Rmu_sc0001018.1_g000005

cytosolic

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001018.1
Physical Location & Seq
Reverse (-)
17717 .. 21128
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001018.1_g000005.1.cds

Sequence Viewer

Length: 1470 bp
atgcttctcaaggcctctccggcctccgcgtctcagttgctcactcgcggcgagagcttgttttcctcttctgctccattttcgtcttcttcgatttcctactccgccgctcctctgaactcgtccgcgtctctgttttcgagtctgcggtcatcgccggggagaaatgacggcggggccgtggtctgtgcggcctcgaagagttcgaacagccggccgcttaccggtgtggttttcgagccgtttgaggaggtgaagaaggagcttgatctcgtccctatgctccctcaaatctctctggctcgccagaagtacagtgaggacagtgaggctgccattaacgagcagatcaatgtggagtacaacgtatcctatgtgtaccatgccatgtatgcctacttcgacagggacaatgtcgcactcaggggtcttgccaagtttttcaaggaatcaagtgaggaggagagggagcatgctgagaaattgatggaataccagaataagcgtggtggaagagtgaaattgcaatcgatactgatgcctctttcagagttcgatcatgctgagaaaggagatgctctatacgcaatggagcttgcattgtctctggagaaactgacaaatgaaaagctgcttcacttacaccatgttgctgacaagaacaaagatgtgcaactagctgattttgttgaaagcgagtttttggctgagcaggtggaggcaatcaagaagatctcagaatatgttgctcaactcaggagggttggcaaaggacatgggacttggcacttcgatcagatgctgttacatgatgagtctgaagctgtcttttctgttggtggttctagtttactgttaagagatttagaccgtttggttaggacgccctgtgtggatgctttgccccggtcttcaactgtgttgcttcaacagctcaaagaagatgaacatccaaaaccgtggtcccatttgtgttacacaaaccgtgcaacattgttggttggttttatagttgcggcaacactcgccgttttgtactttaggaaggcaataatcctcacccagggtacctatcgggtattcgaccctaatgtggagaaattcggtggaattcgggtaacagggatggagatccctattattcaaattctgaaatcggggtcgtattccccgttgcagtgggttctgggagacggttcagtggattctgggctcaagttgttttggacttgggccggagatgcaatgggtggactggaacagcacgttttggacctccacaattttggatccaaatttgggatccaagtgggctttgcatatcatttcggatctgggatccgggtggacgatgggcttggactacaacccattatttttggtgggctgtttgctttttacgatggcatggggctcctgtgctttactggtattggatccaggaccctattctatggtatttgttcgtga

Protein Analysis

489

Amino Acids

54.04

Weight (kDa)

5.82

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 703
Acc36I ACCTGC 1 cut(s) 703
Acc65I GGTACC 1 cut(s) 1067
AccB1I GGYRCC 1 cut(s) 1067
AccBSI CCGCTC 1 cut(s) 110
AccII CGCG 3 cut(s) 29, 48, 128
AcoI YGGCCR 1 cut(s) 215
AcsI RAATTY 4 cut(s) 1100, 1110, 1146, 1295
AcuI CTGAAG 1 cut(s) 840
AcyI GRCGYC 1 cut(s) 884
AfaI GTAC 5 cut(s) 314, 362, 380, 1037, 1069
AfiI CCNNNNNNNGG 4 cut(s) 224, 1063, 1093, 1299
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 5 cut(s) 445, 692, 915, 929, 1145
AjnI CCWGG 2 cut(s) 1062, 1439
AluBI AGCT 7 cut(s) 57, 265, 595, 631, 680, 824, 934
AluI AGCT 7 cut(s) 57, 265, 595, 631, 680, 824, 934
Alw26I GTCTC 4 cut(s) 36, 135, 609, 1185
AlwNI CAGNNNCTG 1 cut(s) 802
AoxI GGCC 6 cut(s) 12, 21, 177, 192, 215, 1233
ApeKI GCWGC 2 cut(s) 332, 631
ApoI RAATTY 4 cut(s) 1100, 1110, 1146, 1295
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AsiGI ACCGGT 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 1067
AspS9I GGNCC 5 cut(s) 177, 963, 1233, 1273, 1443
AsuC2I CCSGG 3 cut(s) 159, 907, 1343
AsuHPI GGTGA 2 cut(s) 265, 1051
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 3 cut(s) 963, 1273, 1443
BamHI GGATCC 4 cut(s) 1289, 1302, 1338, 1436
BanI GGYRCC 1 cut(s) 1067
BanII GRGCYC 2 cut(s) 1215, 1416
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BbsI GAAGAC 2 cut(s) 78, 903
BbvI GCAGC 2 cut(s) 319, 618
BccI CCATC 4 cut(s) 481, 1120, 1346, 1397
BceAI ACGGC 4 cut(s) 164, 187, 226, 1013
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 2 cut(s) 1064, 1441
BciVI GTATCC 1 cut(s) 379
BcnI CCSGG 3 cut(s) 159, 907, 1343
BcoDI GTCTC 4 cut(s) 36, 135, 609, 1185
BfaI CTAG 2 cut(s) 677, 846
BfuAI ACCTGC 1 cut(s) 703
BfuI GTATCC 1 cut(s) 379
BglI GCCNNNNNGGC 1 cut(s) 20
BglII AGATCT 1 cut(s) 732
BisI GCNGC 7 cut(s) 49, 108, 192, 218, 333, 632, 1017
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 7 cut(s) 50, 109, 193, 219, 334, 633, 1018
Bme1390I CCNGG 5 cut(s) 159, 907, 1064, 1343, 1441
Bme18I GGWCC 3 cut(s) 963, 1273, 1443
BmgT120I GGNCC 5 cut(s) 177, 963, 1233, 1273, 1443
BmiI GGNNCC 9 cut(s) 178, 965, 1069, 1291, 1304, 1340, 1415, 1438, 1445
BmrFI CCNGG 5 cut(s) 159, 907, 1064, 1343, 1441
BmsI GCATC 5 cut(s) 528, 565, 789, 886, 1231
BpiI GAAGAC 2 cut(s) 78, 903
BpmI CTGGAG 1 cut(s) 629
Bpu1102I GCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 1199
BpuMI CCSGG 3 cut(s) 159, 907, 1343
Bsa29I ATCGAT 1 cut(s) 530
BsaBI GATNNNNATC 2 cut(s) 948, 1130
BsaHI GRCGYC 1 cut(s) 884
BsaJI CCNNGG 6 cut(s) 158, 180, 905, 959, 1062, 1063
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 1063, 1093, 1299
Bse118I RCCGGY 2 cut(s) 213, 224
Bse1I ACTGG 2 cut(s) 1260, 1432
Bse3DI GCAATG 2 cut(s) 594, 1251
Bse8I GATNNNNATC 2 cut(s) 948, 1130
BseBI CCWGG 2 cut(s) 1064, 1441
BseCI ATCGAT 1 cut(s) 530
BseDI CCNNGG 6 cut(s) 158, 180, 905, 959, 1062, 1063
BseGI GGATG 3 cut(s) 901, 949, 1131
BseJI GATNNNNATC 2 cut(s) 948, 1130
BseLI CCNNNNNNNGG 4 cut(s) 224, 1063, 1093, 1299
BseMI GCAATG 2 cut(s) 594, 1251
BseMII CTCAG 7 cut(s) 47, 436, 468, 555, 699, 750, 769
BseNI ACTGG 2 cut(s) 1260, 1432
BseRI GAGGAG 4 cut(s) 102, 263, 473, 476
BseX3I CGGCCG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 319, 618
Bsh1236I CGCG 3 cut(s) 29, 48, 128
Bsh1285I CGRYCG 1 cut(s) 218
BshFI GGCC 6 cut(s) 14, 23, 179, 194, 217, 1235
BshNI GGYRCC 1 cut(s) 1067
BshTI ACCGGT 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 218
BsiSI CCGG 7 cut(s) 20, 158, 214, 225, 907, 1236, 1342
BslFI GGGAC 4 cut(s) 260, 422, 793, 949
BslI CCNNNNNNNGG 4 cut(s) 224, 1063, 1093, 1299
BsmAI GTCTC 4 cut(s) 36, 135, 609, 1185
BsmBI CGTCTC 3 cut(s) 36, 135, 1185
BsmFI GGGAC 4 cut(s) 260, 422, 793, 949
BsnI GGCC 6 cut(s) 14, 23, 179, 194, 217, 1235
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 1215, 1416
Bsp1720I GCTNAGC 1 cut(s) 708
BspANI GGCC 6 cut(s) 14, 23, 179, 194, 217, 1235
BspCNI CTCAG 7 cut(s) 46, 435, 469, 556, 700, 749, 768
BspDI ATCGAT 1 cut(s) 530
BspFNI CGCG 3 cut(s) 29, 48, 128
BspLI GGNNCC 9 cut(s) 178, 965, 1069, 1291, 1304, 1340, 1415, 1438, 1445
BspMI ACCTGC 1 cut(s) 703
BspT104I TTCGAA 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 1067
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 594, 1251
BsrFI RCCGGY 2 cut(s) 213, 224
BsrI ACTGG 2 cut(s) 1260, 1432
BssAI RCCGGY 2 cut(s) 213, 224
BssECI CCNNGG 6 cut(s) 158, 180, 905, 959, 1062, 1063
BssNI GRCGYC 1 cut(s) 884
Bst2UI CCWGG 2 cut(s) 1064, 1441
Bst4CI ACNGT 8 cut(s) 317, 326, 855, 872, 919, 960, 986, 1196
Bst6I CTCTTC 3 cut(s) 73, 194, 508
BstACI GRCGYC 1 cut(s) 884
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 4 cut(s) 215, 304, 474, 597
BstDEI CTNAG 7 cut(s) 33, 422, 477, 564, 708, 736, 755
BstDSI CCRYGG 2 cut(s) 180, 959
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 3 cut(s) 901, 949, 1131
BstFNI CGCG 3 cut(s) 29, 48, 128
BstMAI GTCTC 4 cut(s) 36, 135, 609, 1185
BstMCI CGRYCG 1 cut(s) 218
BstMWI GCNNNNNNNGC 8 cut(s) 20, 54, 154, 392, 584, 931, 1025, 1241
BstNI CCWGG 2 cut(s) 1064, 1441
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 5 cut(s) 157, 905, 1062, 1341, 1439
BstUI CGCG 3 cut(s) 29, 48, 128
BstV1I GCAGC 2 cut(s) 319, 618
BstV2I GAAGAC 2 cut(s) 78, 903
BstX2I RGATCY 7 cut(s) 732, 1131, 1289, 1302, 1331, 1338, 1436
BstXI CCANNNNNNTGG 2 cut(s) 960, 1286
BstYI RGATCY 7 cut(s) 732, 1131, 1289, 1302, 1331, 1338, 1436
BstZI CGGCCG 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 530
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 6 cut(s) 14, 23, 179, 194, 217, 1235
BsuTUI ATCGAT 1 cut(s) 530
BtgI CCRYGG 2 cut(s) 180, 959
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 901, 949, 1131
BtsI GCAGTG 1 cut(s) 1184
BtsIMutI CAGTG 4 cut(s) 322, 331, 1184, 1206
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 4 cut(s) 215, 304, 474, 597
CaiI CAGNNNCTG 1 cut(s) 802
Cfr10I RCCGGY 2 cut(s) 213, 224
Cfr13I GGNCC 5 cut(s) 177, 963, 1233, 1273, 1443
ClaI ATCGAT 1 cut(s) 530
CseI GACGC 3 cut(s) 18, 117, 892
Csp6I GTAC 5 cut(s) 313, 361, 379, 1036, 1068
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 8 cut(s) 383, 388, 473, 560, 647, 776, 809, 1408
CviQI GTAC 5 cut(s) 313, 361, 379, 1036, 1068
DdeI CTNAG 7 cut(s) 33, 422, 477, 564, 708, 736, 755
EaeI YGGCCR 1 cut(s) 215
EagI CGGCCG 1 cut(s) 215
Eam1104I CTCTTC 3 cut(s) 73, 194, 508
EarI CTCTTC 3 cut(s) 73, 194, 508
EciI GGCGGA 1 cut(s) 94
EclXI CGGCCG 1 cut(s) 215
Eco147I AGGCCT 1 cut(s) 14
Eco24I GRGCYC 2 cut(s) 1215, 1416
Eco47I GGWCC 3 cut(s) 963, 1273, 1443
Eco52I CGGCCG 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 840
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoO109I RGGNCCY 1 cut(s) 1443
EcoRI GAATTC 1 cut(s) 1110
EcoRII CCWGG 2 cut(s) 1062, 1439
EcoT38I GRGCYC 2 cut(s) 1215, 1416
Esp3I CGTCTC 3 cut(s) 36, 135, 1185
FaeI CATG 8 cut(s) 386, 391, 476, 563, 650, 779, 812, 1411
FaqI GGGAC 4 cut(s) 260, 422, 793, 949
FatI CATG 8 cut(s) 382, 387, 472, 559, 646, 775, 808, 1407
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 7 cut(s) 49, 108, 192, 218, 333, 632, 1017
FokI GGATG 3 cut(s) 908, 936, 1138
FriOI GRGCYC 2 cut(s) 1215, 1416
Fsp4HI GCNGC 7 cut(s) 49, 108, 192, 218, 333, 632, 1017
FspBI CTAG 2 cut(s) 677, 846
GluI GCNGC 7 cut(s) 49, 108, 192, 218, 333, 632, 1017
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 6 cut(s) 14, 23, 179, 194, 217, 1235
HapII CCGG 7 cut(s) 20, 158, 214, 225, 907, 1236, 1342
HgaI GACGC 3 cut(s) 18, 117, 892
Hin1I GRCGYC 1 cut(s) 884
Hin1II CATG 8 cut(s) 386, 391, 476, 563, 650, 779, 812, 1411
HinfI GANTC 4 cut(s) 142, 449, 815, 1205
HpaII CCGG 7 cut(s) 20, 158, 214, 225, 907, 1236, 1342
HphI GGTGA 2 cut(s) 265, 1051
Hpy166II GTNNAC 4 cut(s) 379, 851, 1253, 1348
Hpy188I TCNGA 7 cut(s) 117, 550, 739, 798, 820, 1152, 1331
Hpy188III TCNNGA 4 cut(s) 608, 727, 757, 1467
Hpy8I GTNNAC 4 cut(s) 379, 851, 1253, 1348
HpyAV CCTTC 2 cut(s) 253, 1039
HpyCH4III ACNGT 8 cut(s) 317, 326, 855, 872, 919, 960, 986, 1196
HpyCH4IV ACGT 2 cut(s) 366, 1266
HpyCH4V TGCA 7 cut(s) 526, 599, 673, 989, 1177, 1244, 1319
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 54, 154, 392, 584, 931, 1025, 1241
HpyF3I CTNAG 7 cut(s) 33, 422, 477, 564, 708, 736, 755
HpySE526I ACGT 2 cut(s) 366, 1266
Hsp92I GRCGYC 1 cut(s) 884
Hsp92II CATG 8 cut(s) 386, 391, 476, 563, 650, 779, 812, 1411
KpnI GGTACC 1 cut(s) 1071
KroI GCCGGC 1 cut(s) 213
KroNI GCCGGC 1 cut(s) 215
LmnI GCTCC 7 cut(s) 79, 115, 262, 288, 469, 592, 1419
Lsp1109I GCAGC 2 cut(s) 319, 618
LweI GCATC 5 cut(s) 528, 565, 789, 886, 1231
MaeI CTAG 2 cut(s) 677, 846
MaeII ACGT 2 cut(s) 366, 1266
MaeIII GTNAC 3 cut(s) 804, 974, 1117
MbiI CCGCTC 1 cut(s) 110
MboII GAAGA 9 cut(s) 60, 78, 81, 211, 268, 525, 742, 903, 953
MflI RGATCY 7 cut(s) 732, 1131, 1289, 1302, 1331, 1338, 1436
MhlI GDGCHC 2 cut(s) 1215, 1416
MluCI AATT 7 cut(s) 482, 521, 1100, 1110, 1146, 1282, 1295
MlyI GAGTC 2 cut(s) 151, 824
MroNI GCCGGC 1 cut(s) 213
MseI TTAA 2 cut(s) 339, 857
MspI CCGG 7 cut(s) 20, 158, 214, 225, 907, 1236, 1342
MspR9I CCNGG 5 cut(s) 159, 907, 1064, 1343, 1441
MvaI CCWGG 2 cut(s) 1064, 1441
MvnI CGCG 3 cut(s) 29, 48, 128
MwoI GCNNNNNNNGC 8 cut(s) 20, 54, 154, 392, 584, 931, 1025, 1241
NaeI GCCGGC 1 cut(s) 215
NciI CCSGG 3 cut(s) 159, 907, 1343
NgoMIV GCCGGC 1 cut(s) 213
NlaIII CATG 8 cut(s) 386, 391, 476, 563, 650, 779, 812, 1411
NlaIV GGNNCC 9 cut(s) 178, 965, 1069, 1291, 1304, 1340, 1415, 1438, 1445
NspI RCATGY 1 cut(s) 476
NspV TTCGAA 1 cut(s) 206
PaeI GCATGC 1 cut(s) 476
PaqCI CACCTGC 1 cut(s) 703
PasI CCCWGGG 1 cut(s) 1063
PceI AGGCCT 1 cut(s) 14
PcsI WCGNNNNNNNCGW 4 cut(s) 89, 177, 203, 1169
PdiI GCCGGC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 449, 1205
PflFI GACNNNGTC 1 cut(s) 413
PfoI TCCNGGA 1 cut(s) 1439
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 7 cut(s) 50, 109, 193, 219, 334, 633, 1018
PleI GAGTC 2 cut(s) 150, 823
PpsI GAGTC 2 cut(s) 150, 823
PpuMI RGGWCCY 1 cut(s) 1443
Psp5II RGGWCCY 1 cut(s) 1443
Psp6I CCWGG 2 cut(s) 1062, 1439
PspGI CCWGG 2 cut(s) 1062, 1439
PspN4I GGNNCC 9 cut(s) 178, 965, 1069, 1291, 1304, 1340, 1415, 1438, 1445
PspPI GGNCC 5 cut(s) 177, 963, 1233, 1273, 1443
PspPPI RGGWCCY 1 cut(s) 1443
PstNI CAGNNNCTG 1 cut(s) 802
PsuI RGATCY 7 cut(s) 732, 1131, 1289, 1302, 1331, 1338, 1436
PsyI GACNNNGTC 1 cut(s) 413
RsaI GTAC 5 cut(s) 314, 362, 380, 1037, 1069
RsaNI GTAC 5 cut(s) 313, 361, 379, 1036, 1068
SaqAI TTAA 2 cut(s) 339, 857
SatI GCNGC 7 cut(s) 49, 108, 192, 218, 333, 632, 1017
Sau96I GGNCC 5 cut(s) 177, 963, 1233, 1273, 1443
SchI GAGTC 2 cut(s) 151, 824
ScrFI CCNGG 5 cut(s) 159, 907, 1064, 1343, 1441
SduI GDGCHC 2 cut(s) 1215, 1416
SfaNI GCATC 5 cut(s) 528, 565, 789, 886, 1231
SfiI GGCCNNNNNGGCC 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 3 cut(s) 963, 1273, 1443
SmlI CTYRAG 2 cut(s) 8, 1214
SmoI CTYRAG 2 cut(s) 8, 1214
SphI GCATGC 1 cut(s) 476
Sse9I AATT 7 cut(s) 482, 521, 1100, 1110, 1146, 1282, 1295
SseBI AGGCCT 1 cut(s) 14
SspMI CTAG 2 cut(s) 677, 846
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 5 cut(s) 157, 905, 1062, 1341, 1439
TaaI ACNGT 8 cut(s) 317, 326, 855, 872, 919, 960, 986, 1196
TaiI ACGT 2 cut(s) 369, 1269
TasI AATT 7 cut(s) 482, 521, 1100, 1110, 1146, 1282, 1295
TatI WGTACW 3 cut(s) 312, 360, 1035
TauI GCSGC 5 cut(s) 51, 110, 194, 220, 1019
TfiI GAWTC 2 cut(s) 449, 1205
Tru1I TTAA 2 cut(s) 339, 857
Tru9I TTAA 2 cut(s) 339, 857
TscAI CASTG 4 cut(s) 322, 331, 1184, 1206
TseI GCWGC 2 cut(s) 332, 631
TspDTI ATGAA 2 cut(s) 639, 960
TspRI CASTG 4 cut(s) 322, 331, 1184, 1206
Tth111I GACNNNGTC 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 963, 1273, 1443
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 4 cut(s) 1100, 1110, 1146, 1295
XceI RCATGY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XspI CTAG 2 cut(s) 677, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.