Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

22894501 .. 22897109

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTACAAATTCAATCCTTCCACAACCCCGATATCGTCTCCATTAAAAATAAAAATTAAAAACTTAAGGCCCAAGATATCTGGCCCATACCACAGATTTGCCCCTACCAACTCCAACAAGTCTCACTCTCGCTCGTCACATTTCTCTCGCCTTTCTCTCTCACTCTCTCTCTCCTCTCAGTTCATCGCAAACAGCATTTCCATGGCTCTCCGAGCTCTCGTGGCCAAGAAAGCCCTCCGATCAGGGTTCCAGAGCAAGCCCAGAATCCTTGCCCATTCTCGCGGCCTGCAGACCTTCTCGCTCCCCGACCTTCCCTACGACTATGACGCTCTGGAGCCTGCAATCAGCGGCGAGATCATGGAGCTCCACCACAAAAAGCACCACCAGGCTTACGTCACGAACTACAACAAAGCTCTCGAGCAGCTCCAGGACGCCATCGGAAAGGGCGACGCTGCTGCCGTTGTTAAGTTGCAGAGCGCCATCAAGTTCAATGGCGGAGGTCATGTCAACCACTCGATTTTCTGGAAGAATCTGACTCCGATTAGTCAAGGTGGAGGTGAGTCCCCTCATAGCAACCTGGGCTGGGCCATTGACATGAGTTTTGGTTCTTTTGATGCATTGGTGCAAAAGATCAACACAGAAGGCGCTGCGTTGCAGGGTTCTGGATGGGTGTGGCTTGCTTTAGACAAAGAGTTGAAGAAACTTGTGGTTGAAACCACTGCAAATCAGGACCCATTGGTTACTAAAGGAGCATCTTTGGTTCCATTGCTTGGTATTGACGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTGAGACCAGAGTATCTGAAGAACATTTGGAAAGTCATCAACTGGAAGTATGCCAGTGAAGTGTACGAGAAAGAAAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

300

Amino Acids

33.3

Weight (kDa)

9.61

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccII	CGCG	1 cut(s)	282
AciI	CCGC	3 cut(s)	282, 348, 495
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	854
AcyI	GRCGYC	1 cut(s)	432
AfaI	GTAC	4 cut(s)	5, 797, 809, 881
AfiI	CCNNNNNNNGG	2 cut(s)	583, 770
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	13, 490, 697, 713
AjnI	CCWGG	3 cut(s)	384, 426, 576
AluBI	AGCT	4 cut(s)	215, 364, 413, 424
AluI	AGCT	4 cut(s)	215, 364, 413, 424
Alw21I	GWGCWC	2 cut(s)	217, 366
Alw26I	GTCTC	3 cut(s)	42, 126, 814
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	5 cut(s)	68, 82, 222, 283, 585
ApeKI	GCWGC	4 cut(s)	421, 452, 455, 647
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AspLEI	GCGC	2 cut(s)	479, 647
AspS9I	GGNCC	4 cut(s)	69, 83, 585, 730
AsuHPI	GGTGA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	730
BaeI	ACNNNNGTAYC	2 cut(s)	812, 845
BalI	TGGCCA	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	217, 366
BauI	CACGAG	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	217, 366
BbvI	GCAGC	4 cut(s)	433, 439, 442, 634
BccI	CCATC	3 cut(s)	443, 488, 660
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	3 cut(s)	386, 428, 578
BcoDI	GTCTC	3 cut(s)	42, 126, 814
BfmI	CTRYAG	1 cut(s)	287
BfoI	RGCGCY	2 cut(s)	480, 648
BfrI	CTTAAG	1 cut(s)	64
BisI	GCNGC	6 cut(s)	283, 349, 422, 453, 456, 648
BlsI	GCNGC	6 cut(s)	284, 350, 423, 454, 457, 649
Bme1390I	CCNGG	3 cut(s)	386, 428, 578
Bme18I	GGWCC	1 cut(s)	730
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	4 cut(s)	69, 83, 585, 730
BmiI	GGNNCC	4 cut(s)	248, 336, 732, 762
BmrFI	CCNGG	3 cut(s)	386, 428, 578
BmsI	GCATC	2 cut(s)	604, 761
BpmI	CTGGAG	2 cut(s)	353, 410
BsaHI	GRCGYC	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	814
BsaJI	CCNNGG	2 cut(s)	201, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 779, 809
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 770
Bse1I	ACTGG	2 cut(s)	863, 870
Bse3DI	GCAATG	1 cut(s)	764
BseBI	CCWGG	3 cut(s)	386, 428, 578
BseDI	CCNNGG	2 cut(s)	201, 577
BseGI	GGATG	1 cut(s)	671
BseLI	CCNNNNNNNGG	2 cut(s)	583, 770
BseMI	GCAATG	1 cut(s)	764
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	863, 870
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	433, 439, 442, 634
BseYI	CCCAGC	1 cut(s)	582
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	5 cut(s)	70, 84, 224, 285, 587
BsiHKAI	GWGCWC	2 cut(s)	217, 366
BsiHKCI	CYCGRG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	583, 770
BsmAI	GTCTC	3 cut(s)	42, 126, 814
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	5 cut(s)	70, 84, 224, 285, 587
Bso31I	GGTCTC	1 cut(s)	814
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	2 cut(s)	217, 366
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	239, 354, 630
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	3 cut(s)	282, 348, 495
BspANI	GGCC	5 cut(s)	70, 84, 224, 285, 587
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	248, 336, 732, 762
BspMAI	CTGCAG	1 cut(s)	291
BspTI	CTTAAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	814
BsrDI	GCAATG	1 cut(s)	764
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	863, 870
BssECI	CCNNGG	2 cut(s)	201, 577
BssMI	GATC	3 cut(s)	239, 354, 630
BssNI	GRCGYC	1 cut(s)	432
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	3 cut(s)	386, 428, 578
Bst4CI	ACNGT	1 cut(s)	807
BstACI	GRCGYC	1 cut(s)	432
BstAFI	CTTAAG	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	5 cut(s)	257, 287, 339, 678, 792
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	2 cut(s)	480, 648
BstHHI	GCGC	2 cut(s)	479, 647
BstKTI	GATC	3 cut(s)	242, 357, 633
BstMAI	GTCTC	3 cut(s)	42, 126, 814
BstMBI	GATC	3 cut(s)	239, 354, 630
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 221, 230, 579
BstNI	CCWGG	3 cut(s)	386, 428, 578
BstNSI	RCATGY	1 cut(s)	794
BstSCI	CCNGG	3 cut(s)	384, 426, 576
BstSFI	CTRYAG	1 cut(s)	287
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	4 cut(s)	433, 439, 442, 634
BsuRI	GGCC	5 cut(s)	70, 84, 224, 285, 587
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	717, 877
Cac8I	GCNNGC	5 cut(s)	257, 287, 339, 678, 792
CfoI	GCGC	2 cut(s)	479, 647
Cfr13I	GGNCC	4 cut(s)	69, 83, 585, 730
CseI	GACGC	3 cut(s)	335, 440, 458
Csp6I	GTAC	4 cut(s)	4, 796, 808, 880
CviAII	CATG	5 cut(s)	202, 358, 503, 595, 791
CviQI	GTAC	4 cut(s)	4, 796, 808, 880
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	241, 356, 632
DpnII	GATC	3 cut(s)	239, 354, 630
EaeI	YGGCCR	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	510
Ecl136II	GAGCTC	2 cut(s)	215, 364
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	217, 366
Eco31I	GGTCTC	1 cut(s)	814
Eco32I	GATATC	2 cut(s)	33, 78
Eco47I	GGWCC	1 cut(s)	730
Eco53kI	GAGCTC	2 cut(s)	215, 364
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	416
EcoICRI	GAGCTC	2 cut(s)	215, 364
EcoO109I	RGGNCCY	1 cut(s)	730
EcoRII	CCWGG	3 cut(s)	384, 426, 576
EcoRV	GATATC	2 cut(s)	33, 78
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	619
EcoT38I	GRGCYC	2 cut(s)	217, 366
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	5 cut(s)	205, 361, 506, 598, 794
FaiI	YATR	9 cut(s)	88, 203, 324, 359, 504, 570, 596, 792, 867
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	201, 357, 502, 594, 790
Fnu4HI	GCNGC	6 cut(s)	283, 349, 422, 453, 456, 648
FokI	GGATG	1 cut(s)	678
FriOI	GRGCYC	2 cut(s)	217, 366
Fsp4HI	GCNGC	6 cut(s)	283, 349, 422, 453, 456, 648
GlaI	GCGC	2 cut(s)	478, 646
GluI	GCNGC	6 cut(s)	283, 349, 422, 453, 456, 648
GsaI	CCCAGC	1 cut(s)	586
GsuI	CTGGAG	2 cut(s)	353, 410
HaeII	RGCGCY	2 cut(s)	480, 648
HaeIII	GGCC	5 cut(s)	70, 84, 224, 285, 587
HgaI	GACGC	3 cut(s)	335, 440, 458
HhaI	GCGC	2 cut(s)	479, 647
Hin1I	GRCGYC	1 cut(s)	432
Hin1II	CATG	5 cut(s)	205, 361, 506, 598, 794
Hin6I	GCGC	2 cut(s)	477, 645
HinP1I	GCGC	2 cut(s)	477, 645
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	4 cut(s)	264, 529, 535, 560
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	508, 880
Hpy188I	TCNGA	6 cut(s)	212, 239, 440, 534, 540, 834
Hpy188III	TCNNGA	7 cut(s)	250, 332, 397, 416, 523, 663, 728
Hpy8I	GTNNAC	2 cut(s)	508, 880
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	4 cut(s)	27, 304, 320, 635
HpyCH4III	ACNGT	1 cut(s)	807
HpyCH4IV	ACGT	2 cut(s)	393, 780
HpyCH4V	TGCA	7 cut(s)	289, 341, 472, 617, 625, 655, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 221, 230, 579
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	393, 780
Hsp92I	GRCGYC	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	205, 361, 506, 598, 794
HspAI	GCGC	2 cut(s)	477, 645
Kzo9I	GATC	3 cut(s)	239, 354, 630
LmnI	GCTCC	7 cut(s)	306, 334, 361, 369, 429, 749, 787
Lsp1109I	GCAGC	4 cut(s)	433, 439, 442, 634
LweI	GCATC	2 cut(s)	604, 761
MaeII	ACGT	2 cut(s)	393, 780
MaeIII	GTNAC	3 cut(s)	135, 394, 739
MalI	GATC	3 cut(s)	241, 356, 632
MboI	GATC	3 cut(s)	239, 354, 630
MboII	GAAGA	3 cut(s)	538, 709, 847
MhlI	GDGCHC	2 cut(s)	217, 366
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	2 cut(s)	8, 54
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	529, 569
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	184, 245, 491, 548, 576
Mox20I	TGGCCA	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	4 cut(s)	44, 57, 65, 465
MslI	CAYNNNNRTG	2 cut(s)	200, 593
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	64
MspR9I	CCNGG	3 cut(s)	386, 428, 578
MvaI	CCWGG	3 cut(s)	386, 428, 578
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	212, 221, 230, 579
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	239, 354, 630
NlaIII	CATG	5 cut(s)	205, 361, 506, 598, 794
NlaIV	GGNNCC	4 cut(s)	248, 336, 732, 762
NmuCI	GTSAC	2 cut(s)	135, 394
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	794
PaeI	GCATGC	1 cut(s)	794
PaeR7I	CTCGAG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 456
PfeI	GAWTC	2 cut(s)	264, 529
PflMI	CCANNNNNTGG	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	6 cut(s)	284, 350, 423, 454, 457, 649
PleI	GAGTC	2 cut(s)	529, 568
PpsI	GAGTC	2 cut(s)	529, 568
PpuMI	RGGWCCY	1 cut(s)	730
Psp124BI	GAGCTC	2 cut(s)	217, 366
Psp5II	RGGWCCY	1 cut(s)	730
Psp6I	CCWGG	3 cut(s)	384, 426, 576
PspFI	CCCAGC	1 cut(s)	582
PspGI	CCWGG	3 cut(s)	384, 426, 576
PspN4I	GGNNCC	4 cut(s)	248, 336, 732, 762
PspPI	GGNCC	4 cut(s)	69, 83, 585, 730
PspPPI	RGGWCCY	1 cut(s)	730
PstI	CTGCAG	1 cut(s)	291
RsaI	GTAC	4 cut(s)	5, 797, 809, 881
RsaNI	GTAC	4 cut(s)	4, 796, 808, 880
RseI	CAYNNNNRTG	2 cut(s)	200, 593
SacI	GAGCTC	2 cut(s)	217, 366
SaqAI	TTAA	4 cut(s)	44, 57, 65, 465
SatI	GCNGC	6 cut(s)	283, 349, 422, 453, 456, 648
Sau3AI	GATC	3 cut(s)	239, 354, 630
Sau96I	GGNCC	4 cut(s)	69, 83, 585, 730
SchI	GAGTC	2 cut(s)	529, 569
ScrFI	CCNGG	3 cut(s)	386, 428, 578
SduI	GDGCHC	2 cut(s)	217, 366
SfaNI	GCATC	2 cut(s)	604, 761
SfcI	CTRYAG	1 cut(s)	287
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	730
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	2 cut(s)	200, 593
SmlI	CTYRAG	2 cut(s)	64, 416
SmoI	CTYRAG	2 cut(s)	64, 416
SphI	GCATGC	1 cut(s)	794
Sse9I	AATT	2 cut(s)	8, 54
SsiI	CCGC	3 cut(s)	282, 348, 495
SstI	GAGCTC	2 cut(s)	217, 366
StyD4I	CCNGG	3 cut(s)	384, 426, 576
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	807
TaiI	ACGT	2 cut(s)	396, 783
TaqI	TCGA	2 cut(s)	417, 515
TasI	AATT	2 cut(s)	8, 54
TatI	WGTACW	2 cut(s)	3, 807
TauI	GCSGC	2 cut(s)	285, 351
TfiI	GAWTC	2 cut(s)	264, 529
Tru1I	TTAA	4 cut(s)	44, 57, 65, 465
Tru9I	TTAA	4 cut(s)	44, 57, 65, 465
TscAI	CASTG	2 cut(s)	724, 877
TseFI	GTSAC	2 cut(s)	135, 394
TseI	GCWGC	4 cut(s)	421, 452, 455, 647
Tsp45I	GTSAC	2 cut(s)	135, 394
TspDTI	ATGAA	1 cut(s)	172
TspRI	CASTG	2 cut(s)	724, 877
Van91I	CCANNNNNTGG	1 cut(s)	770
Vha464I	CTTAAG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	794
XhoI	CTCGAG	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.