AT3G11050

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008237
Physical Location & Seq
Forward (+)
3463477 .. 3465506
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11050.1

Sequence Viewer

Length: 762 bp
ATGTTGCACAAGGCTTCTCCCGCTCTCTCTCTCTTGAGCTCCGGCTACACCGGCGGTGGAAATCTGTTTCCTCCGTCGAGAAATTCGTCGAATCTTCTGTTTTCTCCGAGTGGATCCAGGTTTTCTGTTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGTATTCGAACCTTTTGAGGAGGTGAAGAAAGAAATGGAGCTCGTTCCCACTACCCCTTTTGTTTCTCTCGCTCGCCACAAGTTCTCCGACGATTCTGAATCTGCCATCAACGATCAGATCAACGTGGAGTACAACGTCTCGTATGTCTACCATGCCCTGTATGCCTACTTTGACAGAGACAATGTCGGCTTGAAAGGTTTCGCCAAGTTTTTTAACGATTCGAGTCTTGAAGAACGAGGTCATGCTGAGATGTTTATGGAGTATCAGAACAAGCGTGGTGGGAGAGTGAAGCTGCAGTCTATTTTGATGCCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGAGCTTGCATTGTCTTTGGAGAAACTTACAAATGAAAAGCTTCTGAAGTTACAAAGTGTTGGTGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGAATCTGAGTTTCTAGGCGAGCAGGTCGAAGCTATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGGTCATGGAGTGTGGCATTTTGATCAAATGCTTCTCAATGATGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097305 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

253

Amino Acids

28.38

Weight (kDa)

5.53

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 92 - 235 2.8e-30 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 643
AccBSI CCGCTC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 318
AciI CCGC 3 cut(s) 21, 54, 134
AclWI GGATC 2 cut(s) 108, 121
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 2 cut(s) 302, 683
AgsI TTSAA 2 cut(s) 364, 401
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 8 cut(s) 39, 211, 463, 535, 571, 616, 662, 694
AluI AGCT 8 cut(s) 39, 211, 463, 535, 571, 616, 662, 694
Alw21I GWGCWC 2 cut(s) 41, 213
Alw26I GTCTC 3 cut(s) 313, 342, 490
AlwI GGATC 2 cut(s) 108, 121
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
Asp700I GAANNNNTTC 2 cut(s) 368, 570
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 177
BamHI GGATCC 1 cut(s) 113
BanII GRGCYC 2 cut(s) 41, 213
BauI CACGAG 1 cut(s) 500
Bbv12I GWGCWC 2 cut(s) 41, 213
BbvI GCAGC 1 cut(s) 450
BccI CCATC 2 cut(s) 284, 523
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 2 cut(s) 496, 733
BcoDI GTCTC 3 cut(s) 313, 342, 490
BfaI CTAG 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 643
BisI GCNGC 2 cut(s) 135, 464
BlsI GCNGC 2 cut(s) 136, 465
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 468, 505
Bpu14I TTCGAA 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse118I RCCGGY 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 518
BseBI CCWGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 518
BseMII CTCAG 4 cut(s) 408, 480, 627, 690
BseRI GAGGAG 2 cut(s) 203, 518
BseXI GCAGC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 41, 213
BsiSI CCGG 3 cut(s) 42, 51, 165
BsmAI GTCTC 3 cut(s) 313, 342, 490
BsmBI CGTCTC 2 cut(s) 313, 490
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 41, 213
Bsp143I GATC 5 cut(s) 113, 283, 288, 496, 733
BspACI CCGC 3 cut(s) 21, 54, 134
BspCNI CTCAG 4 cut(s) 409, 481, 628, 689
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 643
BspPI GGATC 2 cut(s) 108, 121
BspT104I TTCGAA 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 518
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 5 cut(s) 113, 283, 288, 496, 733
BssSI CACGAG 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 4 cut(s) 244, 525, 537, 650
BstDEI CTNAG 5 cut(s) 417, 489, 636, 676, 695
BstKTI GATC 5 cut(s) 116, 286, 291, 499, 736
BstMAI GTCTC 3 cut(s) 313, 342, 490
BstMBI GATC 5 cut(s) 113, 283, 288, 496, 733
BstMWI GCNNNNNNNGC 4 cut(s) 20, 51, 332, 524
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 542
BveI ACCTGC 1 cut(s) 643
Cac8I GCNNGC 4 cut(s) 244, 525, 537, 650
Cfr10I RCCGGY 1 cut(s) 50
Csp6I GTAC 2 cut(s) 301, 682
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 4 cut(s) 323, 413, 524, 716
CviQI GTAC 2 cut(s) 301, 682
DdeI CTNAG 5 cut(s) 417, 489, 636, 676, 695
DpnI GATC 5 cut(s) 115, 285, 290, 498, 735
DpnII GATC 5 cut(s) 113, 283, 288, 496, 733
Ecl136II GAGCTC 2 cut(s) 39, 211
Eco24I GRGCYC 2 cut(s) 41, 213
Eco53kI GAGCTC 2 cut(s) 39, 211
Eco57I CTGAAG 1 cut(s) 596
EcoICRI GAGCTC 2 cut(s) 39, 211
EcoRII CCWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 2 cut(s) 41, 213
Esp3I CGTCTC 2 cut(s) 313, 490
FaeI CATG 4 cut(s) 326, 416, 527, 719
FaiI YATR 7 cut(s) 315, 324, 333, 414, 428, 525, 717
FatI CATG 4 cut(s) 322, 412, 523, 715
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 2 cut(s) 496, 733
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 135, 464
FriOI GRGCYC 2 cut(s) 41, 213
Fsp4HI GCNGC 2 cut(s) 135, 464
FspBI CTAG 1 cut(s) 644
GluI GCNGC 2 cut(s) 135, 464
HapII CCGG 3 cut(s) 42, 51, 165
Hin1II CATG 4 cut(s) 326, 416, 527, 719
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 6 cut(s) 91, 263, 269, 389, 394, 632
HpaI GTTAAC 1 cut(s) 162
HpaII CCGG 3 cut(s) 42, 51, 165
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 162, 319
Hpy188I TCNGA 9 cut(s) 108, 259, 268, 288, 438, 490, 576, 637, 679
Hpy188III TCNNGA 5 cut(s) 34, 78, 398, 500, 667
Hpy8I GTNNAC 2 cut(s) 162, 319
Hpy99I CGWCG 3 cut(s) 79, 91, 263
HpyAV CCTTC 1 cut(s) 502
HpyCH4IV ACGT 3 cut(s) 294, 306, 684
HpyCH4V TGCA 6 cut(s) 7, 466, 518, 523, 539, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 51, 332, 524
HpyF3I CTNAG 5 cut(s) 417, 489, 636, 676, 695
HpySE526I ACGT 3 cut(s) 294, 306, 684
Hsp92II CATG 4 cut(s) 326, 416, 527, 719
Ksp22I TGATCA 2 cut(s) 496, 733
KspAI GTTAAC 1 cut(s) 162
Kzo9I GATC 5 cut(s) 113, 283, 288, 496, 733
LmnI GCTCC 3 cut(s) 44, 208, 532
LpnPI CCDG 9 cut(s) 55, 64, 103, 116, 130, 178, 341, 602, 638
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 2 cut(s) 468, 505
MaeI CTAG 1 cut(s) 644
MaeII ACGT 3 cut(s) 294, 306, 684
MaeIII GTNAC 1 cut(s) 579
MalI GATC 5 cut(s) 115, 285, 290, 498, 735
MbiI CCGCTC 1 cut(s) 23
MboI GATC 5 cut(s) 113, 283, 288, 496, 733
MboII GAAGA 5 cut(s) 86, 208, 413, 610, 711
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 41, 213
MluCI AATT 1 cut(s) 82
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 6 cut(s) 81, 181, 184, 401, 496, 748
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 2 cut(s) 368, 570
MseI TTAA 3 cut(s) 161, 384, 760
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 3 cut(s) 42, 51, 165
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 20, 51, 332, 524
NdeII GATC 5 cut(s) 113, 283, 288, 496, 733
NlaIII CATG 4 cut(s) 326, 416, 527, 719
NlaIV GGNNCC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 527
NspV TTCGAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PdmI GAANNNNTTC 2 cut(s) 368, 570
PfeI GAWTC 5 cut(s) 91, 263, 269, 389, 632
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 136, 465
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
Psp124BI GAGCTC 2 cut(s) 41, 213
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 468
PsuI RGATCY 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 2 cut(s) 302, 683
RsaNI GTAC 2 cut(s) 301, 682
SacI GAGCTC 2 cut(s) 41, 213
SaqAI TTAA 3 cut(s) 161, 384, 760
SatI GCNGC 2 cut(s) 135, 464
Sau3AI GATC 5 cut(s) 113, 283, 288, 496, 733
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 41, 213
SfaNI GCATC 2 cut(s) 468, 505
SfcI CTRYAG 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 177
SgrAI CRCCGGYG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SphI GCATGC 1 cut(s) 527
Sse9I AATT 1 cut(s) 82
SsiI CCGC 3 cut(s) 21, 54, 134
SspMI CTAG 1 cut(s) 644
SstI GAGCTC 2 cut(s) 41, 213
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 3 cut(s) 297, 309, 687
TaqI TCGA 5 cut(s) 77, 89, 177, 392, 657
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 5 cut(s) 91, 263, 269, 389, 632
Tru1I TTAA 3 cut(s) 161, 384, 760
Tru9I TTAA 3 cut(s) 161, 384, 760
TseI GCWGC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 579
TspGWI ACGGA 1 cut(s) 63
Tth111I GACNNNGTC 1 cut(s) 353
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 368, 570
XspI CTAG 1 cut(s) 644
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.