Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Reverse (-)

78784862 .. 78786577

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCCTTGAGAACTCTGAGCAGGAAAAGCCTGGCTGGTTTAACCAGAAATGGCAGAGGAGGCTTAGGCTTCGGGCTCGTCCCAGTCCGTGGCCTAAAGACCTTCACGCTGCCGGACCTGCCCTACGACTATGGGGCACTTGAGCCCTCCATTAGCCGCGAGATCATGGAGATCCATCACCTGAAGCACCACAACACCTACGTCGACAACTTCAACAAGGCTCTCGACAACCTCGAACAGGCAATGGATACCGGCGACTCCTCCACCGTCGTCAAGTTGCAGAGCGCCCTTAAATTCAACGGCGGAGGTTTAGAAGGAGGAGGTGAGCCTCCAAAGGGTTCATTGGGATGGGAAGTTGACAATCAGTTTGGTTCGTTACAAAGTCTGAAACAGAAAATGATGGTAGAAGGTTCTGCTTTGCAAGGTTCTGGTTGGGTGTGGCTTGCTCTTGACAAAGATCAGAAGAAGCTTTCCGTTGAATGCACAGCTAATCAGGATCCACTGATAGTTAAAGGAGCAAATTATGTTCCTCTGCTTGGGATAGATGTGTGGGAGCATGCTTACTACTTGCAGTACAAAAACGTAAGGCCAGACTATCTGAAGTACATATGGGAGGTTGTTAACTGGAAATATGCAAGTGAAGTGTACGAGAAAGAGTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

221

Amino Acids

24.74

Weight (kDa)

6.22

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	34 - 103	1.5e-25	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	111 - 214	7e-35	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	159
AciI	CCGC	2 cut(s)	157, 303
AclWI	GGATC	3 cut(s)	166, 491, 504
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	2 cut(s)	203, 620
AfaI	GTAC	3 cut(s)	575, 605, 647
AfiI	CCNNNNNNNGG	4 cut(s)	89, 238, 335, 536
AgsI	TTSAA	3 cut(s)	214, 298, 479
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	469, 488
AluI	AGCT	2 cut(s)	469, 488
AlwI	GGATC	3 cut(s)	166, 491, 504
AoxI	GGCC	3 cut(s)	3, 91, 587
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	170, 335
AvaII	GGWCC	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	496
BanII	GRGCYC	2 cut(s)	78, 147
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	3 cut(s)	183, 342, 394
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	241
BisI	GCNGC	2 cut(s)	110, 157
BlsI	GCNGC	2 cut(s)	111, 158
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	28, 161
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 238, 335, 536
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	83, 629
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	4 cut(s)	89, 238, 335, 536
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	2 cut(s)	83, 629
BseRI	GAGGAG	3 cut(s)	72, 250, 333
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	3 cut(s)	5, 93, 589
BsiSI	CCGG	2 cut(s)	113, 252
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	89, 238, 335, 536
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	5, 93, 589
Bsp1286I	GDGCHC	3 cut(s)	78, 139, 147
Bsp143I	GATC	4 cut(s)	162, 171, 457, 496
BspACI	CCGC	2 cut(s)	157, 303
BspANI	GGCC	3 cut(s)	5, 93, 589
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	3 cut(s)	166, 491, 504
BsrDI	GCAATG	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	83, 629
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	4 cut(s)	162, 171, 457, 496
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	444, 558
BstDEI	CTNAG	2 cut(s)	17, 64
BstDSI	CCRYGG	1 cut(s)	88
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	4 cut(s)	165, 174, 460, 499
BstMBI	GATC	4 cut(s)	162, 171, 457, 496
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 60, 118
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	139
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	2 cut(s)	171, 496
BstYI	RGATCY	2 cut(s)	171, 496
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	5, 93, 589
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	500
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	444, 558
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	574, 604, 646
CviAII	CATG	2 cut(s)	166, 557
CviQI	GTAC	3 cut(s)	574, 604, 646
DdeI	CTNAG	2 cut(s)	17, 64
DpnI	GATC	4 cut(s)	164, 173, 459, 498
DpnII	GATC	4 cut(s)	162, 171, 457, 496
EciI	GGCGGA	1 cut(s)	318
Eco24I	GRGCYC	2 cut(s)	78, 147
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	2 cut(s)	203, 620
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	78, 147
FaeI	CATG	2 cut(s)	169, 560
FaiI	YATR	7 cut(s)	132, 167, 525, 558, 608, 610, 633
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	165, 556
FauNDI	CATATG	1 cut(s)	608
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	110, 157
FokI	GGATG	1 cut(s)	360
FriOI	GRGCYC	2 cut(s)	78, 147
Fsp4HI	GCNGC	2 cut(s)	110, 157
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	110, 157
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	5, 93, 589
HapII	CCGG	2 cut(s)	113, 252
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	169, 560
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	3 cut(s)	205, 358, 622
HindII	GTYRAC	3 cut(s)	205, 358, 622
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	1 cut(s)	257
HpaI	GTTAAC	1 cut(s)	622
HpaII	CCGG	2 cut(s)	113, 252
HphI	GGTGA	2 cut(s)	170, 335
Hpy166II	GTNNAC	4 cut(s)	205, 358, 622, 646
Hpy188I	TCNGA	4 cut(s)	18, 387, 462, 600
Hpy188III	TCNNGA	3 cut(s)	224, 449, 494
Hpy8I	GTNNAC	4 cut(s)	205, 358, 622, 646
Hpy99I	CGWCG	2 cut(s)	206, 272
HpyAV	CCTTC	3 cut(s)	112, 308, 401
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	201, 582
HpyCH4V	TGCA	5 cut(s)	280, 421, 483, 571, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 60, 118
HpyF3I	CTNAG	2 cut(s)	17, 64
HpySE526I	ACGT	2 cut(s)	201, 582
Hsp92II	CATG	2 cut(s)	169, 560
HspAI	GCGC	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	162, 171, 457, 496
LmnI	GCTCC	2 cut(s)	515, 553
Lsp1109I	GCAGC	1 cut(s)	96
MaeII	ACGT	2 cut(s)	201, 582
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	4 cut(s)	164, 173, 459, 498
MboI	GATC	4 cut(s)	162, 171, 457, 496
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	2 cut(s)	171, 496
MhlI	GDGCHC	3 cut(s)	78, 139, 147
MluCI	AATT	2 cut(s)	293, 520
MlyI	GAGTC	1 cut(s)	251
MseI	TTAA	4 cut(s)	41, 291, 510, 621
MslI	CAYNNNNRTG	1 cut(s)	346
MspI	CCGG	2 cut(s)	113, 252
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	27, 60, 118
NdeI	CATATG	1 cut(s)	608
NdeII	GATC	4 cut(s)	162, 171, 457, 496
NlaIII	CATG	2 cut(s)	169, 560
NlaIV	GGNNCC	1 cut(s)	498
NspI	RCATGY	1 cut(s)	560
PaeI	GCATGC	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	111, 158
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	171, 496
RsaI	GTAC	3 cut(s)	575, 605, 647
RsaNI	GTAC	3 cut(s)	574, 604, 646
RseI	CAYNNNNRTG	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	41, 291, 510, 621
SatI	GCNGC	2 cut(s)	110, 157
Sau3AI	GATC	4 cut(s)	162, 171, 457, 496
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	3 cut(s)	78, 139, 147
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	7, 140
SmoI	CTYRAG	2 cut(s)	7, 140
SphI	GCATGC	1 cut(s)	560
Sse9I	AATT	2 cut(s)	293, 520
SsiI	CCGC	2 cut(s)	157, 303
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	204, 585
TaqI	TCGA	3 cut(s)	204, 225, 234
TasI	AATT	2 cut(s)	293, 520
TatI	WGTACW	2 cut(s)	573, 603
TauI	GCSGC	1 cut(s)	159
Tru1I	TTAA	4 cut(s)	41, 291, 510, 621
Tru9I	TTAA	4 cut(s)	41, 291, 510, 621
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	2 cut(s)	77, 463
TspRI	CASTG	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.