Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Reverse (-)

20893946 .. 20895634

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACGACCACCGTTATTATCATTATCTTCGTTGCCATCTTCGCTACGACTCTTCACGACGCCAGAGGAGCAACCATGGAACCGTGTCTCGAATCAATGAAGACTGCTTCGCTTCCTGATCTTCCGTATGCTTATGATGCGCTAGAGCCAGCAATCAGTGAGGAGATCATGCGGCTACACCATCAGAAACACCACCAGACTTATGTCACTCAGTACAACAAAGCCCTCAACAGCCTTCGTTCTGCCATGGCTGACGGTGATCACTCCTCCGTCGTCAAACTCCAAAGCCTCATCAAGTTCAACGGCGGAGGGCACGTTAACCATGCAATCTTCTGGAAAAACCTAGCCCCGGTTCATGAAGGAGGTGGCAAACCACCGCATGATCCTTTGGCTTCGGCGATCGATGCTCATTTCGGATCACTAGAAGGATTGATCCAAAAAATGAACGCGGAAGGCGCTGCTGTACAGGGATCTGGATGGGTGTGGTTTGGATTAGACAGAGAGCTTAAGAGACTTGTCGTTGAAACCACAGCCAACCAGGATCCATTGGTGACTAAGGGATCACACCTAGTTCCTCTAATTGGGATTGACGTGTGGGAGCATGCCTACTATCCACAGTACAAGAATGCAAGAGCGGAGTACTTGAAGAACATATGGACTGTAATCAACTGGAAATATGCAGCGGACGTCTTCGAGAAGCACACTCGTGATCTTGATATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0010035 GO:0010038 GO:0010043 GO:0010154 GO:0010227 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0061458 GO:0090567 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

241

Amino Acids

26.89

Weight (kDa)

6.25

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	37 - 116	7.9e-32	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	127 - 228	2e-34	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	690
AccBSI	CCGCTC	1 cut(s)	635
AccII	CGCG	1 cut(s)	449
AciI	CCGC	6 cut(s)	172, 306, 377, 449, 635, 683
AclWI	GGATC	7 cut(s)	377, 424, 427, 478, 536, 549, 568
AcyI	GRCGYC	2 cut(s)	60, 687
AfaI	GTAC	4 cut(s)	215, 465, 620, 641
AfiI	CCNNNNNNNGG	2 cut(s)	349, 581
AflII	CTTAAG	1 cut(s)	506
AflIII	ACRYGT	1 cut(s)	591
AgsI	TTSAA	3 cut(s)	301, 524, 646
AjiI	CACGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	537
AleI	CACNNNNGTG	1 cut(s)	705
AluBI	AGCT	1 cut(s)	505
AluI	AGCT	1 cut(s)	505
Alw26I	GTCTC	2 cut(s)	92, 505
AlwI	GGATC	7 cut(s)	377, 424, 427, 478, 536, 549, 568
ApeKI	GCWGC	2 cut(s)	458, 680
AspLEI	GCGC	2 cut(s)	142, 458
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	269, 562
BaeGI	GKGCMC	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	541
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	107, 682
BbvI	GCAGC	2 cut(s)	445, 692
BccI	CCATC	3 cut(s)	44, 189, 471
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	539
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	92, 505
BfaI	CTAG	4 cut(s)	143, 344, 422, 569
BfoI	RGCGCY	1 cut(s)	459
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	3 cut(s)	173, 459, 681
BlsI	GCNGC	3 cut(s)	174, 460, 682
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	2 cut(s)	350, 539
BmgBI	CACGTC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	81, 543
BmrFI	CCNGG	2 cut(s)	350, 539
BmsI	GCATC	2 cut(s)	127, 394
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	107, 682
BpuMI	CCSGG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	60, 687
BsaJI	CCNNGG	3 cut(s)	75, 246, 348
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	349, 581
Bse1I	ACTGG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	539
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	3 cut(s)	75, 246, 348
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	349, 581
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	3 cut(s)	81, 176, 256
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	445, 692
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	402
BsiEI	CGRYCG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	349, 581
BsmAI	GTCTC	2 cut(s)	92, 505
BsmI	GAATGC	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	463
Bsp19I	CCATGG	2 cut(s)	75, 246
BspACI	CCGC	6 cut(s)	172, 306, 377, 449, 635, 683
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	81, 543
BspPI	GGATC	7 cut(s)	377, 424, 427, 478, 536, 549, 568
BspTI	CTTAAG	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	674
BssECI	CCNNGG	3 cut(s)	75, 246, 348
BssNI	GRCGYC	2 cut(s)	60, 687
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	75, 246
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	5 cut(s)	13, 84, 257, 618, 661
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	2 cut(s)	60, 687
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	150, 603
BstDEI	CTNAG	2 cut(s)	210, 555
BstDSI	CCRYGG	2 cut(s)	75, 246
BstF5I	GGATG	1 cut(s)	482
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	142, 458
BstMAI	GTCTC	2 cut(s)	92, 505
BstMCI	CGRYCG	1 cut(s)	402
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 68, 137, 404, 455
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	605
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	348, 537
BstSLI	GKGCMC	1 cut(s)	315
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	445, 692
BstV2I	GAAGAC	2 cut(s)	107, 682
BstX2I	RGATCY	2 cut(s)	470, 541
BstYI	RGATCY	2 cut(s)	470, 541
Bsu15I	ATCGAT	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	2 cut(s)	75, 246
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	150, 603
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	2 cut(s)	142, 458
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	4 cut(s)	214, 464, 619, 640
CviAII	CATG	7 cut(s)	76, 169, 247, 323, 356, 380, 602
CviQI	GTAC	4 cut(s)	214, 464, 619, 640
DdeI	CTNAG	2 cut(s)	210, 555
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	75, 246
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	75, 246
ErhI	CCWWGG	2 cut(s)	75, 246
FaeI	CATG	7 cut(s)	79, 172, 250, 326, 359, 383, 605
FatI	CATG	7 cut(s)	75, 168, 246, 322, 355, 379, 601
FauNDI	CATATG	1 cut(s)	653
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	173, 459, 681
FokI	GGATG	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	173, 459, 681
FspBI	CTAG	4 cut(s)	143, 344, 422, 569
GlaI	GCGC	2 cut(s)	141, 457
GluI	GCNGC	3 cut(s)	173, 459, 681
HaeII	RGCGCY	1 cut(s)	459
HapII	CCGG	1 cut(s)	350
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	142, 458
Hin1I	GRCGYC	2 cut(s)	60, 687
Hin1II	CATG	7 cut(s)	79, 172, 250, 326, 359, 383, 605
Hin6I	GCGC	2 cut(s)	140, 456
HinP1I	GCGC	2 cut(s)	140, 456
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	49, 92
HpaI	GTTAAC	1 cut(s)	319
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	269, 562
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	186, 416
Hpy188III	TCNNGA	9 cut(s)	56, 89, 116, 334, 356, 474, 694, 707, 713
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	2 cut(s)	62, 275
HpyAV	CCTTC	4 cut(s)	245, 353, 419, 446
HpyCH4III	ACNGT	5 cut(s)	13, 84, 257, 618, 661
HpyCH4IV	ACGT	3 cut(s)	315, 591, 687
HpyCH4V	TGCA	3 cut(s)	326, 629, 680
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 68, 137, 404, 455
HpyF3I	CTNAG	2 cut(s)	210, 555
HpySE526I	ACGT	3 cut(s)	315, 591, 687
Hsp92I	GRCGYC	2 cut(s)	60, 687
Hsp92II	CATG	7 cut(s)	79, 172, 250, 326, 359, 383, 605
HspAI	GCGC	2 cut(s)	140, 456
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	68, 598
Lsp1109I	GCAGC	2 cut(s)	445, 692
LweI	GCATC	2 cut(s)	127, 394
MaeI	CTAG	4 cut(s)	143, 344, 422, 569
MaeII	ACGT	3 cut(s)	315, 591, 687
MaeIII	GTNAC	2 cut(s)	205, 550
MbiI	CCGCTC	1 cut(s)	635
MboII	GAAGA	8 cut(s)	19, 31, 44, 112, 113, 322, 658, 682
MflI	RGATCY	2 cut(s)	470, 541
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	579
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	59, 154, 236, 277, 299, 302, 356, 585
MseI	TTAA	3 cut(s)	318, 507, 720
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	683
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	350, 539
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	5 cut(s)	41, 68, 137, 404, 455
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	2 cut(s)	75, 246
NdeI	CATATG	1 cut(s)	653
NlaIII	CATG	7 cut(s)	79, 172, 250, 326, 359, 383, 605
NlaIV	GGNNCC	2 cut(s)	81, 543
NmuCI	GTSAC	2 cut(s)	205, 550
NspI	RCATGY	1 cut(s)	605
OliI	CACNNNNGTG	1 cut(s)	705
PaeI	GCATGC	1 cut(s)	605
PagI	TCATGA	1 cut(s)	355
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	174, 460, 682
Ple19I	CGATCG	1 cut(s)	402
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshAI	GACNNNNGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	81, 543
PsuI	RGATCY	2 cut(s)	470, 541
PvuI	CGATCG	1 cut(s)	402
RsaI	GTAC	4 cut(s)	215, 465, 620, 641
RsaNI	GTAC	4 cut(s)	214, 464, 619, 640
RseI	CAYNNNNRTG	1 cut(s)	705
SaqAI	TTAA	3 cut(s)	318, 507, 720
SatI	GCNGC	3 cut(s)	173, 459, 681
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	350, 539
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	318, 345, 367, 507, 570, 594, 690
SfaNI	GCATC	2 cut(s)	127, 394
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	1 cut(s)	579
SsiI	CCGC	6 cut(s)	172, 306, 377, 449, 635, 683
SspMI	CTAG	4 cut(s)	143, 344, 422, 569
StyD4I	CCNGG	2 cut(s)	348, 537
StyI	CCWWGG	2 cut(s)	75, 246
TaaI	ACNGT	5 cut(s)	13, 84, 257, 618, 661
TaiI	ACGT	3 cut(s)	318, 594, 690
TaqI	TCGA	3 cut(s)	90, 402, 693
TasI	AATT	1 cut(s)	579
TatI	WGTACW	4 cut(s)	213, 463, 618, 639
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	318, 507, 720
Tru9I	TTAA	3 cut(s)	318, 507, 720
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	2 cut(s)	205, 550
TseI	GCWGC	2 cut(s)	458, 680
Tsp45I	GTSAC	2 cut(s)	205, 550
TspDTI	ATGAA	4 cut(s)	113, 344, 372, 458
TspGWI	ACGGA	2 cut(s)	114, 259
TspRI	CASTG	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	506
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	4 cut(s)	143, 344, 422, 569
ZraI	GACGTC	1 cut(s)	688
ZrmI	AGTACT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.