Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

60887951 .. 60891693

Gene Structure 3743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59601

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCTACGAGCTCTCGCGGCCAGGAAATCCCTAGCCGGATCAGGTTTCCAGAGAATCCTCGGCGCGCGTGGACTGCAGACGTTCTCTCTCCCCGACCTTCCGTACGACTACGGCGCTCTCGAGCCGGCGATCAGCGCCGAGATCATGCAACTCCACCACCAGAAGCACCACCAGGCTTACATCACCAACTACAACAAGGCTTTGGAGCAGCTCGACGCCGCAATCGCCAAGGGCGACGCTTCTGCCGTCGTTAAGTTGCAGAGCGCCATTAAATTCAACGGCGGAGGTCATGTCAACCACTCGATTTTCTGGAATAATCTGAGTCCTGTTAAAGAAGGAGGTGGCGAGCCCCCTCATAGTTCCCTGGGCTGGGCTATTGACCAAAGTTTTGGTTCTTTTGACGCATTAATCACAAAGATGAATGCAGAAGGTGCTGGCTTGCAGGGTTCTGGATGGGTGTGGCTGGCTCTAGACAAAGAATTGAAGAAGGTTGTGGTTGAAACCACTGCAAATCAGGACCCATTGGTTACCAAAGGAGCAAGTTTAGTGCCCTTGCTTGGCATTGATGTTTGGGAGCACGCGTACTACTTACAGTACAAGAATGTGAGACCAGATTATCTTAAGAACATATGGAAGGTCATCAATTGGAAGTATGCCAGTCAAGTGTACGAGAAAGAAAGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

229

Amino Acids

25.16

Weight (kDa)

7.9

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	28 - 109	3.5e-34	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	121 - 222	8.2e-37	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	20, 68, 70, 584
AciI	CCGC	3 cut(s)	20, 222, 285
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	4 cut(s)	107, 587, 599, 671
AfiI	CCNNNNNNNGG	3 cut(s)	372, 373, 560
AflII	CTTAAG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	280, 487, 503
AjnI	CCWGG	3 cut(s)	23, 174, 366
AluBI	AGCT	2 cut(s)	14, 214
AluI	AGCT	2 cut(s)	14, 214
Alw21I	GWGCWC	2 cut(s)	16, 582
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AseI	ATTAAT	1 cut(s)	410
AspLEI	GCGC	6 cut(s)	68, 70, 119, 140, 269, 686
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	2 cut(s)	16, 354
Bbv12I	GWGCWC	2 cut(s)	16, 582
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	450
BceAI	ACGGC	3 cut(s)	130, 233, 298
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	3 cut(s)	25, 176, 368
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	2 cut(s)	35, 473
BfmI	CTRYAG	1 cut(s)	77
BfoI	RGCGCY	4 cut(s)	120, 141, 270, 687
BfrI	CTTAAG	1 cut(s)	623
BisI	GCNGC	3 cut(s)	21, 212, 222
BlsI	GCNGC	3 cut(s)	22, 213, 223
Bme1390I	CCNGG	3 cut(s)	25, 176, 368
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	3 cut(s)	25, 176, 368
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	4 cut(s)	61, 231, 366, 367
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 569, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 373, 560
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	660
BseBI	CCWGG	3 cut(s)	25, 176, 368
BseDI	CCNNGG	4 cut(s)	61, 231, 366, 367
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	372, 373, 560
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	660
BsePI	GCGCGC	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	372
Bsh1236I	CGCG	4 cut(s)	20, 68, 70, 584
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	16, 582
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	39, 128
BsiWI	CGTACG	1 cut(s)	105
BslI	CCNNNNNNNGG	3 cut(s)	372, 373, 560
BsmAI	GTCTC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	4 cut(s)	16, 354, 555, 582
Bsp143I	GATC	3 cut(s)	41, 132, 144
BspACI	CCGC	3 cut(s)	20, 222, 285
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	4 cut(s)	20, 68, 70, 584
BspLI	GGNNCC	1 cut(s)	522
BspMAI	CTGCAG	1 cut(s)	81
BspPI	GGATC	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	61, 231, 366, 367
BssHII	GCGCGC	1 cut(s)	66
BssMI	GATC	3 cut(s)	41, 132, 144
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	3 cut(s)	25, 176, 368
Bst4CI	ACNGT	1 cut(s)	597
BstACI	GRCGYC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	7 cut(s)	68, 129, 350, 439, 443, 468, 582
BstDEI	CTNAG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	4 cut(s)	20, 68, 70, 584
BstH2I	RGCGCY	4 cut(s)	120, 141, 270, 687
BstHHI	GCGC	6 cut(s)	68, 70, 119, 140, 269, 686
BstKTI	GATC	3 cut(s)	44, 135, 147
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	3 cut(s)	41, 132, 144
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 76, 137, 227, 434
BstNI	CCWGG	3 cut(s)	25, 176, 368
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	23, 174, 366
BstSFI	CTRYAG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	4 cut(s)	20, 68, 70, 584
BstV1I	GCAGC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	461
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	7 cut(s)	68, 129, 350, 439, 443, 468, 582
CfoI	GCGC	6 cut(s)	68, 70, 119, 140, 269, 686
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	520
CseI	GACGC	3 cut(s)	227, 248, 413
Csp6I	GTAC	4 cut(s)	106, 586, 598, 670
CviAII	CATG	2 cut(s)	148, 293
CviQI	GTAC	4 cut(s)	106, 586, 598, 670
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	3 cut(s)	43, 134, 146
DpnII	GATC	3 cut(s)	41, 132, 144
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	16, 354
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	3 cut(s)	23, 174, 366
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	2 cut(s)	16, 354
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	151, 296
FaiI	YATR	6 cut(s)	149, 294, 360, 632, 634, 657
FatI	CATG	2 cut(s)	147, 292
FauNDI	CATATG	1 cut(s)	632
Fnu4HI	GCNGC	3 cut(s)	21, 212, 222
FokI	GGATG	1 cut(s)	468
FriOI	GRGCYC	2 cut(s)	16, 354
Fsp4HI	GCNGC	3 cut(s)	21, 212, 222
FspBI	CTAG	2 cut(s)	35, 473
GlaI	GCGC	6 cut(s)	67, 69, 118, 139, 268, 685
GluI	GCNGC	3 cut(s)	21, 212, 222
GsaI	CCCAGC	1 cut(s)	376
HaeII	RGCGCY	4 cut(s)	120, 141, 270, 687
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	2 cut(s)	39, 128
HgaI	GACGC	3 cut(s)	227, 248, 413
HhaI	GCGC	6 cut(s)	68, 70, 119, 140, 269, 686
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	151, 296
Hin6I	GCGC	6 cut(s)	66, 68, 117, 138, 267, 684
HinP1I	GCGC	6 cut(s)	66, 68, 117, 138, 267, 684
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	57, 325
HpaII	CCGG	2 cut(s)	39, 128
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	74, 298, 670
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	6 cut(s)	52, 122, 313, 453, 473, 518
Hpy8I	GTNNAC	3 cut(s)	74, 298, 670
Hpy99I	CGWCG	3 cut(s)	221, 242, 254
HpyAV	CCTTC	5 cut(s)	110, 332, 425, 484, 631
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	6 cut(s)	79, 151, 262, 428, 445, 512
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 76, 137, 227, 434
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	151, 296
HspAI	GCGC	6 cut(s)	66, 68, 117, 138, 267, 684
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	41, 132, 144
LmnI	GCTCC	3 cut(s)	208, 539, 577
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	35, 473
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	3 cut(s)	43, 134, 146
MboI	GATC	3 cut(s)	41, 132, 144
MboII	GAAGA	1 cut(s)	499
MfeI	CAATTG	1 cut(s)	646
MhlI	GDGCHC	4 cut(s)	16, 354, 555, 582
MluCI	AATT	3 cut(s)	275, 482, 646
MluI	ACGCGT	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	4 cut(s)	71, 281, 335, 366
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	5 cut(s)	255, 273, 333, 410, 624
MslI	CAYNNNNRTG	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	2 cut(s)	39, 128
MspR9I	CCNGG	3 cut(s)	25, 176, 368
MunI	CAATTG	1 cut(s)	646
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	3 cut(s)	25, 176, 368
MvnI	CGCG	4 cut(s)	20, 68, 70, 584
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 76, 137, 227, 434
NaeI	GCCGGC	1 cut(s)	129
NdeI	CATATG	1 cut(s)	632
NdeII	GATC	3 cut(s)	41, 132, 144
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	151, 296
NlaIV	GGNNCC	1 cut(s)	522
NmeAIII	GCCGAG	2 cut(s)	42, 166
PaeR7I	CTCGAG	1 cut(s)	122
PasI	CCCWGGG	1 cut(s)	367
PauI	GCGCGC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 234, 246
PctI	GAATGC	1 cut(s)	430
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	57
Pfl23II	CGTACG	1 cut(s)	105
PkrI	GCNGC	3 cut(s)	22, 213, 223
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PpuMI	RGGWCCY	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	3 cut(s)	23, 174, 366
PspEI	GGTNACC	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	3 cut(s)	23, 174, 366
PspLI	CGTACG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	520
PspPPI	RGGWCCY	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	81
PteI	GCGCGC	1 cut(s)	66
RsaI	GTAC	4 cut(s)	107, 587, 599, 671
RsaNI	GTAC	4 cut(s)	106, 586, 598, 670
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	5 cut(s)	255, 273, 333, 410, 624
SatI	GCNGC	3 cut(s)	21, 212, 222
Sau3AI	GATC	3 cut(s)	41, 132, 144
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	25, 176, 368
SduI	GDGCHC	4 cut(s)	16, 354, 555, 582
SfcI	CTRYAG	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	520
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	122, 623
SmoI	CTYRAG	2 cut(s)	122, 623
Sse9I	AATT	3 cut(s)	275, 482, 646
SsiI	CCGC	3 cut(s)	20, 222, 285
SspMI	CTAG	2 cut(s)	35, 473
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	3 cut(s)	23, 174, 366
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	123, 216, 305
TasI	AATT	3 cut(s)	275, 482, 646
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	2 cut(s)	23, 224
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	5 cut(s)	255, 273, 333, 410, 624
Tru9I	TTAA	5 cut(s)	255, 273, 333, 410, 624
TscAI	CASTG	1 cut(s)	514
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	514
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	410
XapI	RAATTY	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	2 cut(s)	35, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.