Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003160.1

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

122738 .. 126037

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003160.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggccttgagaactctgagcaggaaaagcctggctggtttaaccagaaatggcagaggaggcttaggcttcgggctcgtcccagtccgtggcctaaagaccttcacgctgccggacctgccctacgactatggggctcttgagccctccattagccgcgagatcatggagatccatcacctgaagcaccacaacacctacgtcgacaacttcaacaaggctctcgacaacctcgaacaggccatggataccggcgactcctccaccgtcgtcaagttgcagagcgcccttaaattcaacggcggaggtcatataaaccactctattttctggaaatgtctggccccggatacggaaggaggaggtgagcctccaaagggttcattgggatgggaaattgacaatcagtttggttccttacaaagtctgaaacagaaaatgatggtggaaggtgctgctttgcaagtttctggttgggtgtggcttgctcttgacaaggatcagaagaagctttcctttaaatgcacagctaatcaggatccactgataattaaaggagcaaattatgttcctctgcttgggatagatgtgtgggagcatgcttactacttgcaggaaaggagatggatctacttgttattggagattttcgtatcggtgacccgatggctggagatgtcaatggaggtcggagatggcctaaacttgcctagaaattgccggattttagcccaagagtttgaattagtcatcgaccattcatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

255

Amino Acids

28.7

Weight (kDa)

6.24

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	159
AciI	CCGC	2 cut(s)	157, 303
AclWI	GGATC	5 cut(s)	166, 507, 533, 546, 635
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	6 cut(s)	89, 238, 352, 377, 578, 670
AgsI	TTSAA	3 cut(s)	214, 298, 743
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	511, 530
AluI	AGCT	2 cut(s)	511, 530
AlwI	GGATC	5 cut(s)	166, 507, 533, 546, 635
AoxI	GGCC	5 cut(s)	3, 91, 240, 342, 697
ApeKI	GCWGC	2 cut(s)	109, 455
ApoI	RAATTY	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	115, 343
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	170, 377, 670
AvaII	GGWCC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	538
BanII	GRGCYC	3 cut(s)	78, 139, 147
BbvI	GCAGC	2 cut(s)	96, 442
BccI	CCATC	6 cut(s)	183, 384, 436, 618, 660, 689
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	2 cut(s)	241, 343
BcnI	CCSGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	711
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	2 cut(s)	241, 343
BisI	GCNGC	3 cut(s)	110, 157, 456
BlsI	GCNGC	3 cut(s)	111, 158, 457
Bme1390I	CCNGG	2 cut(s)	32, 347
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 343
BmiI	GGNNCC	3 cut(s)	345, 415, 540
BmrFI	CCNGG	2 cut(s)	32, 347
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	692
Bpu10I	CCTNAGC	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	28, 161
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	88, 243, 345
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 238, 352, 377, 578, 670
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	88, 243, 345
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	6 cut(s)	89, 238, 352, 377, 578, 670
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	3 cut(s)	72, 250, 375
BseXI	GCAGC	2 cut(s)	96, 442
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	5 cut(s)	5, 93, 242, 344, 699
BsiSI	CCGG	4 cut(s)	113, 252, 347, 721
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	6 cut(s)	89, 238, 352, 377, 578, 670
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	5 cut(s)	5, 93, 242, 344, 699
Bsp1286I	GDGCHC	3 cut(s)	78, 139, 147
Bsp143I	GATC	5 cut(s)	162, 171, 499, 538, 627
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	2 cut(s)	157, 303
BspANI	GGCC	5 cut(s)	5, 93, 242, 344, 699
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	345, 415, 540
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	5 cut(s)	166, 507, 533, 546, 635
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	88, 243, 345
BssMI	GATC	5 cut(s)	162, 171, 499, 538, 627
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	486, 600
BstDEI	CTNAG	2 cut(s)	17, 64
BstDSI	CCRYGG	2 cut(s)	88, 243
BstEII	GGTNACC	1 cut(s)	658
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	5 cut(s)	165, 174, 502, 541, 630
BstMBI	GATC	5 cut(s)	162, 171, 499, 538, 627
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 60, 118
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	602
BstPI	GGTNACC	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	30, 345
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	96, 442
BstX2I	RGATCY	3 cut(s)	171, 538, 627
BstYI	RGATCY	3 cut(s)	171, 538, 627
BsuI	GTATCC	2 cut(s)	241, 343
BsuRI	GGCC	5 cut(s)	5, 93, 242, 344, 699
BtgI	CCRYGG	2 cut(s)	88, 243
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	542
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	486, 600
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	115, 343
CviAII	CATG	4 cut(s)	166, 244, 599, 762
DdeI	CTNAG	2 cut(s)	17, 64
DpnI	GATC	5 cut(s)	164, 173, 501, 540, 629
DpnII	GATC	5 cut(s)	162, 171, 499, 538, 627
DraI	TTTAAA	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	3 cut(s)	78, 139, 147
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	658
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	3 cut(s)	78, 139, 147
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	169, 247, 602, 765
FaiI	YATR	8 cut(s)	132, 167, 245, 312, 314, 567, 600, 763
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	165, 243, 598, 761
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	110, 157, 456
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	3 cut(s)	78, 139, 147
Fsp4HI	GCNGC	3 cut(s)	110, 157, 456
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	3 cut(s)	110, 157, 456
GsuI	CTGGAG	1 cut(s)	692
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	5, 93, 242, 344, 699
HapII	CCGG	4 cut(s)	113, 252, 347, 721
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	169, 247, 602, 765
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	4 cut(s)	113, 252, 347, 721
HphI	GGTGA	3 cut(s)	170, 377, 670
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	18, 429, 504, 692
Hpy188III	TCNNGA	5 cut(s)	140, 224, 331, 491, 536
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	206, 272
HpyAV	CCTTC	3 cut(s)	112, 350, 443
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	280, 463, 525, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 60, 118
HpyF3I	CTNAG	2 cut(s)	17, 64
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	169, 247, 602, 765
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	5 cut(s)	162, 171, 499, 538, 627
LmnI	GCTCC	2 cut(s)	557, 595
Lsp1109I	GCAGC	2 cut(s)	96, 442
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	5 cut(s)	164, 173, 501, 540, 629
MboI	GATC	5 cut(s)	162, 171, 499, 538, 627
MboII	GAAGA	1 cut(s)	517
MflI	RGATCY	3 cut(s)	171, 538, 627
MhlI	GDGCHC	3 cut(s)	78, 139, 147
MluCI	AATT	6 cut(s)	293, 396, 549, 562, 715, 743
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	670
MseI	TTAA	4 cut(s)	41, 291, 519, 552
MslI	CAYNNNNRTG	1 cut(s)	388
MspI	CCGG	4 cut(s)	113, 252, 347, 721
MspR9I	CCNGG	2 cut(s)	32, 347
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	27, 60, 118
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	5 cut(s)	162, 171, 499, 538, 627
NlaIII	CATG	4 cut(s)	169, 247, 602, 765
NlaIV	GGNNCC	3 cut(s)	345, 415, 540
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	111, 158, 457
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	345, 415, 540
PspPI	GGNCC	2 cut(s)	115, 343
PsuI	RGATCY	3 cut(s)	171, 538, 627
RseI	CAYNNNNRTG	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	41, 291, 519, 552
SatI	GCNGC	3 cut(s)	110, 157, 456
Sau3AI	GATC	5 cut(s)	162, 171, 499, 538, 627
Sau96I	GGNCC	2 cut(s)	115, 343
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	32, 347
SduI	GDGCHC	3 cut(s)	78, 139, 147
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	2 cut(s)	7, 140
SmoI	CTYRAG	2 cut(s)	7, 140
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	6 cut(s)	293, 396, 549, 562, 715, 743
SsiI	CCGC	2 cut(s)	157, 303
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	2 cut(s)	30, 345
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	204, 225, 234, 753
TasI	AATT	6 cut(s)	293, 396, 549, 562, 715, 743
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	4 cut(s)	41, 291, 519, 552
Tru9I	TTAA	4 cut(s)	41, 291, 519, 552
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	109, 455
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	372, 750
TspGWI	ACGGA	2 cut(s)	77, 368
TspRI	CASTG	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.