Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

30625745 .. 30628924

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1232200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCTCCGAGCTCTCGTGACCAGGAAAGCCCTCCGATCAGGGTTCCAGAGCGAGCCCAGAATCCTTGCCCATTCTCGCGGCCTGCAGACCTTCTCGCTGCCCGACCTTCCCTACGACTATGGCGCTCTGGAGCCTGCAATCAGCGGCGAGATCATGGAGCTCCACCACAAAAAGCACCACCAGGCTTACATCACCAACTACAACAAAGCTCTCGAGCAGCTCCACGACGCCATCGGCAAGGGCGACGCTGCTGCCGTTGTTAAGTTGCAGAGCGCCATCAAGTTCAATGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAAGAATCTGACTCCTATTAGTCAAGGTGGAGGTGAGTCCCCTCATAGTAACCTGGGCTGGGCCATTGACATGAGTTTTGGTTCTTTTGATGCATTGGTGCAAAAGATCAACACAGAAGGCGCTGCTTTGCAGGGTTCTGGATGGGTGTGGCTTGCTCTAGACAAAGAGTTGAAGAAACTTGTGGTTGAAACCACTGCAAATCAGGACCCATTGGTTACTAAAGGAGCATCTTTGGTTCCATTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTTCAGTACAAGAATGTGAGACCAGATTATCTGAAGAACATATGGAAAGTCATCAACTGGAAGTATGCCAGTGAAGTGTACGAGAAAGAAAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

233

Amino Acids

25.87

Weight (kDa)

7.92

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	31 - 111	2.8e-33	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	123 - 225	2.5e-36	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccII	CGCG	1 cut(s)	81
AciI	CCGC	3 cut(s)	81, 147, 294
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	596, 608, 680
AfiI	CCNNNNNNNGG	2 cut(s)	382, 569
AgsI	TTSAA	3 cut(s)	289, 496, 512
AjnI	CCWGG	3 cut(s)	23, 183, 375
AluBI	AGCT	4 cut(s)	14, 163, 212, 223
AluI	AGCT	4 cut(s)	14, 163, 212, 223
Alw21I	GWGCWC	2 cut(s)	16, 165
Alw26I	GTCTC	1 cut(s)	613
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	2 cut(s)	82, 384
ApeKI	GCWGC	5 cut(s)	100, 220, 251, 254, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspLEI	GCGC	3 cut(s)	128, 278, 446
AspS9I	GGNCC	2 cut(s)	384, 529
AsuHPI	GGTGA	2 cut(s)	187, 368
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	529
BanII	GRGCYC	3 cut(s)	16, 60, 165
BauI	CACGAG	1 cut(s)	17
Bbv12I	GWGCWC	2 cut(s)	16, 165
BbvI	GCAGC	5 cut(s)	87, 232, 238, 241, 433
BccI	CCATC	3 cut(s)	242, 287, 459
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	3 cut(s)	25, 185, 377
BcoDI	GTCTC	1 cut(s)	613
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	3 cut(s)	129, 279, 447
BisI	GCNGC	7 cut(s)	82, 101, 148, 221, 252, 255, 447
BlsI	GCNGC	7 cut(s)	83, 102, 149, 222, 253, 256, 448
Bme1390I	CCNGG	3 cut(s)	25, 185, 377
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	384, 529
BmiI	GGNNCC	4 cut(s)	47, 135, 531, 561
BmrFI	CCNGG	3 cut(s)	25, 185, 377
BmsI	GCATC	2 cut(s)	403, 560
BpmI	CTGGAG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 569
Bse1I	ACTGG	2 cut(s)	662, 669
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	3 cut(s)	25, 185, 377
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	2 cut(s)	382, 569
BseMI	GCAATG	1 cut(s)	563
BseNI	ACTGG	2 cut(s)	662, 669
BseXI	GCAGC	5 cut(s)	87, 232, 238, 241, 433
BseYI	CCCAGC	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	84, 386
BsiHKAI	GWGCWC	2 cut(s)	16, 165
BsiHKCI	CYCGRG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	2 cut(s)	382, 569
BsmAI	GTCTC	1 cut(s)	613
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	84, 386
Bso31I	GGTCTC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	3 cut(s)	16, 60, 165
Bsp143I	GATC	3 cut(s)	38, 153, 429
BspACI	CCGC	3 cut(s)	81, 147, 294
BspANI	GGCC	2 cut(s)	84, 386
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	47, 135, 531, 561
BspMAI	CTGCAG	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	662, 669
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	3 cut(s)	38, 153, 429
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	3 cut(s)	25, 185, 377
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	56, 86, 138, 477, 591
BstF5I	GGATG	1 cut(s)	470
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	3 cut(s)	129, 279, 447
BstHHI	GCGC	3 cut(s)	128, 278, 446
BstKTI	GATC	3 cut(s)	41, 156, 432
BstMAI	GTCTC	1 cut(s)	613
BstMBI	GATC	3 cut(s)	38, 153, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	3 cut(s)	25, 185, 377
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	3 cut(s)	23, 183, 375
BstSFI	CTRYAG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	5 cut(s)	87, 232, 238, 241, 433
BsuRI	GGCC	2 cut(s)	84, 386
BtsCI	GGATG	1 cut(s)	470
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	516, 676
Cac8I	GCNNGC	5 cut(s)	56, 86, 138, 477, 591
CfoI	GCGC	3 cut(s)	128, 278, 446
Cfr13I	GGNCC	2 cut(s)	384, 529
CseI	GACGC	2 cut(s)	239, 257
Csp6I	GTAC	3 cut(s)	595, 607, 679
CviAII	CATG	4 cut(s)	157, 302, 394, 590
CviQI	GTAC	3 cut(s)	595, 607, 679
DpnI	GATC	3 cut(s)	40, 155, 431
DpnII	GATC	3 cut(s)	38, 153, 429
EciI	GGCGGA	1 cut(s)	309
Ecl136II	GAGCTC	2 cut(s)	14, 163
Eco24I	GRGCYC	3 cut(s)	16, 60, 165
Eco31I	GGTCTC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	529
Eco53kI	GAGCTC	2 cut(s)	14, 163
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	2 cut(s)	14, 163
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRII	CCWGG	3 cut(s)	23, 183, 375
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	3 cut(s)	16, 60, 165
FaeI	CATG	4 cut(s)	160, 305, 397, 593
FaiI	YATR	9 cut(s)	123, 158, 303, 369, 395, 591, 641, 643, 666
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	4 cut(s)	156, 301, 393, 589
FauNDI	CATATG	1 cut(s)	641
Fnu4HI	GCNGC	7 cut(s)	82, 101, 148, 221, 252, 255, 447
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	3 cut(s)	16, 60, 165
Fsp4HI	GCNGC	7 cut(s)	82, 101, 148, 221, 252, 255, 447
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	3 cut(s)	127, 277, 445
GluI	GCNGC	7 cut(s)	82, 101, 148, 221, 252, 255, 447
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	152
HaeII	RGCGCY	3 cut(s)	129, 279, 447
HaeIII	GGCC	2 cut(s)	84, 386
HgaI	GACGC	2 cut(s)	239, 257
HhaI	GCGC	3 cut(s)	128, 278, 446
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	160, 305, 397, 593
Hin6I	GCGC	3 cut(s)	126, 276, 444
HinP1I	GCGC	3 cut(s)	126, 276, 444
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	4 cut(s)	63, 328, 334, 359
HphI	GGTGA	2 cut(s)	187, 368
Hpy166II	GTNNAC	2 cut(s)	307, 679
Hpy188I	TCNGA	4 cut(s)	11, 38, 333, 633
Hpy188III	TCNNGA	8 cut(s)	19, 49, 131, 215, 322, 462, 482, 527
Hpy8I	GTNNAC	2 cut(s)	307, 679
Hpy99I	CGWCG	2 cut(s)	233, 251
HpyAV	CCTTC	3 cut(s)	103, 119, 434
HpyCH4V	TGCA	7 cut(s)	88, 140, 271, 416, 424, 454, 521
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	160, 305, 397, 593
HspAI	GCGC	3 cut(s)	126, 276, 444
Kzo9I	GATC	3 cut(s)	38, 153, 429
LmnI	GCTCC	6 cut(s)	133, 160, 168, 228, 548, 586
Lsp1109I	GCAGC	5 cut(s)	87, 232, 238, 241, 433
LweI	GCATC	2 cut(s)	403, 560
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	19, 371, 538
MalI	GATC	3 cut(s)	40, 155, 431
MboI	GATC	3 cut(s)	38, 153, 429
MboII	GAAGA	3 cut(s)	337, 508, 646
MhlI	GDGCHC	3 cut(s)	16, 60, 165
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	2 cut(s)	328, 368
MnlI	CCTC	4 cut(s)	44, 290, 347, 375
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	3 cut(s)	25, 185, 377
MvaI	CCWGG	3 cut(s)	25, 185, 377
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	641
NdeII	GATC	3 cut(s)	38, 153, 429
NlaIII	CATG	4 cut(s)	160, 305, 397, 593
NlaIV	GGNNCC	4 cut(s)	47, 135, 531, 561
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 255
PfeI	GAWTC	2 cut(s)	63, 328
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	7 cut(s)	83, 102, 149, 222, 253, 256, 448
PleI	GAGTC	2 cut(s)	328, 367
PpsI	GAGTC	2 cut(s)	328, 367
PpuMI	RGGWCCY	1 cut(s)	529
Psp124BI	GAGCTC	2 cut(s)	16, 165
Psp5II	RGGWCCY	1 cut(s)	529
Psp6I	CCWGG	3 cut(s)	23, 183, 375
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	3 cut(s)	23, 183, 375
PspN4I	GGNNCC	4 cut(s)	47, 135, 531, 561
PspPI	GGNCC	2 cut(s)	384, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	90
RsaI	GTAC	3 cut(s)	596, 608, 680
RsaNI	GTAC	3 cut(s)	595, 607, 679
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	2 cut(s)	16, 165
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	7 cut(s)	82, 101, 148, 221, 252, 255, 447
Sau3AI	GATC	3 cut(s)	38, 153, 429
Sau96I	GGNCC	2 cut(s)	384, 529
SchI	GAGTC	2 cut(s)	328, 368
ScrFI	CCNGG	3 cut(s)	25, 185, 377
SduI	GDGCHC	3 cut(s)	16, 60, 165
SfaNI	GCATC	2 cut(s)	403, 560
SfcI	CTRYAG	1 cut(s)	86
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	529
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	3 cut(s)	81, 147, 294
SspMI	CTAG	1 cut(s)	482
SstI	GAGCTC	2 cut(s)	16, 165
StyD4I	CCNGG	3 cut(s)	23, 183, 375
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	315
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	2 cut(s)	84, 150
TfiI	GAWTC	2 cut(s)	63, 328
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	523, 676
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	5 cut(s)	100, 220, 251, 254, 446
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	2 cut(s)	523, 676
Van91I	CCANNNNNTGG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	529
XbaI	TCTAGA	1 cut(s)	481
XceI	RCATGY	1 cut(s)	593
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.