Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004197

Physical Location & Seq

Genomic Coordinates Reverse (-)

78772099 .. 78776291

Gene Structure 4193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCCTGGGAACTCTTAGCAGGAAAACCCTAGCGGGTCTAACCAGAAATGGCAATGGAGGCTTAGGCTTCGGGCTCGTTCTAGTCAGTGGCCCAAAGACCTTCGCGCTGCCGGACCTGCCATGGGGCTATGCCGCACTTGAGCCCTACATTAGCGGCGAGATCATGGACCTCCATCACCTGAAGCACCACAAGACCTACGTCGACAACTTCAACAAGGCCCTCGACAACCTCAAATGGGCCATGGATACCGGCGACTCCTCCATCGTCGTCAAGTTGCAGAGCGCCCTCAAGTTCAACGGCGGAGGTTTAGAAGGAGGTGGTGAGCCTCCAAAGGGTTCATTGGGATGGGAAATTGACAATCAGTTTGGTTCCTTACAAAGTCTGAAACAGAAAATGATGGTAGAAGAGGCTGTAGAAAACCTAATGGGTAGACCTCTAGGGTTCTTCAGATCTTTCGGCAGTGGTCATCAATTCAATTTCAGGGAAAAGCATGATAAGGGTAGAATTGTAACCTCCAACTTCACTTGTTTCTCTGCAAAGCTTGCCCAGGAAAATGTAAGTATGTGGCACTTTTCCTCGTTCAATTTGGTCAGTGATTCTTTTGGCTGGAGGAAAAGGAAAAAGGATGGGTGCCAGTATGCCGAAATAGATTATTCAATTAGAATGGTGAAACAGCACATGCATTGTGCACTTTATGTGATTGAAATGGAGAACAATTTTGGGATTACTGACAACAATTTATTGTGGTTGTCAAATGCATGGATTGAGGGGACATTTTCACAATGCAATTGTAAACCATTTTATCTACACGTGTTGTGCTCAGTTTGCTGGTTCTCTGCCATTTATTTTTGTTGTGCATTATTGAAACGTTGCATCAATGGCTACTTATTTCTTTATTGTTGGTCAAGTCTTACTTCTCTCTTTAACTTTGCAGGTTGTAGCTCCTATCAAAATGACATTCGAAATGAAAGTGACTTAGGTTATCGTCTGAGTTCAATTTGTTTTTCTTATTGTTTCTTCATGTGGCAGATATGCAACATGTGGATTACCAAAAAGTGTCTTCTTTGCTTCAAGTCTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0031974 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

362

Amino Acids

41.1

Weight (kDa)

8.49

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	34 - 103	1.4e-22	Iron/manganese superoxide dismutases, alpha-hairpin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10920 AT3G10920 AT3G56350
fragaria_vesca	FvH4_7g25730
malus_domestica	MD01G1164700.v1.1 MD07G1232200.v1.1
prunus_persica	Prupe.2G262400_v2.0.a1 Prupe.2G262400_v2.0.a1 Prupe.6G042300_v2.0.a1 Prupe.6G042300_v2.0.a1
pyrus_communis	pycom01g17880 pycom07g21000
rosa_chinensis	RchiOBHm_Chr1g0371971 RchiOBHm_Chr5g0072721 RchiOBHm_Chr5g0072741
rosa_laevigata	RLG00000026932 RLG00000036327 RLG00000036328
rosa_multiflora	Rmu_sc0001755.1_g000040 Rmu_sc0003160.1_g000031
rosa_roxburghii	Rroxscaffold_1G00008440 Rroxscaffold_4G00285350
rosa_rugosa	Rorug01G0367500 Rorug05G0419500
rosa_samantha	Rh1AG377300 Rh1BG340700 Rh1CG353800 Rh1DG371600 Rh5AG476700 Rh5BG496600 Rh5CG520400
rosa_wichuraiana	Rw1G033200 Rw5G044240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	126, 926
AccB1I	GGYRCC	1 cut(s)	633
AccI	GTMKAC	2 cut(s)	204, 433
AccII	CGCG	1 cut(s)	107
AciI	CCGC	4 cut(s)	35, 135, 156, 303
AclI	AACGTT	1 cut(s)	871
AcuI	CTGAAG	2 cut(s)	203, 433
AcvI	CACGTG	1 cut(s)	814
AfiI	CCNNNNNNNGG	3 cut(s)	124, 238, 335
AflIII	ACRYGT	3 cut(s)	811, 813, 1041
AgsI	TTSAA	9 cut(s)	214, 298, 478, 586, 660, 707, 868, 999, 1075
AjnI	CCWGG	2 cut(s)	6, 549
AluBI	AGCT	2 cut(s)	544, 945
AluI	AGCT	2 cut(s)	544, 945
Alw21I	GWGCWC	2 cut(s)	694, 824
Alw44I	GTGCAC	1 cut(s)	690
AoxI	GGCC	4 cut(s)	3, 91, 219, 240
ApaLI	GTGCAC	1 cut(s)	690
ApeKI	GCWGC	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AspLEI	GCGC	2 cut(s)	109, 287
AspS9I	GGNCC	6 cut(s)	4, 92, 115, 169, 220, 240
AsuHPI	GGTGA	3 cut(s)	170, 335, 682
AsuII	TTCGAA	1 cut(s)	964
AvaII	GGWCC	2 cut(s)	115, 169
BaeGI	GKGCMC	1 cut(s)	694
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	2 cut(s)	78, 147
BbrPI	CACGTG	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	1055
Bbv12I	GWGCWC	2 cut(s)	694, 824
BbvI	GCAGC	1 cut(s)	96
BccI	CCATC	5 cut(s)	183, 272, 342, 394, 623
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	8, 551
BciVI	GTATCC	1 cut(s)	241
BfaI	CTAG	3 cut(s)	32, 83, 440
BfmI	CTRYAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	288
BfuAI	ACCTGC	2 cut(s)	126, 926
BfuI	GTATCC	1 cut(s)	241
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	3 cut(s)	110, 135, 157
BlsI	GCNGC	3 cut(s)	111, 136, 158
Bme1390I	CCNGG	2 cut(s)	8, 551
Bme18I	GGWCC	2 cut(s)	115, 169
BmgT120I	GGNCC	6 cut(s)	4, 92, 115, 169, 220, 240
BmiI	GGNNCC	2 cut(s)	373, 635
BmrFI	CCNGG	2 cut(s)	8, 551
BmsI	GCATC	1 cut(s)	885
BoxI	GACNNNNGTC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	1055
BpmI	CTGGAG	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	964
BpuEI	CTTGAG	2 cut(s)	161, 275
BsaAI	YACGTR	1 cut(s)	814
BsaJI	CCNNGG	5 cut(s)	6, 7, 122, 243, 549
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 238, 335
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	637
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	8, 551
BseDI	CCNNGG	5 cut(s)	6, 7, 122, 243, 549
BseGI	GGATG	2 cut(s)	353, 634
BseLI	CCNNNNNNNGG	3 cut(s)	124, 238, 335
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	837, 983
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	694
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	4 cut(s)	5, 93, 221, 242
BshNI	GGYRCC	1 cut(s)	633
BsiHKAI	GWGCWC	2 cut(s)	694, 824
BsiSI	CCGG	2 cut(s)	113, 252
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	3 cut(s)	124, 238, 335
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	4 cut(s)	5, 93, 221, 242
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	4 cut(s)	78, 147, 694, 824
Bsp143I	GATC	2 cut(s)	162, 452
Bsp19I	CCATGG	2 cut(s)	122, 243
BspACI	CCGC	4 cut(s)	35, 135, 156, 303
BspANI	GGCC	4 cut(s)	5, 93, 221, 242
BspCNI	CTCAG	2 cut(s)	836, 984
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	373, 635
BspMI	ACCTGC	2 cut(s)	126, 926
BspT104I	TTCGAA	1 cut(s)	964
BspT107I	GGYRCC	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	5 cut(s)	6, 7, 122, 243, 549
BssMI	GATC	2 cut(s)	162, 452
BssT1I	CCWWGG	2 cut(s)	122, 243
Bst2UI	CCWGG	2 cut(s)	8, 551
Bst6I	CTCTTC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	1 cut(s)	546
BstDEI	CTNAG	5 cut(s)	17, 64, 823, 979, 992
BstDSI	CCRYGG	2 cut(s)	122, 243
BstF5I	GGATG	2 cut(s)	353, 634
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	109, 287
BstKTI	GATC	2 cut(s)	165, 455
BstMBI	GATC	2 cut(s)	162, 452
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 118, 545, 828, 882
BstNI	CCWGG	2 cut(s)	8, 551
BstNSI	RCATGY	2 cut(s)	685, 1045
BstPAI	GACNNNNGTC	1 cut(s)	200
BstSCI	CCNGG	2 cut(s)	6, 549
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	694
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	1055
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	4 cut(s)	5, 93, 221, 242
BtgI	CCRYGG	2 cut(s)	122, 243
BtsCI	GGATG	2 cut(s)	353, 634
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	3 cut(s)	94, 469, 601
BveI	ACCTGC	2 cut(s)	126, 926
Cac8I	GCNNGC	1 cut(s)	546
CfoI	GCGC	2 cut(s)	109, 287
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	6 cut(s)	4, 92, 115, 169, 220, 240
CviAII	CATG	8 cut(s)	123, 166, 244, 494, 682, 762, 1024, 1042
DdeI	CTNAG	5 cut(s)	17, 64, 823, 979, 992
DpnI	GATC	2 cut(s)	164, 454
DpnII	GATC	2 cut(s)	162, 452
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	122, 243
Eco24I	GRGCYC	2 cut(s)	78, 147
Eco47I	GGWCC	2 cut(s)	115, 169
Eco57I	CTGAAG	2 cut(s)	203, 433
Eco72I	CACGTG	1 cut(s)	814
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	6, 549
EcoT14I	CCWWGG	2 cut(s)	122, 243
EcoT22I	ATGCAT	2 cut(s)	687, 763
EcoT38I	GRGCYC	2 cut(s)	78, 147
ErhI	CCWWGG	2 cut(s)	122, 243
FaeI	CATG	8 cut(s)	126, 169, 247, 497, 685, 765, 1027, 1045
FalI	AAGNNNNNCTT	2 cut(s)	901, 933
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	8 cut(s)	122, 165, 243, 493, 681, 761, 1023, 1041
FauI	CCCGC	1 cut(s)	28
FblI	GTMKAC	2 cut(s)	204, 433
Fnu4HI	GCNGC	3 cut(s)	110, 135, 157
FokI	GGATG	2 cut(s)	360, 641
FriOI	GRGCYC	2 cut(s)	78, 147
Fsp4HI	GCNGC	3 cut(s)	110, 135, 157
FspBI	CTAG	3 cut(s)	32, 83, 440
GlaI	GCGC	2 cut(s)	108, 286
GluI	GCNGC	3 cut(s)	110, 135, 157
GsuI	CTGGAG	1 cut(s)	631
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	4 cut(s)	5, 93, 221, 242
HapII	CCGG	2 cut(s)	113, 252
HhaI	GCGC	2 cut(s)	109, 287
Hin1II	CATG	8 cut(s)	126, 169, 247, 497, 685, 765, 1027, 1045
Hin6I	GCGC	2 cut(s)	107, 285
HinP1I	GCGC	2 cut(s)	107, 285
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	2 cut(s)	257, 599
HpaII	CCGG	2 cut(s)	113, 252
HphI	GGTGA	3 cut(s)	170, 335, 682
Hpy166II	GTNNAC	4 cut(s)	205, 434, 692, 797
Hpy188I	TCNGA	3 cut(s)	387, 452, 993
Hpy8I	GTNNAC	4 cut(s)	205, 434, 692, 797
Hpy99I	CGWCG	2 cut(s)	206, 272
HpyAV	CCTTC	2 cut(s)	112, 308
HpyCH4IV	ACGT	3 cut(s)	201, 813, 871
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 118, 545, 828, 882
HpyF3I	CTNAG	5 cut(s)	17, 64, 823, 979, 992
HpySE526I	ACGT	3 cut(s)	201, 813, 871
Hsp92II	CATG	8 cut(s)	126, 169, 247, 497, 685, 765, 1027, 1045
HspAI	GCGC	2 cut(s)	107, 285
Kzo9I	GATC	2 cut(s)	162, 452
LmnI	GCTCC	1 cut(s)	950
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	885
MaeI	CTAG	3 cut(s)	32, 83, 440
MaeII	ACGT	3 cut(s)	201, 813, 871
MaeIII	GTNAC	2 cut(s)	511, 974
MalI	GATC	2 cut(s)	164, 454
MboI	GATC	2 cut(s)	162, 452
MboII	GAAGA	4 cut(s)	419, 439, 1012, 1055
MfeI	CAATTG	1 cut(s)	790
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	4 cut(s)	78, 147, 694, 824
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	543
Mph1103I	ATGCAT	2 cut(s)	687, 763
MseI	TTAA	1 cut(s)	927
MslI	CAYNNNNRTG	1 cut(s)	346
MspI	CCGG	2 cut(s)	113, 252
MspR9I	CCNGG	2 cut(s)	8, 551
MunI	CAATTG	1 cut(s)	790
MvaI	CCWGG	2 cut(s)	8, 551
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	5 cut(s)	60, 118, 545, 828, 882
NcoI	CCATGG	2 cut(s)	122, 243
NdeII	GATC	2 cut(s)	162, 452
NlaIII	CATG	8 cut(s)	126, 169, 247, 497, 685, 765, 1027, 1045
NlaIV	GGNNCC	2 cut(s)	373, 635
NmuCI	GTSAC	1 cut(s)	974
NsiI	ATGCAT	2 cut(s)	687, 763
NspI	RCATGY	2 cut(s)	685, 1045
NspV	TTCGAA	1 cut(s)	964
PasI	CCCWGGG	1 cut(s)	7
PciI	ACATGT	1 cut(s)	1041
PfeI	GAWTC	1 cut(s)	599
PkrI	GCNGC	3 cut(s)	111, 136, 158
PleI	GAGTC	1 cut(s)	251
PmaCI	CACGTG	1 cut(s)	814
PmlI	CACGTG	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	814
PscI	ACATGT	1 cut(s)	1041
PshAI	GACNNNNGTC	1 cut(s)	200
Psp1406I	AACGTT	1 cut(s)	871
Psp6I	CCWGG	2 cut(s)	6, 549
PspCI	CACGTG	1 cut(s)	814
PspGI	CCWGG	2 cut(s)	6, 549
PspN4I	GGNNCC	2 cut(s)	373, 635
PspPI	GGNCC	6 cut(s)	4, 92, 115, 169, 220, 240
PsuI	RGATCY	1 cut(s)	452
RseI	CAYNNNNRTG	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	927
SatI	GCNGC	3 cut(s)	110, 135, 157
Sau3AI	GATC	2 cut(s)	162, 452
Sau96I	GGNCC	6 cut(s)	4, 92, 115, 169, 220, 240
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	8, 551
SduI	GDGCHC	4 cut(s)	78, 147, 694, 824
SfaNI	GCATC	1 cut(s)	885
SfcI	CTRYAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	2 cut(s)	115, 169
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	140, 290
SmoI	CTYRAG	2 cut(s)	140, 290
SsiI	CCGC	4 cut(s)	35, 135, 156, 303
SspMI	CTAG	3 cut(s)	32, 83, 440
StyD4I	CCNGG	2 cut(s)	6, 549
StyI	CCWWGG	2 cut(s)	122, 243
TaiI	ACGT	3 cut(s)	204, 816, 874
TaqI	TCGA	3 cut(s)	204, 225, 964
TauI	GCSGC	2 cut(s)	137, 159
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	1 cut(s)	927
Tru9I	TTAA	1 cut(s)	927
TscAI	CASTG	3 cut(s)	94, 469, 601
TseFI	GTSAC	1 cut(s)	974
TseI	GCWGC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	3 cut(s)	330, 984, 1012
TspRI	CASTG	3 cut(s)	94, 469, 601
VneI	GTGCAC	1 cut(s)	690
VpaK11BI	GGWCC	2 cut(s)	115, 169
XceI	RCATGY	2 cut(s)	685, 1045
XmiI	GTMKAC	2 cut(s)	204, 433
XspI	CTAG	3 cut(s)	32, 83, 440
Zsp2I	ATGCAT	2 cut(s)	687, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.