Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

27101437 .. 27105204

Gene Structure 3768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G262400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATAGCCCAAGGTATCTGGGCACACGATCTGGGCACACGGGTCGTTTTTCCCAGGACCGCACCCAGATTCGCACCTACAATATATATTTTATACGCACGCTCTCACCTCACTCAAGTCTTCTCTCACTCTCTCTCTGCCCTCTCCTTTCTCGTCCTCACTCAAGTCCAGCAACACACTTCGATGGCTCTTCGATCTCTCGTGGCCAGGAAATCCCTTGGATTGGGGTTTCAGAGCAAAGCCAAAATCCTCGCCGTAGGTTCTACAGCTCATTCCCGTGGCTTTCAAACCTTCTCGCTTCCCGACCTTCCGTACGACTATGGCGCTCTCGAGCCTGCAATTAGTGGCGAGATCATGCAGCTCCATCACCAGAAGCACCACCAGACTTACGTCACCAACTACAACAAAGCTCTTGAGCAGCTCCACGACGCCATCGCCAAGGGTGATGCTGCTGCTGTTGTTAAATTGCAGAGCGCCATCAAGTTCAATGGCGGAGGTCATGTCAACCACTCGATTTTCTGGAAGAATCTTACTCCTGTTGGTCAAGGAGGTGGTGAGCCCCCTCATGGTTCCCTGGGCTGGGCTATTGACACAAATTTTGGTTCTATGGAAGCATTAGTGCAAAAGATCAATGCAGAAGGCGCTGCTTTGCAGGGTTCTGGATGGGTGTGGCTGGCTCTAGACAAAGAGTTGAAGAAACTTGTGGTTGAAACCACTGCAAATCAGGACCCATTGGTTACCAAAGGACCAACTTTAGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGTATAAGAATGTGAGGCCAGATTATCTCAAGAACATATGGAAAGTAATCAACTGGAAGTATGCCAGCGAAGTGTACGAGAAAGAAAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

299

Amino Acids

32.96

Weight (kDa)

9.17

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AciI	CCGC	2 cut(s)	60, 492
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	3 cut(s)	314, 794, 878
AfiI	CCNNNNNNNGG	5 cut(s)	223, 566, 579, 580, 767
AgsI	TTSAA	4 cut(s)	287, 487, 694, 710
AjnI	CCWGG	3 cut(s)	53, 206, 573
AluBI	AGCT	4 cut(s)	269, 361, 410, 421
AluI	AGCT	4 cut(s)	269, 361, 410, 421
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	204, 818
ApeKI	GCWGC	5 cut(s)	358, 418, 449, 452, 644
ApoI	RAATTY	1 cut(s)	595
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AspLEI	GCGC	3 cut(s)	326, 476, 644
AspS9I	GGNCC	3 cut(s)	57, 727, 746
AsuHPI	GGTGA	5 cut(s)	98, 359, 385, 455, 566
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	3 cut(s)	57, 727, 746
BaeGI	GKGCMC	2 cut(s)	25, 38
BalI	TGGCCA	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	561
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	5 cut(s)	370, 430, 436, 439, 631
BccI	CCATC	5 cut(s)	178, 372, 440, 485, 657
BceAI	ACGGC	1 cut(s)	239
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	3 cut(s)	55, 208, 575
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	264
BfoI	RGCGCY	3 cut(s)	327, 477, 645
BisI	GCNGC	5 cut(s)	359, 419, 450, 453, 645
BlsI	GCNGC	5 cut(s)	360, 420, 451, 454, 646
Bme1390I	CCNGG	3 cut(s)	55, 208, 575
Bme18I	GGWCC	3 cut(s)	57, 727, 746
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	57, 727, 746
BmiI	GGNNCC	2 cut(s)	571, 729
BmrFI	CCNGG	3 cut(s)	55, 208, 575
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	112
BpuEI	CTTGAG	4 cut(s)	99, 147, 434, 815
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	7 cut(s)	10, 53, 217, 277, 438, 573, 574
BsaXI	ACNNNNNCTCC	4 cut(s)	486, 516, 776, 806
Bsc4I	CCNNNNNNNGG	5 cut(s)	223, 566, 579, 580, 767
Bse1I	ACTGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	761
BseBI	CCWGG	3 cut(s)	55, 208, 575
BseDI	CCNNGG	7 cut(s)	10, 53, 217, 277, 438, 573, 574
BseGI	GGATG	1 cut(s)	668
BseLI	CCNNNNNNNGG	5 cut(s)	223, 566, 579, 580, 767
BseMI	GCAATG	1 cut(s)	761
BseNI	ACTGG	1 cut(s)	860
BseSI	GKGCMC	2 cut(s)	25, 38
BseXI	GCAGC	5 cut(s)	370, 430, 436, 439, 631
BseYI	CCCAGC	1 cut(s)	579
BshFI	GGCC	2 cut(s)	206, 820
BsiHKCI	CYCGRG	1 cut(s)	329
BsiWI	CGTACG	1 cut(s)	312
BslI	CCNNNNNNNGG	5 cut(s)	223, 566, 579, 580, 767
BsnI	GGCC	2 cut(s)	206, 820
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	25, 38, 561
Bsp143I	GATC	4 cut(s)	28, 194, 351, 627
BspACI	CCGC	2 cut(s)	60, 492
BspANI	GGCC	2 cut(s)	206, 820
BspLI	GGNNCC	2 cut(s)	571, 729
BspQI	GCTCTTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	761
BsrI	ACTGG	1 cut(s)	860
BssECI	CCNNGG	7 cut(s)	10, 53, 217, 277, 438, 573, 574
BssMI	GATC	4 cut(s)	28, 194, 351, 627
BssNI	GRCGYC	1 cut(s)	429
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	3 cut(s)	10, 217, 438
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	3 cut(s)	55, 208, 575
Bst4CI	ACNGT	1 cut(s)	804
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	5 cut(s)	100, 336, 675, 789, 868
BstDSI	CCRYGG	1 cut(s)	277
BstEII	GGTNACC	1 cut(s)	736
BstF5I	GGATG	1 cut(s)	668
BstH2I	RGCGCY	3 cut(s)	327, 477, 645
BstHHI	GCGC	3 cut(s)	326, 476, 644
BstKTI	GATC	4 cut(s)	31, 197, 354, 630
BstMBI	GATC	4 cut(s)	28, 194, 351, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	3 cut(s)	55, 208, 575
BstNSI	RCATGY	1 cut(s)	791
BstPAI	GACNNNNGTC	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	736
BstSCI	CCNGG	3 cut(s)	53, 206, 573
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	2 cut(s)	25, 38
BstV1I	GCAGC	5 cut(s)	370, 430, 436, 439, 631
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	206, 820
BtgI	CCRYGG	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	668
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	5 cut(s)	100, 336, 675, 789, 868
CfoI	GCGC	3 cut(s)	326, 476, 644
Cfr13I	GGNCC	3 cut(s)	57, 727, 746
CseI	GACGC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	313, 793, 877
CviAII	CATG	4 cut(s)	355, 500, 566, 788
CviQI	GTAC	3 cut(s)	313, 793, 877
DpnI	GATC	4 cut(s)	30, 196, 353, 629
DpnII	GATC	4 cut(s)	28, 194, 351, 627
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	507
Eco130I	CCWWGG	3 cut(s)	10, 217, 438
Eco24I	GRGCYC	1 cut(s)	561
Eco47I	GGWCC	3 cut(s)	57, 727, 746
Eco88I	CYCGRG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	736
EcoO109I	RGGNCCY	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	736
EcoRII	CCWGG	3 cut(s)	53, 206, 573
EcoT14I	CCWWGG	3 cut(s)	10, 217, 438
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	3 cut(s)	10, 217, 438
FaeI	CATG	4 cut(s)	358, 503, 569, 791
FatI	CATG	4 cut(s)	354, 499, 565, 787
FauNDI	CATATG	1 cut(s)	839
Fnu4HI	GCNGC	5 cut(s)	359, 419, 450, 453, 645
FokI	GGATG	1 cut(s)	675
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	5 cut(s)	359, 419, 450, 453, 645
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	3 cut(s)	325, 475, 643
GluI	GCNGC	5 cut(s)	359, 419, 450, 453, 645
GsaI	CCCAGC	1 cut(s)	583
HaeII	RGCGCY	3 cut(s)	327, 477, 645
HaeIII	GGCC	2 cut(s)	206, 820
HgaI	GACGC	1 cut(s)	437
HhaI	GCGC	3 cut(s)	326, 476, 644
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	358, 503, 569, 791
Hin6I	GCGC	3 cut(s)	324, 474, 642
HinP1I	GCGC	3 cut(s)	324, 474, 642
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	2 cut(s)	69, 526
HphI	GGTGA	5 cut(s)	98, 359, 385, 455, 566
Hpy166II	GTNNAC	2 cut(s)	505, 877
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	8 cut(s)	302, 329, 413, 520, 660, 680, 725, 832
Hpy8I	GTNNAC	2 cut(s)	505, 877
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	301, 317, 632
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	7 cut(s)	338, 358, 469, 622, 635, 652, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	358, 503, 569, 791
HspAI	GCGC	3 cut(s)	324, 474, 642
Kzo9I	GATC	4 cut(s)	28, 194, 351, 627
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	3 cut(s)	366, 426, 784
Lsp1109I	GCAGC	5 cut(s)	370, 430, 436, 439, 631
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	391, 736
MalI	GATC	4 cut(s)	30, 196, 353, 629
MboI	GATC	4 cut(s)	28, 194, 351, 627
MboII	GAAGA	4 cut(s)	112, 182, 535, 706
MhlI	GDGCHC	3 cut(s)	25, 38, 561
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	3 cut(s)	339, 464, 595
MluNI	TGGCCA	1 cut(s)	206
MnlI	CCTC	8 cut(s)	119, 152, 167, 260, 488, 542, 573, 810
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	2 cut(s)	182, 276
Msp20I	TGGCCA	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	55, 208, 575
MvaI	CCWGG	3 cut(s)	55, 208, 575
MwoI	GCNNNNNNNGC	1 cut(s)	641
NdeI	CATATG	1 cut(s)	839
NdeII	GATC	4 cut(s)	28, 194, 351, 627
NlaIII	CATG	4 cut(s)	358, 503, 569, 791
NlaIV	GGNNCC	2 cut(s)	571, 729
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	791
PaeI	GCATGC	1 cut(s)	791
PaeR7I	CTCGAG	1 cut(s)	329
PasI	CCCWGGG	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	69, 526
Pfl23II	CGTACG	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	5 cut(s)	360, 420, 451, 454, 646
PpuMI	RGGWCCY	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	3 cut(s)	53, 206, 573
PspEI	GGTNACC	1 cut(s)	736
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	3 cut(s)	53, 206, 573
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	571, 729
PspPI	GGNCC	3 cut(s)	57, 727, 746
PspPPI	RGGWCCY	1 cut(s)	727
RsaI	GTAC	3 cut(s)	314, 794, 878
RsaNI	GTAC	3 cut(s)	313, 793, 877
RseI	CAYNNNNRTG	2 cut(s)	182, 276
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	5 cut(s)	359, 419, 450, 453, 645
Sau3AI	GATC	4 cut(s)	28, 194, 351, 627
Sau96I	GGNCC	3 cut(s)	57, 727, 746
ScrFI	CCNGG	3 cut(s)	55, 208, 575
SduI	GDGCHC	3 cut(s)	25, 38, 561
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	3 cut(s)	57, 727, 746
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	182, 276
SmlI	CTYRAG	5 cut(s)	114, 162, 329, 413, 830
SmoI	CTYRAG	5 cut(s)	114, 162, 329, 413, 830
SphI	GCATGC	1 cut(s)	791
Sse9I	AATT	3 cut(s)	339, 464, 595
SsiI	CCGC	2 cut(s)	60, 492
SspMI	CTAG	1 cut(s)	680
StyD4I	CCNGG	3 cut(s)	53, 206, 573
StyI	CCWWGG	3 cut(s)	10, 217, 438
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	4 cut(s)	182, 193, 330, 512
TasI	AATT	3 cut(s)	339, 464, 595
TfiI	GAWTC	2 cut(s)	69, 526
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	5 cut(s)	358, 418, 449, 452, 644
Tsp45I	GTSAC	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	721
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	3 cut(s)	57, 727, 746
XapI	RAATTY	1 cut(s)	595
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	1 cut(s)	791
XhoI	CTCGAG	1 cut(s)	329
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.