Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Forward (+)

3110792 .. 3112912

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G042300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGCTGGGAGCTGTGAGCAGGAGAGGCCTAGCAGGTCTAAGCAGAAATAGCGGGGGCTTAGGGTTAGGGTTAGGGCTTGTGACAGTCCGTGGATTGAAGACCTTCACGCTGCCCGACCTGTCTTACGACTATGGGGAACTGGAGCCCTACATTAGCGGAGAGATCATGCAGCTCCACCACCAGAAGCACCACCAGACCTACGTCACCAACTTCAACAAAGCCCTCGAGCACCTTGACCAGGCCATGGCCAAAGGCCACTCCCCCACCATCGTCAAATTACAGAGCGCCATCAAATTCAACGGCGGAGGTCATATAAACCACTCTGTTTTCTGGAAAAATCTGACCCCTGTTCGAGAAGGAGGTGGTGAGCCTCCAAAGGATTCCTTAGCACGGGCAGTTGAGAATCAGTTTGGTTCCTTAGATTCCCTGATTCAGAAAGTGAATGTAGAAGGGGCTGCTTTGCAAGGTTCTGGTTGGGTGTGGCTTGCTCTTGACAAAGATCAGAAGAGGCTTTCTATTGAAACCACATTCAATCAGGATCCGCTTGTTGCCAAAGGATCAAGTTATGTTCCTCTCCTGGGGATAGATGTATGGGAACATGCTTACTACTTGCAGTACAAAAACGTGAGGCCAGATTATCTTAAGAACATATGGAAGGTTATTAACTGGAAATATGCAAGCGATGTGTATGAGAAAGAATGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

237

Amino Acids

26.26

Weight (kDa)

8.48

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	4 cut(s)	54, 159, 306, 545
AclWI	GGATC	3 cut(s)	536, 549, 568
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	296
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	4 cut(s)	241, 247, 393, 581
AflII	CTTAAG	1 cut(s)	644
AgsI	TTSAA	5 cut(s)	100, 217, 301, 524, 535
AjnI	CCWGG	2 cut(s)	240, 579
AluBI	AGCT	2 cut(s)	14, 175
AluI	AGCT	2 cut(s)	14, 175
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	3 cut(s)	536, 549, 568
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	5 cut(s)	28, 243, 249, 256, 632
ApeKI	GCWGC	3 cut(s)	112, 172, 458
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	7, 290
AsuHPI	GGTGA	2 cut(s)	199, 380
AvaI	CYCGRG	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	99, 184, 445
BccI	CCATC	2 cut(s)	278, 299
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	242, 581
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	2 cut(s)	8, 291
BfrI	CTTAAG	1 cut(s)	644
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	113, 173, 459
BlsI	GCNGC	3 cut(s)	114, 174, 460
Bme1390I	CCNGG	2 cut(s)	242, 581
BmeT110I	CYCGRG	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	147, 418, 543
BmrFI	CCNGG	2 cut(s)	242, 581
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	2 cut(s)	61, 388
BsaJI	CCNNGG	3 cut(s)	91, 246, 580
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 247, 393, 581
Bse1I	ACTGG	2 cut(s)	147, 674
BseBI	CCWGG	2 cut(s)	242, 581
BseDI	CCNNGG	3 cut(s)	91, 246, 580
BseLI	CCNNNNNNNGG	4 cut(s)	241, 247, 393, 581
BseNI	ACTGG	2 cut(s)	147, 674
BseXI	GCAGC	3 cut(s)	99, 184, 445
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	5 cut(s)	30, 245, 251, 258, 634
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	227
BslI	CCNNNNNNNGG	4 cut(s)	241, 247, 393, 581
BsnI	GGCC	5 cut(s)	30, 245, 251, 258, 634
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	150, 234
Bsp143I	GATC	4 cut(s)	165, 502, 541, 560
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	4 cut(s)	54, 159, 306, 545
BspANI	GGCC	5 cut(s)	30, 245, 251, 258, 634
BspLI	GGNNCC	3 cut(s)	147, 418, 543
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	536, 549, 568
BspTI	CTTAAG	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	147, 674
BssECI	CCNNGG	3 cut(s)	91, 246, 580
BssMI	GATC	4 cut(s)	165, 502, 541, 560
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	242, 581
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	503
BstAFI	CTTAAG	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	489, 682
BstDEI	CTNAG	4 cut(s)	41, 61, 388, 421
BstDSI	CCRYGG	2 cut(s)	91, 246
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstH2I	RGCGCY	2 cut(s)	8, 291
BstHHI	GCGC	2 cut(s)	7, 290
BstKTI	GATC	4 cut(s)	168, 505, 544, 563
BstMBI	GATC	4 cut(s)	165, 502, 541, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 27, 51
BstNI	CCWGG	2 cut(s)	242, 581
BstNSI	RCATGY	1 cut(s)	605
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	240, 579
BstV1I	GCAGC	3 cut(s)	99, 184, 445
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	5 cut(s)	30, 245, 251, 258, 634
BtgI	CCRYGG	2 cut(s)	91, 246
BtgZI	GCGATG	1 cut(s)	699
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	489, 682
CfoI	GCGC	2 cut(s)	7, 290
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	3 cut(s)	169, 247, 602
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	4 cut(s)	41, 61, 388, 421
DpnI	GATC	4 cut(s)	167, 504, 543, 562
DpnII	GATC	4 cut(s)	165, 502, 541, 560
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	240, 579
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	172, 250, 605
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	3 cut(s)	168, 246, 601
FauI	CCCGC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	653
Fnu4HI	GCNGC	3 cut(s)	113, 173, 459
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	113, 173, 459
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	6, 289
GluI	GCNGC	3 cut(s)	113, 173, 459
GsaI	CCCAGC	1 cut(s)	11
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	2 cut(s)	8, 291
HaeIII	GGCC	5 cut(s)	30, 245, 251, 258, 634
HhaI	GCGC	2 cut(s)	7, 290
Hin1II	CATG	3 cut(s)	172, 250, 605
Hin6I	GCGC	2 cut(s)	5, 288
HinP1I	GCGC	2 cut(s)	5, 288
HinfI	GANTC	4 cut(s)	383, 406, 425, 433
HphI	GGTGA	2 cut(s)	199, 380
Hpy188I	TCNGA	3 cut(s)	345, 438, 507
Hpy188III	TCNNGA	4 cut(s)	334, 356, 494, 539
HpyAV	CCTTC	4 cut(s)	115, 353, 446, 652
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	204, 627
HpyCH4V	TGCA	4 cut(s)	172, 466, 616, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 27, 51
HpyF3I	CTNAG	4 cut(s)	41, 61, 388, 421
HpySE526I	ACGT	2 cut(s)	204, 627
Hsp92II	CATG	3 cut(s)	172, 250, 605
HspAI	GCGC	2 cut(s)	5, 288
Kzo9I	GATC	4 cut(s)	165, 502, 541, 560
LmnI	GCTCC	3 cut(s)	11, 145, 180
Lsp1109I	GCAGC	3 cut(s)	99, 184, 445
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	2 cut(s)	204, 627
MaeIII	GTNAC	2 cut(s)	82, 205
MalI	GATC	4 cut(s)	167, 504, 543, 562
MboI	GATC	4 cut(s)	165, 502, 541, 560
MboII	GAAGA	2 cut(s)	112, 520
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	150, 234
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	2 cut(s)	278, 296
MluNI	TGGCCA	1 cut(s)	251
MnlI	CCTC	8 cut(s)	20, 236, 302, 356, 384, 504, 585, 624
Mox20I	TGGCCA	1 cut(s)	251
MroXI	GAANNNNTTC	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	2 cut(s)	645, 666
Msp20I	TGGCCA	1 cut(s)	251
MspCI	CTTAAG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	242, 581
MvaI	CCWGG	2 cut(s)	242, 581
MwoI	GCNNNNNNNGC	3 cut(s)	11, 27, 51
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	653
NdeII	GATC	4 cut(s)	165, 502, 541, 560
NlaIII	CATG	3 cut(s)	172, 250, 605
NlaIV	GGNNCC	3 cut(s)	147, 418, 543
NmuCI	GTSAC	2 cut(s)	82, 205
NspI	RCATGY	1 cut(s)	605
PaeR7I	CTCGAG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	4 cut(s)	383, 406, 425, 433
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	114, 174, 460
PshAI	GACNNNNGTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	240, 579
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	240, 579
PspN4I	GGNNCC	3 cut(s)	147, 418, 543
PspXI	VCTCGAGB	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	541
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	645, 666
SatI	GCNGC	3 cut(s)	113, 173, 459
Sau3AI	GATC	4 cut(s)	165, 502, 541, 560
ScrFI	CCNGG	2 cut(s)	242, 581
SduI	GDGCHC	2 cut(s)	150, 234
Sfr274I	CTCGAG	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	227, 644
SmoI	CTYRAG	2 cut(s)	227, 644
Sse9I	AATT	2 cut(s)	278, 296
SseBI	AGGCCT	1 cut(s)	30
SsiI	CCGC	4 cut(s)	54, 159, 306, 545
SspMI	CTAG	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	240, 579
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	207, 630
TaqI	TCGA	2 cut(s)	228, 355
TasI	AATT	2 cut(s)	278, 296
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	4 cut(s)	383, 406, 425, 433
Tru1I	TTAA	2 cut(s)	645, 666
Tru9I	TTAA	2 cut(s)	645, 666
TseFI	GTSAC	2 cut(s)	82, 205
TseI	GCWGC	3 cut(s)	112, 172, 458
Tsp45I	GTSAC	2 cut(s)	82, 205
TspGWI	ACGGA	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	644
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	605
XhoI	CTCGAG	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.