Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8375909.1

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Forward (+)

266 .. 992

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8375909.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggagcttgcattgtctctggagaaactgacaaatgaaaagctgcttcacttacaccatgttgctgacaagaacaaagatgtgcaactagctgattttgttgaaagcgagtttttggctgagcaggtggaggcaatcaagaagatctcagaatatgttgctcaactcaggagggttggcaaaggacatgggacttggcacttcgatcagatgctgttacatgatgaggttgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

79

Amino Acids

9.06

Weight (kDa)

5.59

Isoelectric Point (pI)

16.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	3 cut(s)	7, 43, 92
AluI	AGCT	3 cut(s)	7, 43, 92
Alw26I	GTCTC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	43, 233
BbvI	GCAGC	2 cut(s)	30, 220
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	115
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	2 cut(s)	44, 234
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	2 cut(s)	45, 235
BmsI	GCATC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	41
Bpu1102I	GCTNAGC	1 cut(s)	120
BseMII	CTCAG	3 cut(s)	111, 162, 181
BseXI	GCAGC	2 cut(s)	30, 220
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	144, 205
Bsp1720I	GCTNAGC	1 cut(s)	120
BspCNI	CTCAG	3 cut(s)	112, 161, 180
BspMI	ACCTGC	1 cut(s)	115
BssMI	GATC	2 cut(s)	144, 205
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	120, 148, 167
BstKTI	GATC	2 cut(s)	147, 208
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	144, 205
BstV1I	GCAGC	2 cut(s)	30, 220
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	214
CviAII	CATG	3 cut(s)	59, 188, 221
CviJI	RGCY	4 cut(s)	7, 43, 92, 119
CviKI_1	RGCY	4 cut(s)	7, 43, 92, 119
DdeI	CTNAG	3 cut(s)	120, 148, 167
DpnI	GATC	2 cut(s)	146, 207
DpnII	GATC	2 cut(s)	144, 205
FaeI	CATG	3 cut(s)	62, 191, 224
FaiI	YATR	5 cut(s)	60, 156, 189, 222, 238
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	58, 187, 220
Fnu4HI	GCNGC	2 cut(s)	44, 234
Fsp4HI	GCNGC	2 cut(s)	44, 234
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	44, 234
GsuI	CTGGAG	1 cut(s)	41
Hin1II	CATG	3 cut(s)	62, 191, 224
Hpy188I	TCNGA	2 cut(s)	151, 210
Hpy188III	TCNNGA	3 cut(s)	20, 139, 169
HpyCH4V	TGCA	3 cut(s)	11, 85, 236
HpyF3I	CTNAG	3 cut(s)	120, 148, 167
Hsp92II	CATG	3 cut(s)	62, 191, 224
Kzo9I	GATC	2 cut(s)	144, 205
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	5, 110, 154
Lsp1109I	GCAGC	2 cut(s)	30, 220
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	146, 207
MboI	GATC	2 cut(s)	144, 205
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	144
MnlI	CCTC	3 cut(s)	124, 165, 220
NdeII	GATC	2 cut(s)	144, 205
NlaIII	CATG	3 cut(s)	62, 191, 224
PaqCI	CACCTGC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	45, 235
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	144
SatI	GCNGC	2 cut(s)	44, 234
Sau3AI	GATC	2 cut(s)	144, 205
SetI	ASST	5 cut(s)	9, 45, 94, 129, 231
SfaNI	GCATC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	89
TaqI	TCGA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	43, 233
TspDTI	ATGAA	1 cut(s)	51
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.