Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

19631827 .. 19634543

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCTCCGAGCGCTCGCGGCCAGAAAATCCCTCACCGGATTAGGTTTCCAGAACCTTCTCGGCGCGCGTGGACTGCAGACGTTCTCTCTCCCCGACCTCCCCTACGACTACGGCGCTCTCGAGCCGGCGATTAGCGCCGAGATCATGCAAATCCACCACCAGAAGCACCACCAGACTTACATCACCAACTACAACAAGGCTCTCGAGCAGCTGGACGCCGCGATTTCCAAGGGCGACGCCTCCGCCGTCGTGAAGCTGCAGAGCGCCATCAAATTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAATAACCTGGCTCCTGTTAATCAAGGAGGTGGTGAGGCCCCTCATGCTTCCCTGGGCTGGGCTATTGACCAAAGCTTTGGTTCTTTTGATGCGTTAATCGCAAAGGTCAATGCAGAAGGTGCTGGGTTGCAGGGATCTGGATGGGTGTGGCTGGCTCTAGACAAAGAACTGAAGAAGCTTGTGGTTGAAACTACGGCAAATCAGGACCCATTGGTTACCAAAGGAGCAAGTTTAGTGCCTTTGCTTGGCATTGATGTTTGGGAGCACGCATACTACTTACAGTACAAGAATGTGAGACCAGATTATCTAAAGAATATATGGAAGGTCATCAATTGGAAGTATGCCAGTAAAGTGTACGAGAAAGAAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

230

Amino Acids

25.1

Weight (kDa)

7.9

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	28 - 109	1.6e-34	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	121 - 222	4.4e-37	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	20, 68, 70, 224
AciI	CCGC	4 cut(s)	20, 222, 246, 285
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	2 cut(s)	219, 240
AfaI	GTAC	2 cut(s)	599, 671
AfeI	AGCGCT	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	372, 373, 560
AgsI	TTSAA	2 cut(s)	280, 503
AjnI	CCWGG	2 cut(s)	321, 366
AluBI	AGCT	4 cut(s)	214, 259, 390, 493
AluI	AGCT	4 cut(s)	214, 259, 390, 493
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	1 cut(s)	457
Ama87I	CYCGRG	2 cut(s)	122, 206
Aor51HI	AGCGCT	1 cut(s)	15
AoxI	GGCC	2 cut(s)	21, 351
ApeKI	GCWGC	2 cut(s)	211, 259
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	6 cut(s)	16, 68, 70, 119, 140, 269
AspS9I	GGNCC	2 cut(s)	352, 520
AsuHPI	GGTGA	3 cut(s)	28, 178, 359
AvaI	CYCGRG	2 cut(s)	122, 206
AvaII	GGWCC	1 cut(s)	520
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	223, 246
BccI	CCATC	2 cut(s)	278, 450
BceAI	ACGGC	4 cut(s)	130, 233, 298, 525
BciT130I	CCWGG	2 cut(s)	323, 368
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	2 cut(s)	77, 260
BfoI	RGCGCY	4 cut(s)	17, 120, 141, 270
BisI	GCNGC	4 cut(s)	21, 212, 222, 260
BlsI	GCNGC	4 cut(s)	22, 213, 223, 261
Bme1390I	CCNGG	2 cut(s)	323, 368
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	2 cut(s)	122, 206
BmgT120I	GGNCC	2 cut(s)	352, 520
BmiI	GGNNCC	3 cut(s)	327, 354, 522
BmrFI	CCNGG	2 cut(s)	323, 368
BmsI	GCATC	1 cut(s)	394
BsaHI	GRCGYC	2 cut(s)	219, 240
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	231, 366, 367
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 373, 560
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	660
BseBI	CCWGG	2 cut(s)	323, 368
BseDI	CCNNGG	3 cut(s)	231, 366, 367
BseGI	GGATG	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	372, 373, 560
BseNI	ACTGG	1 cut(s)	660
BsePI	GCGCGC	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	223, 246
BseYI	CCCAGC	2 cut(s)	372, 437
Bsh1236I	CGCG	4 cut(s)	20, 68, 70, 224
BshFI	GGCC	2 cut(s)	23, 353
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	2 cut(s)	122, 206
BsiSI	CCGG	2 cut(s)	39, 128
BslI	CCNNNNNNNGG	3 cut(s)	372, 373, 560
BsmAI	GTCTC	1 cut(s)	604
BsnI	GGCC	2 cut(s)	23, 353
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	2 cut(s)	122, 206
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	2 cut(s)	144, 449
BspACI	CCGC	4 cut(s)	20, 222, 246, 285
BspANI	GGCC	2 cut(s)	23, 353
BspFNI	CGCG	4 cut(s)	20, 68, 70, 224
BspLI	GGNNCC	3 cut(s)	327, 354, 522
BspMAI	CTGCAG	2 cut(s)	81, 264
BspPI	GGATC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	660
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	3 cut(s)	231, 366, 367
BssHII	GCGCGC	1 cut(s)	66
BssMI	GATC	2 cut(s)	144, 449
BssNI	GRCGYC	2 cut(s)	219, 240
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	323, 368
Bst4CI	ACNGT	1 cut(s)	597
BstACI	GRCGYC	2 cut(s)	219, 240
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	18, 68, 129, 468, 582
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	461
BstFNI	CGCG	4 cut(s)	20, 68, 70, 224
BstH2I	RGCGCY	4 cut(s)	17, 120, 141, 270
BstHHI	GCGC	6 cut(s)	16, 68, 70, 119, 140, 269
BstKTI	GATC	2 cut(s)	147, 452
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	2 cut(s)	144, 449
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 20, 76, 137, 359, 413, 434
BstNI	CCWGG	2 cut(s)	323, 368
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	321, 366
BstSFI	CTRYAG	2 cut(s)	77, 260
BstUI	CGCG	4 cut(s)	20, 68, 70, 224
BstV1I	GCAGC	2 cut(s)	223, 246
BstX2I	RGATCY	1 cut(s)	449
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	23, 353
BtsCI	GGATG	1 cut(s)	461
Cac8I	GCNNGC	5 cut(s)	18, 68, 129, 468, 582
CfoI	GCGC	6 cut(s)	16, 68, 70, 119, 140, 269
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	352, 520
CseI	GACGC	2 cut(s)	227, 248
Csp6I	GTAC	2 cut(s)	598, 670
CviAII	CATG	3 cut(s)	148, 293, 359
CviQI	GTAC	2 cut(s)	598, 670
DpnI	GATC	2 cut(s)	146, 451
DpnII	GATC	2 cut(s)	144, 449
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	2 cut(s)	235, 300
Eco130I	CCWWGG	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	604
Eco47I	GGWCC	1 cut(s)	520
Eco47III	AGCGCT	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	2 cut(s)	122, 206
Eco91I	GGTNACC	1 cut(s)	529
EcoO109I	RGGNCCY	2 cut(s)	352, 520
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	2 cut(s)	321, 366
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	151, 296, 362
FaiI	YATR	7 cut(s)	149, 294, 360, 586, 632, 634, 657
FatI	CATG	3 cut(s)	147, 292, 358
Fnu4HI	GCNGC	4 cut(s)	21, 212, 222, 260
FokI	GGATG	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	21, 212, 222, 260
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	6 cut(s)	15, 67, 69, 118, 139, 268
GluI	GCNGC	4 cut(s)	21, 212, 222, 260
GsaI	CCCAGC	2 cut(s)	376, 441
HaeII	RGCGCY	4 cut(s)	17, 120, 141, 270
HaeIII	GGCC	2 cut(s)	23, 353
HapII	CCGG	2 cut(s)	39, 128
HgaI	GACGC	2 cut(s)	227, 248
HhaI	GCGC	6 cut(s)	16, 68, 70, 119, 140, 269
Hin1I	GRCGYC	2 cut(s)	219, 240
Hin1II	CATG	3 cut(s)	151, 296, 362
Hin6I	GCGC	6 cut(s)	14, 66, 68, 117, 138, 267
HinP1I	GCGC	6 cut(s)	14, 66, 68, 117, 138, 267
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	388, 491
HpaII	CCGG	2 cut(s)	39, 128
HphI	GGTGA	3 cut(s)	28, 178, 359
Hpy166II	GTNNAC	3 cut(s)	74, 298, 670
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	8 cut(s)	52, 122, 206, 253, 313, 453, 473, 518
Hpy8I	GTNNAC	3 cut(s)	74, 298, 670
Hpy99I	CGWCG	2 cut(s)	242, 254
HpyAV	CCTTC	3 cut(s)	68, 425, 631
HpyCH4III	ACNGT	1 cut(s)	597
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	79, 151, 262, 428, 445
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 20, 76, 137, 359, 413, 434
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	2 cut(s)	219, 240
Hsp92II	CATG	3 cut(s)	151, 296, 362
HspAI	GCGC	6 cut(s)	14, 66, 68, 117, 138, 267
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	144, 449
LmnI	GCTCC	3 cut(s)	331, 539, 577
Lsp1109I	GCAGC	2 cut(s)	223, 246
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	2 cut(s)	146, 451
MboI	GATC	2 cut(s)	144, 449
MboII	GAAGA	1 cut(s)	499
MfeI	CAATTG	1 cut(s)	646
MflI	RGATCY	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	3 cut(s)	275, 306, 646
MnlI	CCTC	7 cut(s)	44, 110, 253, 281, 335, 343, 366
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	2 cut(s)	333, 410
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	2 cut(s)	39, 128
MspR9I	CCNGG	2 cut(s)	323, 368
MunI	CAATTG	1 cut(s)	646
MvaI	CCWGG	2 cut(s)	323, 368
MvnI	CGCG	4 cut(s)	20, 68, 70, 224
MwoI	GCNNNNNNNGC	7 cut(s)	11, 20, 76, 137, 359, 413, 434
NaeI	GCCGGC	1 cut(s)	129
NdeII	GATC	2 cut(s)	144, 449
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	151, 296, 362
NlaIV	GGNNCC	3 cut(s)	327, 354, 522
NmeAIII	GCCGAG	2 cut(s)	42, 166
PaeR7I	CTCGAG	2 cut(s)	122, 206
PasI	CCCWGGG	1 cut(s)	367
PauI	GCGCGC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 246
PdiI	GCCGGC	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	22, 213, 223, 261
PpuMI	RGGWCCY	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	520
Psp6I	CCWGG	2 cut(s)	321, 366
PspEI	GGTNACC	1 cut(s)	529
PspFI	CCCAGC	2 cut(s)	372, 437
PspGI	CCWGG	2 cut(s)	321, 366
PspN4I	GGNNCC	3 cut(s)	327, 354, 522
PspPI	GGNCC	2 cut(s)	352, 520
PspPPI	RGGWCCY	1 cut(s)	520
PstI	CTGCAG	2 cut(s)	81, 264
PsuI	RGATCY	1 cut(s)	449
PteI	GCGCGC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	2 cut(s)	599, 671
RsaNI	GTAC	2 cut(s)	598, 670
SaqAI	TTAA	2 cut(s)	333, 410
SatI	GCNGC	4 cut(s)	21, 212, 222, 260
Sau3AI	GATC	2 cut(s)	144, 449
Sau96I	GGNCC	2 cut(s)	352, 520
ScrFI	CCNGG	2 cut(s)	323, 368
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	77, 260
Sfr274I	CTCGAG	2 cut(s)	122, 206
SinI	GGWCC	1 cut(s)	520
SlaI	CTCGAG	2 cut(s)	122, 206
SmlI	CTYRAG	2 cut(s)	122, 206
SmoI	CTYRAG	2 cut(s)	122, 206
Sse9I	AATT	3 cut(s)	275, 306, 646
SsiI	CCGC	4 cut(s)	20, 222, 246, 285
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	321, 366
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	597
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	123, 207
TasI	AATT	3 cut(s)	275, 306, 646
TatI	WGTACW	1 cut(s)	597
TauI	GCSGC	2 cut(s)	23, 224
Tru1I	TTAA	2 cut(s)	333, 410
Tru9I	TTAA	2 cut(s)	333, 410
TseI	GCWGC	2 cut(s)	211, 259
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	472
XhoI	CTCGAG	2 cut(s)	122, 206
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.