Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

3417940 .. 3419892

Gene Structure 1953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGATTCGTTGTGTAGCGAGTAGAAAAACCCTAGCCGGCTTGAAGGAGACATCATCGAGGCTATTGAGGATCAGAGGGATTCAGACTTTTACGCTTCCTGATCTTCCTTACGATTATGGCGCATTGGAACCGGCCATTAGTGGAGAGATCATGCAGATTCATCACCAGAAGCATCACCAGGCTTATGTTACTAATTACAATAATGCTCTTGAGCAGCTTGATCAAGCTGTGAACAAGGGAGATGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGTGAAGGTGGTGGAGAGCCACCAAAAGGATCTCTTGGTAGTGCCATTGACGCTCACTTTGGCTCCCTTGAAGGTCTGGTGAAAAAGATGAGTGCTGAGGGTGCTGCAGTGCAAGGCTCAGGATGGGTGTGGCTCGGACTAGACAAAGAACTGAAGAAGCTAGTTGTTGACACAACTGCCAATCAGGATCCATTAGTGACAAAAGGAGGAAGCTTGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAGTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0010227 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0090567 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

231

Amino Acids

25.44

Weight (kDa)

8.47

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	30 - 111	8.8e-35	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	121 - 224	3.9e-36	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	1 cut(s)	556
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	4 cut(s)	80, 376, 521, 534
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	2 cut(s)	512, 650
AfaI	GTAC	2 cut(s)	558, 605
AfiI	CCNNNNNNNGG	2 cut(s)	365, 566
AgsI	TTSAA	3 cut(s)	46, 286, 410
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	220, 230, 499, 552
AluI	AGCT	4 cut(s)	220, 230, 499, 552
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	4 cut(s)	80, 376, 521, 534
AoxI	GGCC	2 cut(s)	135, 617
ApeKI	GCWGC	2 cut(s)	217, 443
ApoI	RAATTY	1 cut(s)	281
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp718I	GGTACC	1 cut(s)	556
AspLEI	GCGC	2 cut(s)	125, 275
AsuHPI	GGTGA	3 cut(s)	158, 170, 430
BamHI	GGATCC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	229, 430
BccI	CCATC	2 cut(s)	284, 456
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	2 cut(s)	223, 648
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	3 cut(s)	35, 479, 500
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	2 cut(s)	218, 444
BlsI	GCNGC	2 cut(s)	219, 445
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	4 cut(s)	132, 403, 528, 558
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	184, 235
Bpu10I	CCTNAGC	2 cut(s)	435, 457
BpuEI	CTTGAG	1 cut(s)	233
BsaXI	ACNNNNNCTCC	4 cut(s)	285, 315, 386, 416
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 566
Bse118I	RCCGGY	2 cut(s)	38, 133
Bse1I	ACTGG	2 cut(s)	339, 659
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	365, 566
BseMII	CTCAG	3 cut(s)	426, 471, 612
BseNI	ACTGG	2 cut(s)	339, 659
BseXI	GCAGC	2 cut(s)	229, 430
BshFI	GGCC	2 cut(s)	137, 619
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	2 cut(s)	39, 134
BslI	CCNNNNNNNGG	2 cut(s)	365, 566
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	137, 619
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp143I	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	137, 619
BspCNI	CTCAG	3 cut(s)	427, 470, 613
BspLI	GGNNCC	4 cut(s)	132, 403, 528, 558
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	4 cut(s)	80, 376, 521, 534
BspT107I	GGYRCC	1 cut(s)	556
BsrFI	RCCGGY	2 cut(s)	38, 133
BsrI	ACTGG	2 cut(s)	339, 659
BssAI	RCCGGY	2 cut(s)	38, 133
BssMI	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	40, 588, 667
BstDEI	CTNAG	3 cut(s)	435, 457, 621
BstF5I	GGATG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	125, 275
BstKTI	GATC	7 cut(s)	75, 106, 153, 226, 371, 529, 651
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 440
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	229, 430
BstX2I	RGATCY	2 cut(s)	368, 526
BstYI	RGATCY	2 cut(s)	368, 526
BsuRI	GGCC	2 cut(s)	137, 619
BtsCI	GGATG	1 cut(s)	467
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	252, 346, 453
Cac8I	GCNNGC	3 cut(s)	40, 588, 667
CfoI	GCGC	2 cut(s)	125, 275
Cfr10I	RCCGGY	2 cut(s)	38, 133
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	557, 604
CviAII	CATG	2 cut(s)	154, 299
CviQI	GTAC	2 cut(s)	557, 604
DdeI	CTNAG	3 cut(s)	435, 457, 621
DpnI	GATC	7 cut(s)	74, 105, 152, 225, 370, 528, 650
DpnII	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
EaeI	YGGCCR	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	619
Eco57I	CTGAAG	2 cut(s)	512, 650
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	157, 302
FaiI	YATR	8 cut(s)	120, 155, 189, 300, 572, 640, 663, 678
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	2 cut(s)	153, 298
FbaI	TGATCA	2 cut(s)	223, 648
Fnu4HI	GCNGC	2 cut(s)	218, 444
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	218, 444
FspBI	CTAG	3 cut(s)	35, 479, 500
GlaI	GCGC	2 cut(s)	124, 274
GluI	GCNGC	2 cut(s)	218, 444
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	137, 619
HapII	CCGG	2 cut(s)	39, 134
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	2 cut(s)	125, 275
Hin1II	CATG	2 cut(s)	157, 302
Hin6I	GCGC	2 cut(s)	123, 273
HinP1I	GCGC	2 cut(s)	123, 273
HincII	GTYRAC	2 cut(s)	304, 508
HindII	GTYRAC	2 cut(s)	304, 508
HindIII	AAGCTT	1 cut(s)	550
HinfI	GANTC	3 cut(s)	7, 82, 160
HpaII	CCGG	2 cut(s)	39, 134
HphI	GGTGA	3 cut(s)	158, 170, 430
Hpy166II	GTNNAC	3 cut(s)	235, 304, 508
Hpy188I	TCNGA	4 cut(s)	77, 87, 476, 630
Hpy188III	TCNNGA	5 cut(s)	101, 212, 319, 459, 524
Hpy8I	GTNNAC	3 cut(s)	235, 304, 508
HpyAV	CCTTC	5 cut(s)	40, 338, 345, 404, 676
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	157, 268, 446, 451, 601, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 440
HpyF3I	CTNAG	3 cut(s)	435, 457, 621
Hsp92II	CATG	2 cut(s)	157, 302
HspAI	GCGC	2 cut(s)	123, 273
KpnI	GGTACC	1 cut(s)	560
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Ksp22I	TGATCA	2 cut(s)	223, 648
Kzo9I	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
LmnI	GCTCC	3 cut(s)	337, 407, 583
Lsp1109I	GCAGC	2 cut(s)	229, 430
LweI	GCATC	2 cut(s)	184, 235
MaeI	CTAG	3 cut(s)	35, 479, 500
MaeIII	GTNAC	2 cut(s)	190, 535
MalI	GATC	7 cut(s)	74, 105, 152, 225, 370, 528, 650
MboI	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
MboII	GAAGA	4 cut(s)	98, 334, 505, 643
MflI	RGATCY	2 cut(s)	368, 526
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	2 cut(s)	196, 281
MnlI	CCTC	9 cut(s)	54, 63, 71, 287, 430, 539, 570, 609, 664
MroNI	GCCGGC	1 cut(s)	38
MseI	TTAA	1 cut(s)	261
MspI	CCGG	2 cut(s)	39, 134
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	389, 440
NaeI	GCCGGC	1 cut(s)	40
NdeII	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	157, 302
NlaIV	GGNNCC	4 cut(s)	132, 403, 528, 558
NmuCI	GTSAC	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	619
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	7, 82, 160
PkrI	GCNGC	2 cut(s)	219, 445
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	132, 403, 528, 558
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	368, 526
RsaI	GTAC	2 cut(s)	558, 605
RsaNI	GTAC	2 cut(s)	557, 604
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	218, 444
Sau3AI	GATC	7 cut(s)	72, 103, 150, 223, 368, 526, 648
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	2 cut(s)	184, 235
SfcI	CTRYAG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	196, 281
SseBI	AGGCCT	1 cut(s)	619
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	3 cut(s)	35, 479, 500
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	59, 311
TasI	AATT	2 cut(s)	196, 281
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	3 cut(s)	7, 82, 160
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	3 cut(s)	259, 346, 453
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	2 cut(s)	217, 443
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	259, 346, 453
XapI	RAATTY	1 cut(s)	281
XspI	CTAG	3 cut(s)	35, 479, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.