Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Reverse (-)

22560096 .. 22561256

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAATACCAGAATAAGCGTGGTGGAAGAGTGAAGTTGCAGTCAATTCTGATGCCTGTGTCGGAGTTCGATCATCCAGAGAAAGGAGATGCTTTATATGCAATGGAGCTTGCATTGTCACTCGAGAAACTGACAAATGAAAAGCTGCTCCACTTACACAGTGTTGCTGTGAAGAACAAAGATCCGCAGTTAACAGATTTTGTTGAAACCGAGTTTTTGGCTGAGCAGGTGGAAGCCATCAAGAAAATATCTGAATATGTTGCTCAAATAAGGAGAGTTGGCAAAGGACATGGGGTTTGGCACTTCGACCAGGCGCTGCTCCATGGGGATGCTGTAGCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

6.05

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	109, 145, 338
AluI	AGCT	3 cut(s)	109, 145, 338
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	145, 316, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspLEI	GCGC	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	132, 303, 325
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	3 cut(s)	146, 317, 339
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	3 cut(s)	147, 318, 340
Bme1390I	CCNGG	1 cut(s)	311
BmeT110I	CYCGRG	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	3 cut(s)	42, 79, 319
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	73, 334
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	132, 303, 325
BsiHKCI	CYCGRG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	70, 181
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	70, 181
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	73, 334
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	73, 184
BstMBI	GATC	2 cut(s)	70, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 338
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	132, 303, 325
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	73, 334
BtsIMutI	CAGTG	1 cut(s)	166
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	316
CviAII	CATG	2 cut(s)	290, 323
CviJI	RGCY	5 cut(s)	109, 145, 221, 236, 338
CviKI_1	RGCY	5 cut(s)	109, 145, 221, 236, 338
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	72, 183
DpnII	GATC	2 cut(s)	70, 181
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	2 cut(s)	293, 326
FaiI	YATR	5 cut(s)	97, 99, 258, 291, 324
FatI	CATG	2 cut(s)	289, 322
Fnu4HI	GCNGC	3 cut(s)	146, 317, 339
FokI	GGATG	2 cut(s)	60, 341
Fsp4HI	GCNGC	3 cut(s)	146, 317, 339
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	3 cut(s)	146, 317, 339
HaeII	RGCGCY	1 cut(s)	317
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	293, 326
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HpaI	GTTAAC	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	3 cut(s)	51, 64, 253
Hpy188III	TCNNGA	3 cut(s)	77, 124, 241
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	40, 101, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 338
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	293, 326
HspAI	GCGC	1 cut(s)	314
KspAI	GTTAAC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	70, 181
LmnI	GCTCC	3 cut(s)	106, 153, 324
LpnPI	CCDG	6 cut(s)	23, 69, 90, 212, 296, 323
Lsp1109I	GCAGC	3 cut(s)	132, 303, 325
LweI	GCATC	3 cut(s)	42, 79, 319
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	72, 183
MboI	GATC	2 cut(s)	70, 181
MboII	GAAGA	2 cut(s)	39, 184
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	98, 338
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	70, 181
NlaIII	CATG	2 cut(s)	293, 326
NmuCI	GTSAC	1 cut(s)	117
PaeR7I	CTCGAG	1 cut(s)	122
PaqCI	CACCTGC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	147, 318, 340
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	3 cut(s)	146, 317, 339
Sau3AI	GATC	2 cut(s)	70, 181
ScrFI	CCNGG	1 cut(s)	311
SetI	ASST	4 cut(s)	111, 147, 231, 340
SfaNI	GCATC	3 cut(s)	42, 79, 319
SfcI	CTRYAG	1 cut(s)	333
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	69, 123, 306
TasI	AATT	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	3 cut(s)	145, 316, 338
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XhoI	CTCGAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.