, 233, 400
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 2 cut(s) 39, 242
Hin1II CATG 2 cut(s) 291, 357
HinfI GANTC 2 cut(s) 200, 313
Hpy188III TCNNGA 4 cut(s) 22, 68, 278, 317
HpyAV CCTTC 3 cut(s) 131, 157, 386
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 5 cut(s) 149, 158, 218, 291, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 8, 49, 297
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 2 cut(s) 291, 357
KpnI GGTACC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 224, 228, 302, 309, 310, 358
MaeI CTAG 3 cut(s) 197, 233, 400
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 107, 124, 260, 346
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 2 cut(s) 86, 227
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 6 cut(s) 50, 75, 118, 174, 292, 321
MseI TTAA 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 73
NlaIII CATG 2 cut(s) 291, 357
NlaIV GGNNCC 2 cut(s) 120, 174
NspI RCATGY 1 cut(s) 357
PciI ACATGT 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 313
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 62
PscI ACATGT 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 120, 174
PspPI GGNCC 3 cut(s) 37, 62, 342
PspPPI RGGWCCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 3 cut(s) 37, 62, 342
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 277
SetI ASST 8 cut(s) 9, 30, 64, 108, 185, 198, 274, 298
SinI GGWCC 2 cut(s) 62, 342
Sse9I AATT 2 cut(s) 86, 227
SspMI CTAG 3 cut(s) 197, 233, 400
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 21, 90
TasI AATT 2 cut(s) 86, 227
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 3 cut(s) 156, 165, 352
TspDTI ATGAA 3 cut(s) 17, 99, 108
TspRI CASTG 3 cut(s) 156, 165, 352
VpaK11BI GGWCC 2 cut(s) 62, 342
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 357
XspI CTAG 3 cut(s) 197, 233, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.