Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

17057693 .. 17060179

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCCCACAGATTCGCACCTAAAATATATACCCCACTCTCCACATGTCTTCTCTCGTCTTCTCGCACTGTTTCTCTCTACTCACTCTAAGTTCTTCGCAAGCAGCATTTCCATGGCTCTCCGAGCTCTCGTGGCCAGTAAAGCCCTCCGATTAGGTCTTCAGAGCGAGCCCAGAATCCTCGCCCATTCTCGCGGCCTGCAGACCTTCTCGCTCCCCGACCTTCCCTACGACTTTGGCGCCCTGGAGCCTGCAATCAGCGGCGAGATCATGCAGATCCACCACCAGAAGCACCACCAGGCTTACGTCACCAACTACAACAAAGCTCTCGAGCAGCTCCACGACGCCATCGGCAAGGGCGACGCTGCTGCCGTTGTTAAGTTGCAGAGCGCCATCAAGTTCAATGGCGGAGGTCATGTAAACCACTCGATTTTCTGGAAGAATCTGACTCCTGTTAGTCACGGTGGTGGCGAGCCCCCTCATGGTAACCTGGGCTGGGCTATTGACACAAATTTTGGAACTTTTGAAGCATTGGTGCAAAAGATCGATCCAGAAGGCGCTGCTTTGCAGGGTTCTGGATGGGTGTGGCTTGCTCTAGACAAAGAGTTTAACAAACTTGTGGTTGAAACCACCGCAAATCAGGATCCATTGGTTACTAAGGGAGCATCTTTGGTTCCATTACTTGGTATTGACGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTGAGACCAGATTATCTGAAGAACATATGGAAAGTCATCAACTGGAAGTATGCCAGTGAAGTGTACGAGAAAGAAAGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009410 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016043 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0022607 GO:0030145 GO:0031974 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0055114 GO:0065003 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0071840 GO:0072593 GO:0097237 GO:0097305 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

270

Amino Acids

29.89

Weight (kDa)

7.29

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	68 - 148	4.8e-33	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	160 - 262	1.6e-35	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccII	CGCG	1 cut(s)	192
AciI	CCGC	4 cut(s)	192, 258, 405, 630
AclWI	GGATC	4 cut(s)	268, 539, 635, 648
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	2 cut(s)	143, 764
AcyI	GRCGYC	2 cut(s)	237, 342
AfaI	GTAC	3 cut(s)	707, 719, 791
AfiI	CCNNNNNNNGG	3 cut(s)	479, 493, 680
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	400, 524, 623
AjnI	CCWGG	3 cut(s)	240, 294, 486
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	3 cut(s)	125, 323, 334
AluI	AGCT	3 cut(s)	125, 323, 334
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	4 cut(s)	268, 539, 635, 648
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	132, 193
ApeKI	GCWGC	5 cut(s)	102, 331, 362, 365, 557
ApoI	RAATTY	1 cut(s)	508
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AspLEI	GCGC	3 cut(s)	239, 389, 557
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	3 cut(s)	127, 171, 474
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	3 cut(s)	40, 50, 149
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	5 cut(s)	114, 343, 349, 352, 544
BccI	CCATC	3 cut(s)	353, 398, 570
BceAI	ACGGC	1 cut(s)	353
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	3 cut(s)	242, 296, 488
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	197
BfoI	RGCGCY	3 cut(s)	240, 390, 558
BisI	GCNGC	7 cut(s)	103, 193, 259, 332, 363, 366, 558
BlsI	GCNGC	7 cut(s)	104, 194, 260, 333, 364, 367, 559
Bme1390I	CCNGG	3 cut(s)	242, 296, 488
BmeT110I	CYCGRG	1 cut(s)	326
BmiI	GGNNCC	4 cut(s)	238, 246, 642, 672
BmrFI	CCNGG	3 cut(s)	242, 296, 488
BmsI	GCATC	1 cut(s)	671
BpiI	GAAGAC	3 cut(s)	40, 50, 149
BpmI	CTGGAG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	543
BsaHI	GRCGYC	2 cut(s)	237, 342
BsaI	GGTCTC	1 cut(s)	724
BsaJI	CCNNGG	3 cut(s)	111, 240, 487
BsaXI	ACNNNNNCTCC	4 cut(s)	399, 429, 689, 719
Bsc4I	CCNNNNNNNGG	3 cut(s)	479, 493, 680
Bse1I	ACTGG	3 cut(s)	135, 773, 780
BseBI	CCWGG	3 cut(s)	242, 296, 488
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	111, 240, 487
BseGI	GGATG	1 cut(s)	581
BseLI	CCNNNNNNNGG	3 cut(s)	479, 493, 680
BseNI	ACTGG	3 cut(s)	135, 773, 780
BseXI	GCAGC	5 cut(s)	114, 343, 349, 352, 544
BseYI	CCCAGC	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	134, 195
BshNI	GGYRCC	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	479, 493, 680
BsmAI	GTCTC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	134, 195
Bso31I	GGTCTC	1 cut(s)	724
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	127, 171, 474
Bsp143I	GATC	5 cut(s)	264, 273, 540, 544, 640
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	4 cut(s)	192, 258, 405, 630
BspANI	GGCC	2 cut(s)	134, 195
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	4 cut(s)	238, 246, 642, 672
BspMAI	CTGCAG	1 cut(s)	201
BspPI	GGATC	4 cut(s)	268, 539, 635, 648
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	724
BsrI	ACTGG	3 cut(s)	135, 773, 780
BssECI	CCNNGG	3 cut(s)	111, 240, 487
BssMI	GATC	5 cut(s)	264, 273, 540, 544, 640
BssNI	GRCGYC	2 cut(s)	237, 342
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	3 cut(s)	242, 296, 488
Bst4CI	ACNGT	3 cut(s)	69, 461, 717
BstACI	GRCGYC	2 cut(s)	237, 342
BstC8I	GCNNGC	7 cut(s)	100, 167, 197, 249, 470, 588, 702
BstDEI	CTNAG	2 cut(s)	87, 654
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	581
BstFNI	CGCG	1 cut(s)	192
BstH2I	RGCGCY	3 cut(s)	240, 390, 558
BstHHI	GCGC	3 cut(s)	239, 389, 557
BstKTI	GATC	5 cut(s)	267, 276, 543, 547, 643
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	5 cut(s)	264, 273, 540, 544, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 131, 140
BstNI	CCWGG	3 cut(s)	242, 296, 488
BstNSI	RCATGY	2 cut(s)	47, 704
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	3 cut(s)	240, 294, 486
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	114, 343, 349, 352, 544
BstV2I	GAAGAC	3 cut(s)	40, 50, 149
BstX2I	RGATCY	2 cut(s)	273, 640
BstYI	RGATCY	2 cut(s)	273, 640
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	134, 195
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	65, 787
Cac8I	GCNNGC	7 cut(s)	100, 167, 197, 249, 470, 588, 702
CfoI	GCGC	3 cut(s)	239, 389, 557
ClaI	ATCGAT	1 cut(s)	543
CseI	GACGC	2 cut(s)	350, 368
Csp6I	GTAC	3 cut(s)	706, 718, 790
CviAII	CATG	6 cut(s)	44, 112, 268, 413, 479, 701
CviQI	GTAC	3 cut(s)	706, 718, 790
DdeI	CTNAG	2 cut(s)	87, 654
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	5 cut(s)	266, 275, 542, 546, 642
DpnII	GATC	5 cut(s)	264, 273, 540, 544, 640
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	3 cut(s)	127, 171, 474
Eco31I	GGTCTC	1 cut(s)	724
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	143, 764
Eco88I	CYCGRG	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	125
EcoO65I	GGTNACC	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	240, 294, 486
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	3 cut(s)	127, 171, 474
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	6 cut(s)	47, 115, 271, 416, 482, 704
FatI	CATG	6 cut(s)	43, 111, 267, 412, 478, 700
FauNDI	CATATG	1 cut(s)	752
Fnu4HI	GCNGC	7 cut(s)	103, 193, 259, 332, 363, 366, 558
FokI	GGATG	1 cut(s)	588
FriOI	GRGCYC	3 cut(s)	127, 171, 474
Fsp4HI	GCNGC	7 cut(s)	103, 193, 259, 332, 363, 366, 558
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	3 cut(s)	238, 388, 556
GluI	GCNGC	7 cut(s)	103, 193, 259, 332, 363, 366, 558
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	3 cut(s)	240, 390, 558
HaeIII	GGCC	2 cut(s)	134, 195
HgaI	GACGC	2 cut(s)	350, 368
HhaI	GCGC	3 cut(s)	239, 389, 557
Hin1I	GRCGYC	2 cut(s)	237, 342
Hin1II	CATG	6 cut(s)	47, 115, 271, 416, 482, 704
Hin6I	GCGC	3 cut(s)	237, 387, 555
HinP1I	GCGC	3 cut(s)	237, 387, 555
HinfI	GANTC	4 cut(s)	11, 174, 439, 445
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	418, 790
Hpy188I	TCNGA	5 cut(s)	122, 149, 162, 444, 744
Hpy188III	TCNNGA	6 cut(s)	326, 433, 548, 573, 593, 638
Hpy8I	GTNNAC	2 cut(s)	418, 790
Hpy99I	CGWCG	2 cut(s)	344, 362
HpyAV	CCTTC	3 cut(s)	214, 230, 545
HpyCH4III	ACNGT	3 cut(s)	69, 461, 717
HpyCH4IV	ACGT	2 cut(s)	303, 690
HpyCH4V	TGCA	6 cut(s)	199, 251, 271, 382, 535, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 131, 140
HpyF3I	CTNAG	2 cut(s)	87, 654
HpySE526I	ACGT	2 cut(s)	303, 690
Hsp92I	GRCGYC	2 cut(s)	237, 342
Hsp92II	CATG	6 cut(s)	47, 115, 271, 416, 482, 704
HspAI	GCGC	3 cut(s)	237, 387, 555
KasI	GGCGCC	1 cut(s)	236
Kzo9I	GATC	5 cut(s)	264, 273, 540, 544, 640
LmnI	GCTCC	5 cut(s)	216, 244, 339, 659, 697
Lsp1109I	GCAGC	5 cut(s)	114, 343, 349, 352, 544
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	303, 690
MaeIII	GTNAC	4 cut(s)	304, 455, 482, 649
MalI	GATC	5 cut(s)	266, 275, 542, 546, 642
MboI	GATC	5 cut(s)	264, 273, 540, 544, 640
MboII	GAAGA	6 cut(s)	40, 50, 85, 149, 448, 757
MflI	RGATCY	2 cut(s)	273, 640
MhlI	GDGCHC	3 cut(s)	127, 171, 474
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	508
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	155, 188, 401, 486
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	2 cut(s)	375, 606
MslI	CAYNNNNRTG	2 cut(s)	110, 462
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	258
MspR9I	CCNGG	3 cut(s)	242, 296, 488
MvaI	CCWGG	3 cut(s)	242, 296, 488
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	122, 131, 140
NarI	GGCGCC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	5 cut(s)	264, 273, 540, 544, 640
NlaIII	CATG	6 cut(s)	47, 115, 271, 416, 482, 704
NlaIV	GGNNCC	4 cut(s)	238, 246, 642, 672
NmuCI	GTSAC	2 cut(s)	304, 455
NspI	RCATGY	2 cut(s)	47, 704
OliI	CACNNNNGTG	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	704
PaeR7I	CTCGAG	1 cut(s)	326
PciI	ACATGT	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 366, 465
PfeI	GAWTC	3 cut(s)	11, 174, 439
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	7 cut(s)	104, 194, 260, 333, 364, 367, 559
PleI	GAGTC	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	3 cut(s)	240, 294, 486
PspEI	GGTNACC	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	3 cut(s)	240, 294, 486
PspN4I	GGNNCC	4 cut(s)	238, 246, 642, 672
PstI	CTGCAG	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	273, 640
RsaI	GTAC	3 cut(s)	707, 719, 791
RsaNI	GTAC	3 cut(s)	706, 718, 790
RseI	CAYNNNNRTG	2 cut(s)	110, 462
SacI	GAGCTC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	375, 606
SatI	GCNGC	7 cut(s)	103, 193, 259, 332, 363, 366, 558
Sau3AI	GATC	5 cut(s)	264, 273, 540, 544, 640
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	3 cut(s)	242, 296, 488
SduI	GDGCHC	3 cut(s)	127, 171, 474
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	197
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	110, 462
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	1 cut(s)	508
SsiI	CCGC	4 cut(s)	192, 258, 405, 630
SspDI	GGCGCC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	3 cut(s)	240, 294, 486
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	69, 461, 717
TaiI	ACGT	2 cut(s)	306, 693
TaqI	TCGA	3 cut(s)	327, 425, 543
TasI	AATT	1 cut(s)	508
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	2 cut(s)	195, 261
TfiI	GAWTC	3 cut(s)	11, 174, 439
Tru1I	TTAA	2 cut(s)	375, 606
Tru9I	TTAA	2 cut(s)	375, 606
TscAI	CASTG	2 cut(s)	72, 787
TseFI	GTSAC	2 cut(s)	304, 455
TseI	GCWGC	5 cut(s)	102, 331, 362, 365, 557
Tsp45I	GTSAC	2 cut(s)	304, 455
TspRI	CASTG	2 cut(s)	72, 787
Van91I	CCANNNNNTGG	1 cut(s)	680
XapI	RAATTY	1 cut(s)	508
XbaI	TCTAGA	1 cut(s)	592
XceI	RCATGY	2 cut(s)	47, 704
XhoI	CTCGAG	1 cut(s)	326
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.