Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Reverse (-)

79223011 .. 79224568

Gene Structure 1558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTTGGGAACTCTCAACAGGAAAACCCTAGCAGGTCTAACCAGAAATGGCAATGGAGGCTTTGGCTTCGGGCTCGTTCCAATCTGTGGCCTAAAGACCTTCGCGCTGCCGGACCTGCCATACGACTATGCCGCACTTGAGCCCTACATTAGTGGCGAGATCATGGACGTCCGTCACCTGAAGCACTACAAGACCTACGTCGACAACTTCAACAAGGCCCTCGACAACCTTGAACAGGCCATGGCTACCGGCGACTCCTCCACCGTTGTCAAGTTGCAGAGCGCCCTCAAGTTCAACGGCGGAGGTCATATAAACCACTCCATTTTCTGGAAATGTCTGGCCCCGGATACAGAAGGAGGCGGTGAGCCTCCAAAGGGTTCATTGGGATGGGAAATTGACAATCAGTTTGGTTCCTTACAAAGTCTGAAACAGAAAATGATGGTAGAAGGTGCTGCTTTGCAAGGTTCTGGTTGGTGGCTTGCTCTAGACAAAGATCAGAAGAAGCTTTCCATTGAATGTACAGCTAATCAGGATCCACTGACAATTAGAGTAGCGAATTATGTTCCTCTGCTCGAGATAGATGTGTGGGAGCATGCTTACTACTTGCAGGTTTGGATTTGGACAATGAACAAGTTCTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

216

Amino Acids

23.87

Weight (kDa)

5.94

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	34 - 115	9.6e-31	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	125 - 204	7.1e-20	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
Acc36I	ACCTGC	3 cut(s)	26, 126, 601
AccB7I	CCANNNNNTGG	2 cut(s)	89, 330
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	107
AciI	CCGC	3 cut(s)	135, 303, 363
AclWI	GGATC	2 cut(s)	530, 543
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	523
AfiI	CCNNNNNNNGG	4 cut(s)	89, 238, 330, 377
AgsI	TTSAA	4 cut(s)	214, 236, 298, 518
AluBI	AGCT	2 cut(s)	508, 527
AluI	AGCT	2 cut(s)	508, 527
AlwI	GGATC	2 cut(s)	530, 543
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	5 cut(s)	3, 91, 219, 240, 342
ApeKI	GCWGC	2 cut(s)	109, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	109, 287
AspS9I	GGNCC	3 cut(s)	115, 220, 343
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	170, 377
AvaI	CYCGRG	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	78, 147
BbvI	GCAGC	2 cut(s)	96, 442
BccI	CCATC	2 cut(s)	384, 436
BceAI	ACGGC	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	347
BfaI	CTAG	2 cut(s)	32, 488
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	3 cut(s)	26, 126, 601
BfuI	GTATCC	1 cut(s)	343
BisI	GCNGC	3 cut(s)	110, 135, 456
BlsI	GCNGC	3 cut(s)	111, 136, 457
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	115, 220, 343
BmiI	GGNNCC	3 cut(s)	345, 415, 537
BmrFI	CCNGG	1 cut(s)	347
BoxI	GACNNNNGTC	2 cut(s)	174, 200
BpuEI	CTTGAG	2 cut(s)	161, 275
BpuMI	CCSGG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	6, 243, 345
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 238, 330, 377
Bse118I	RCCGGY	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	6, 243, 345
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	4 cut(s)	89, 238, 330, 377
BseMI	GCAATG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	96, 442
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	5 cut(s)	5, 93, 221, 242, 344
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	3 cut(s)	113, 252, 347
BslI	CCNNNNNNNGG	4 cut(s)	89, 238, 330, 377
BsnI	GGCC	5 cut(s)	5, 93, 221, 242, 344
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	78, 147
Bsp1407I	TGTACA	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	162, 496, 535
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	3 cut(s)	135, 303, 363
BspANI	GGCC	5 cut(s)	5, 93, 221, 242, 344
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	3 cut(s)	345, 415, 537
BspMI	ACCTGC	3 cut(s)	26, 126, 601
BspPI	GGATC	2 cut(s)	530, 543
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	6, 243, 345
BssMI	GATC	3 cut(s)	162, 496, 535
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	6, 243
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	483, 597
BstDSI	CCRYGG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	109, 287
BstKTI	GATC	3 cut(s)	165, 499, 538
BstMBI	GATC	3 cut(s)	162, 496, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 118
BstNSI	RCATGY	1 cut(s)	599
BstPAI	GACNNNNGTC	2 cut(s)	174, 200
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	96, 442
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	5 cut(s)	5, 93, 221, 242, 344
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	539
BveI	ACCTGC	3 cut(s)	26, 126, 601
Cac8I	GCNNGC	2 cut(s)	483, 597
CfoI	GCGC	2 cut(s)	109, 287
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	3 cut(s)	115, 220, 343
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	3 cut(s)	166, 244, 596
CviQI	GTAC	1 cut(s)	522
DpnI	GATC	3 cut(s)	164, 498, 537
DpnII	GATC	3 cut(s)	162, 496, 535
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	6, 243
Eco24I	GRGCYC	2 cut(s)	78, 147
Eco47I	GGWCC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	575
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	6, 243
EcoT38I	GRGCYC	2 cut(s)	78, 147
ErhI	CCWWGG	2 cut(s)	6, 243
FaeI	CATG	3 cut(s)	169, 247, 599
FaiI	YATR	8 cut(s)	124, 132, 167, 245, 312, 314, 564, 597
FatI	CATG	3 cut(s)	165, 243, 595
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	110, 135, 456
FokI	GGATG	1 cut(s)	402
FriOI	GRGCYC	2 cut(s)	78, 147
Fsp4HI	GCNGC	3 cut(s)	110, 135, 456
FspBI	CTAG	2 cut(s)	32, 488
GlaI	GCGC	2 cut(s)	108, 286
GluI	GCNGC	3 cut(s)	110, 135, 456
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	5, 93, 221, 242, 344
HapII	CCGG	3 cut(s)	113, 252, 347
HhaI	GCGC	2 cut(s)	109, 287
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	169, 247, 599
Hin6I	GCGC	2 cut(s)	107, 285
HinP1I	GCGC	2 cut(s)	107, 285
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	3 cut(s)	113, 252, 347
HphI	GGTGA	2 cut(s)	170, 377
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	429, 501
Hpy188III	TCNNGA	5 cut(s)	331, 488, 533, 577, 640
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	112, 350, 443
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	171, 201
HpyCH4V	TGCA	3 cut(s)	280, 463, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 118
HpySE526I	ACGT	2 cut(s)	171, 201
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	169, 247, 599
HspAI	GCGC	2 cut(s)	107, 285
Kzo9I	GATC	3 cut(s)	162, 496, 535
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	2 cut(s)	96, 442
MaeI	CTAG	2 cut(s)	32, 488
MaeII	ACGT	2 cut(s)	171, 201
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	3 cut(s)	164, 498, 537
MboI	GATC	3 cut(s)	162, 496, 535
MboII	GAAGA	1 cut(s)	514
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	78, 147
MluCI	AATT	3 cut(s)	396, 546, 559
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	53, 233, 271, 299, 299, 353, 381, 579
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	1 cut(s)	646
MslI	CAYNNNNRTG	1 cut(s)	388
MspI	CCGG	3 cut(s)	113, 252, 347
MspR9I	CCNGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	60, 118
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	3 cut(s)	162, 496, 535
NlaIII	CATG	3 cut(s)	169, 247, 599
NlaIV	GGNNCC	3 cut(s)	345, 415, 537
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	599
PaeI	GCATGC	1 cut(s)	599
PaeR7I	CTCGAG	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	635
PflMI	CCANNNNNTGG	2 cut(s)	89, 330
PkrI	GCNGC	3 cut(s)	111, 136, 457
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PshAI	GACNNNNGTC	2 cut(s)	174, 200
PspN4I	GGNNCC	3 cut(s)	345, 415, 537
PspPI	GGNCC	3 cut(s)	115, 220, 343
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	3 cut(s)	110, 135, 456
Sau3AI	GATC	3 cut(s)	162, 496, 535
Sau96I	GGNCC	3 cut(s)	115, 220, 343
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	78, 147
Sfr274I	CTCGAG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	3 cut(s)	140, 290, 575
SmoI	CTYRAG	3 cut(s)	140, 290, 575
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	3 cut(s)	396, 546, 559
SsiI	CCGC	3 cut(s)	135, 303, 363
SspMI	CTAG	2 cut(s)	32, 488
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	2 cut(s)	6, 243
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	174, 204
TaqI	TCGA	3 cut(s)	204, 225, 576
TasI	AATT	3 cut(s)	396, 546, 559
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	109, 455
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	372, 644
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	546
Van91I	CCANNNNNTGG	2 cut(s)	89, 330
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	32, 488
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.