Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

26912106 .. 26914788

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1164700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCTCCGAGCTCTCGTGGCCAGTAAAGCGCTCCGATTAGGTCTTCAGAGCGAGCCCAGAATCCTTGCTCATTCTCGCGGCCTGCAGACCTTCTCGCTCCCCGACCTTCCCTACGATTATGGCGCCCTGGAGCCTGCAATCAGCGGCGAGATCATGCAGATCCACCACCAGAAGCACCACCAGGCTTACGTCACCAACTACAACAATGCTCTCGAGCAGCTCCACGACGCCATCGGCAAGGGCGACGCTGCTGCCGCTGTTAAGTTGCAGAGCGCCATCAAGTTCAATGGCGGAGGTCATGTAAACCACTCGATTTTCTGGAAGAATCTGACTCCTGTTAGTCAAGGTGGCGGCGAGCACCCTCATGGTAAGCTGGGCTGGGCTATTGACACAAATTTTGGAACTTTTGAAGCATTGGTGCAAAAGATCAGTGCAGAAGGCGCTGCTTTGCAGGGTTCTGGATGGGTGTGGCTTGCTCTAGACAAAGAGTTCAACAAACTTGTGGTTGAAACCACTGCAAATCAGGATCCATTGGTTACTAAGGGAGCATCTTTGGTTCCATTACTTGGTATTGACGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTGAGACCAGATTATCTGAAGAACATATGGAAAGTCATCAATTGGAAGTATGCCAGCGAAGTGTACGAGAAAGAAAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

233

Amino Acids

25.68

Weight (kDa)

6.83

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	31 - 111	7.5e-34	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	122 - 225	1.4e-36	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccII	CGCG	1 cut(s)	81
AciI	CCGC	5 cut(s)	81, 147, 258, 294, 354
AclWI	GGATC	3 cut(s)	157, 524, 537
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	2 cut(s)	32, 653
AcyI	GRCGYC	2 cut(s)	126, 231
AfaI	GTAC	3 cut(s)	596, 608, 680
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	289, 413, 496, 512
AjnI	CCWGG	2 cut(s)	129, 183
AluBI	AGCT	3 cut(s)	14, 223, 376
AluI	AGCT	3 cut(s)	14, 223, 376
Alw21I	GWGCWC	2 cut(s)	16, 363
Alw26I	GTCTC	1 cut(s)	613
AlwI	GGATC	3 cut(s)	157, 524, 537
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	2 cut(s)	21, 82
ApeKI	GCWGC	4 cut(s)	220, 251, 254, 446
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspLEI	GCGC	4 cut(s)	34, 128, 278, 446
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	16, 60
BauI	CACGAG	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	16, 363
BbvI	GCAGC	4 cut(s)	232, 238, 241, 433
BccI	CCATC	3 cut(s)	242, 287, 459
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	131, 185
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	4 cut(s)	35, 129, 279, 447
BisI	GCNGC	8 cut(s)	82, 148, 221, 252, 255, 258, 355, 447
BlsI	GCNGC	8 cut(s)	83, 149, 222, 253, 256, 259, 356, 448
Bme1390I	CCNGG	2 cut(s)	131, 185
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	4 cut(s)	127, 135, 531, 561
BmrFI	CCNGG	2 cut(s)	131, 185
BmsI	GCATC	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	152
BsaHI	GRCGYC	2 cut(s)	126, 231
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 578, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	131, 185
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	232, 238, 241, 433
BseYI	CCCAGC	2 cut(s)	376, 381
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	23, 84
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	2 cut(s)	16, 363
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	23, 84
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	16, 60, 363
Bsp143I	GATC	4 cut(s)	153, 162, 429, 529
BspACI	CCGC	5 cut(s)	81, 147, 258, 294, 354
BspANI	GGCC	2 cut(s)	23, 84
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	127, 135, 531, 561
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	3 cut(s)	157, 524, 537
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	153, 162, 429, 529
BssNI	GRCGYC	2 cut(s)	126, 231
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	131, 185
Bst4CI	ACNGT	1 cut(s)	606
BstACI	GRCGYC	2 cut(s)	126, 231
BstC8I	GCNNGC	7 cut(s)	56, 86, 138, 359, 477, 591, 670
BstDEI	CTNAG	1 cut(s)	543
BstF5I	GGATG	1 cut(s)	470
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	4 cut(s)	35, 129, 279, 447
BstHHI	GCGC	4 cut(s)	34, 128, 278, 446
BstKTI	GATC	4 cut(s)	156, 165, 432, 532
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	4 cut(s)	153, 162, 429, 529
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 29, 257, 443
BstNI	CCWGG	2 cut(s)	131, 185
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	129, 183
BstSFI	CTRYAG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	232, 238, 241, 433
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	162, 529
BstYI	RGATCY	2 cut(s)	162, 529
BsuRI	GGCC	2 cut(s)	23, 84
BtsCI	GGATG	1 cut(s)	470
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	439, 516
Cac8I	GCNNGC	7 cut(s)	56, 86, 138, 359, 477, 591, 670
CfoI	GCGC	4 cut(s)	34, 128, 278, 446
CseI	GACGC	2 cut(s)	239, 257
Csp6I	GTAC	3 cut(s)	595, 607, 679
CviAII	CATG	4 cut(s)	157, 302, 368, 590
CviQI	GTAC	3 cut(s)	595, 607, 679
DdeI	CTNAG	1 cut(s)	543
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	4 cut(s)	155, 164, 431, 531
DpnII	GATC	4 cut(s)	153, 162, 429, 529
EaeI	YGGCCR	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	309
Ecl136II	GAGCTC	1 cut(s)	14
Eco24I	GRGCYC	2 cut(s)	16, 60
Eco31I	GGTCTC	1 cut(s)	613
Eco47III	AGCGCT	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	2 cut(s)	32, 653
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	129, 183
EcoT38I	GRGCYC	2 cut(s)	16, 60
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	4 cut(s)	160, 305, 371, 593
FaiI	YATR	8 cut(s)	123, 158, 303, 369, 591, 641, 643, 666
FatI	CATG	4 cut(s)	156, 301, 367, 589
FauNDI	CATATG	1 cut(s)	641
Fnu4HI	GCNGC	8 cut(s)	82, 148, 221, 252, 255, 258, 355, 447
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	2 cut(s)	16, 60
Fsp4HI	GCNGC	8 cut(s)	82, 148, 221, 252, 255, 258, 355, 447
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	4 cut(s)	33, 127, 277, 445
GluI	GCNGC	8 cut(s)	82, 148, 221, 252, 255, 258, 355, 447
GsaI	CCCAGC	2 cut(s)	380, 385
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	4 cut(s)	35, 129, 279, 447
HaeIII	GGCC	2 cut(s)	23, 84
HgaI	GACGC	2 cut(s)	239, 257
HhaI	GCGC	4 cut(s)	34, 128, 278, 446
Hin1I	GRCGYC	2 cut(s)	126, 231
Hin1II	CATG	4 cut(s)	160, 305, 371, 593
Hin6I	GCGC	4 cut(s)	32, 126, 276, 444
HinP1I	GCGC	4 cut(s)	32, 126, 276, 444
HinfI	GANTC	3 cut(s)	63, 328, 334
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	2 cut(s)	307, 679
Hpy188I	TCNGA	5 cut(s)	11, 38, 51, 333, 633
Hpy188III	TCNNGA	5 cut(s)	215, 322, 462, 482, 527
Hpy8I	GTNNAC	2 cut(s)	307, 679
Hpy99I	CGWCG	2 cut(s)	233, 251
HpyAV	CCTTC	3 cut(s)	103, 119, 434
HpyCH4III	ACNGT	1 cut(s)	606
HpyCH4IV	ACGT	2 cut(s)	192, 579
HpyCH4V	TGCA	8 cut(s)	88, 140, 160, 271, 424, 437, 454, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 29, 257, 443
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	2 cut(s)	192, 579
Hsp92I	GRCGYC	2 cut(s)	126, 231
Hsp92II	CATG	4 cut(s)	160, 305, 371, 593
HspAI	GCGC	4 cut(s)	32, 126, 276, 444
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	4 cut(s)	153, 162, 429, 529
LmnI	GCTCC	6 cut(s)	39, 105, 133, 228, 548, 586
Lsp1109I	GCAGC	4 cut(s)	232, 238, 241, 433
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	192, 579
MaeIII	GTNAC	2 cut(s)	193, 538
MalI	GATC	4 cut(s)	155, 164, 431, 531
MboI	GATC	4 cut(s)	153, 162, 429, 529
MboII	GAAGA	3 cut(s)	38, 337, 646
MfeI	CAATTG	1 cut(s)	655
MflI	RGATCY	2 cut(s)	162, 529
MhlI	GDGCHC	3 cut(s)	16, 60, 363
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	2 cut(s)	397, 655
MluNI	TGGCCA	1 cut(s)	23
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	290, 375
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	147, 260
MspR9I	CCNGG	2 cut(s)	131, 185
MunI	CAATTG	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	131, 185
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 29, 257, 443
NarI	GGCGCC	1 cut(s)	126
NdeI	CATATG	1 cut(s)	641
NdeII	GATC	4 cut(s)	153, 162, 429, 529
NlaIII	CATG	4 cut(s)	160, 305, 371, 593
NlaIV	GGNNCC	4 cut(s)	127, 135, 531, 561
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	63, 328
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	8 cut(s)	83, 149, 222, 253, 256, 259, 356, 448
PleI	GAGTC	1 cut(s)	328
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	129, 183
PspFI	CCCAGC	2 cut(s)	376, 381
PspGI	CCWGG	2 cut(s)	129, 183
PspN4I	GGNNCC	4 cut(s)	127, 135, 531, 561
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	2 cut(s)	162, 529
RsaI	GTAC	3 cut(s)	596, 608, 680
RsaNI	GTAC	3 cut(s)	595, 607, 679
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	8 cut(s)	82, 148, 221, 252, 255, 258, 355, 447
Sau3AI	GATC	4 cut(s)	153, 162, 429, 529
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	131, 185
SduI	GDGCHC	3 cut(s)	16, 60, 363
SfaNI	GCATC	1 cut(s)	560
SfcI	CTRYAG	1 cut(s)	86
SfoI	GGCGCC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	2 cut(s)	397, 655
SsiI	CCGC	5 cut(s)	81, 147, 258, 294, 354
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	129, 183
TaaI	ACNGT	1 cut(s)	606
TaiI	ACGT	2 cut(s)	195, 582
TaqI	TCGA	2 cut(s)	216, 314
TasI	AATT	2 cut(s)	397, 655
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	4 cut(s)	84, 150, 260, 357
TfiI	GAWTC	2 cut(s)	63, 328
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	439, 523
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	220, 251, 254, 446
Tsp45I	GTSAC	1 cut(s)	193
TspRI	CASTG	2 cut(s)	439, 523
Van91I	CCANNNNNTGG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	397
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.