Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Reverse (-)

26459712 .. 26462292

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1157700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTTCTCAAAGCCTCTGCAGCCTCCTCTCACTTGCTTGCTCGCGGGGACAGTTTTGGTCCTCTGTTTTCCTCTGGGCCGTCGTCGCCACCGCTGTCCATTTCGTACTCGTTCTCGCCTCTGAACTCCTCCACATCTCTGTCTTCGATTCTCCGGTTCCCTCCGGCGAAAAATGAAAGTGGGGTCGTCGTCTGCGCGTCGAAGAATGCGACTAACCGGCCGCTTACCGGTGTGGTTTTCGAGCCGTTTGAGGAGGTGAAGAAGGAGCTCGATCTCGTTCCTACTCTCCCCCAATTCTCTCTGGCCCGCCAGAAGTACACTGACGAAAGTGAGGCCGCCATTAACGAGCAGATCAATGTGGAGTACAACGTCTCGTACGTATACCATGCCTTGTACGCCTATTTCGATCGGGACAATGTTGCTCTCAAGGGTCTTGCCAATTTTTTCAAGGAATCGAGTGAGGAAGAAAGGGATCATGCTGAGAAATTTATGGAATACCAGAATAAGCGTGGTGGAAGAGTGAAATTGCAGTCTATTCTGATGCCTTTGTCTGAGTTTGATCATCCAGAGAAAGGAGATGCTTTGTATGCAATGGAGCTTGCATTATCTTTGGAGAAACTGACAAATGAAAAGCTGCTCCTTTTACACAGTGTTGCTGAGAAGAACAAAGATGTGCAGTTAACAGATTTTGTTGAAAGCGAGTATTTGACCGAGCAGGTGGAAGCCATCAAGAAAATCTCTGAATATGTTGCTCAACTAAGGAGAGTCGGAAAAGGACACGGGGTCTGGCACTTCGACCAGGCACTGCTCAACGGGGATGCTGTTGCAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

278

Amino Acids

30.84

Weight (kDa)

5.36

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	112 - 256	2.4e-32	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	2 cut(s)	45, 197
AciI	CCGC	5 cut(s)	45, 92, 221, 307, 336
AclWI	GGATC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	485
AfaI	GTAC	5 cut(s)	107, 317, 365, 377, 395
AfiI	CCNNNNNNNGG	2 cut(s)	227, 572
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	448, 695
AhdI	GACNNNNNGTC	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	798
AluBI	AGCT	3 cut(s)	268, 598, 634
AluI	AGCT	3 cut(s)	268, 598, 634
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	1 cut(s)	480
AlwNI	CAGNNNCTG	1 cut(s)	805
AoxI	GGCC	4 cut(s)	77, 218, 303, 333
ApeKI	GCWGC	3 cut(s)	20, 634, 827
ApoI	RAATTY	1 cut(s)	485
AsiGI	ACCGGT	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	59, 77, 304
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	32, 621
BccI	CCATC	1 cut(s)	734
BceAI	ACGGC	2 cut(s)	64, 229
BciT130I	CCWGG	1 cut(s)	800
BclI	TGATCA	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	5 cut(s)	21, 221, 336, 635, 828
BlsI	GCNGC	5 cut(s)	22, 222, 337, 636, 829
Bme1390I	CCNGG	1 cut(s)	800
Bme18I	GGWCC	1 cut(s)	59
BmeRI	GACNNNNNGTC	1 cut(s)	782
BmgT120I	GGNCC	3 cut(s)	59, 77, 304
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	800
BmsI	GCATC	3 cut(s)	531, 568, 808
BpiI	GAAGAC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	410
BsaAI	YACGTR	1 cut(s)	379
BsaWI	WCCGGW	2 cut(s)	153, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 572
Bse118I	RCCGGY	2 cut(s)	216, 227
Bse3DI	GCAATG	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	800
BseGI	GGATG	2 cut(s)	562, 823
BseLI	CCNNNNNNNGG	2 cut(s)	227, 572
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	3 cut(s)	471, 543, 648
BseRI	GAGGAG	3 cut(s)	16, 118, 266
BseX3I	CGGCCG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	32, 621
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	45, 197
Bsh1285I	CGRYCG	2 cut(s)	221, 409
BshFI	GGCC	4 cut(s)	79, 220, 305, 335
BshTI	ACCGGT	1 cut(s)	227
BsiEI	CGRYCG	2 cut(s)	221, 409
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	4 cut(s)	154, 164, 217, 228
BsiWI	CGTACG	1 cut(s)	375
BslFI	GGGAC	2 cut(s)	62, 425
BslI	CCNNNNNNNGG	2 cut(s)	227, 572
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	62, 425
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	4 cut(s)	79, 220, 305, 335
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	5 cut(s)	271, 351, 406, 472, 559
BspACI	CCGC	5 cut(s)	45, 92, 221, 307, 336
BspANI	GGCC	4 cut(s)	79, 220, 305, 335
BspCNI	CTCAG	3 cut(s)	472, 544, 649
BspFNI	CGCG	2 cut(s)	45, 197
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	2 cut(s)	216, 227
BssAI	RCCGGY	2 cut(s)	216, 227
BssMI	GATC	5 cut(s)	271, 351, 406, 472, 559
BssNAI	GTATAC	1 cut(s)	382
Bst1107I	GTATAC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	2 cut(s)	53, 650
Bst6I	CTCTTC	1 cut(s)	511
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	4 cut(s)	39, 43, 307, 600
BstDEI	CTNAG	4 cut(s)	480, 552, 657, 758
BstF5I	GGATG	2 cut(s)	562, 823
BstFNI	CGCG	2 cut(s)	45, 197
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	5 cut(s)	274, 354, 409, 475, 562
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	5 cut(s)	271, 351, 406, 472, 559
BstMCI	CGRYCG	2 cut(s)	221, 409
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 85, 395, 587, 827
BstNI	CCWGG	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	798
BstSFI	CTRYAG	1 cut(s)	18
BstSNI	TACGTA	1 cut(s)	379
BstUI	CGCG	2 cut(s)	45, 197
BstV1I	GCAGC	2 cut(s)	32, 621
BstV2I	GAAGAC	1 cut(s)	135
BstZ17I	GTATAC	1 cut(s)	382
BstZI	CGGCCG	1 cut(s)	218
BsuRI	GGCC	4 cut(s)	79, 220, 305, 335
BtsCI	GGATG	2 cut(s)	562, 823
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	3 cut(s)	318, 655, 803
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	4 cut(s)	39, 43, 307, 600
CaiI	CAGNNNCTG	1 cut(s)	805
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	2 cut(s)	216, 227
Cfr13I	GGNCC	3 cut(s)	59, 77, 304
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	5 cut(s)	106, 316, 364, 376, 394
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	2 cut(s)	386, 476
CviQI	GTAC	5 cut(s)	106, 316, 364, 376, 394
DdeI	CTNAG	4 cut(s)	480, 552, 657, 758
DpnI	GATC	5 cut(s)	273, 353, 408, 474, 561
DpnII	GATC	5 cut(s)	271, 351, 406, 472, 559
DriI	GACNNNNNGTC	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	218
EagI	CGGCCG	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	511
Eam1105I	GACNNNNNGTC	1 cut(s)	782
EarI	CTCTTC	1 cut(s)	511
Ecl136II	GAGCTC	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	218
Eco105I	TACGTA	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	59
Eco52I	CGGCCG	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	2 cut(s)	389, 479
FaiI	YATR	6 cut(s)	382, 387, 477, 491, 588, 747
FaqI	GGGAC	2 cut(s)	62, 425
FatI	CATG	2 cut(s)	385, 475
FauI	CCCGC	2 cut(s)	38, 314
FbaI	TGATCA	1 cut(s)	559
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	21, 221, 336, 635, 828
FokI	GGATG	2 cut(s)	549, 830
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	5 cut(s)	21, 221, 336, 635, 828
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	21, 221, 336, 635, 828
HaeIII	GGCC	4 cut(s)	79, 220, 305, 335
HapII	CCGG	4 cut(s)	154, 164, 217, 228
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	389, 479
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	3 cut(s)	148, 452, 765
HpaI	GTTAAC	1 cut(s)	681
HpaII	CCGG	4 cut(s)	154, 164, 217, 228
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	3 cut(s)	318, 382, 681
Hpy188I	TCNGA	5 cut(s)	123, 540, 553, 742, 770
Hpy188III	TCNNGA	3 cut(s)	410, 566, 730
Hpy8I	GTNNAC	3 cut(s)	318, 382, 681
Hpy99I	CGWCG	4 cut(s)	85, 88, 191, 202
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	53, 650
HpyCH4IV	ACGT	2 cut(s)	369, 378
HpyCH4V	TGCA	6 cut(s)	20, 529, 590, 602, 676, 827
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 85, 395, 587, 827
HpyF3I	CTNAG	4 cut(s)	480, 552, 657, 758
HpySE526I	ACGT	2 cut(s)	369, 378
Hsp92II	CATG	2 cut(s)	389, 479
HspAI	GCGC	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	681
Kzo9I	GATC	5 cut(s)	271, 351, 406, 472, 559
LmnI	GCTCC	3 cut(s)	265, 595, 642
Lsp1109I	GCAGC	2 cut(s)	32, 621
LweI	GCATC	3 cut(s)	531, 568, 808
MaeII	ACGT	2 cut(s)	369, 378
MalI	GATC	5 cut(s)	273, 353, 408, 474, 561
MboI	GATC	5 cut(s)	271, 351, 406, 472, 559
MboII	GAAGA	6 cut(s)	135, 214, 271, 476, 528, 673
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	4 cut(s)	293, 439, 485, 524
MlyI	GAGTC	1 cut(s)	774
MmeI	TCCRAC	1 cut(s)	748
MseI	TTAA	2 cut(s)	342, 680
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	4 cut(s)	154, 164, 217, 228
MspR9I	CCNGG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	800
MvnI	CGCG	2 cut(s)	45, 197
MwoI	GCNNNNNNNGC	5 cut(s)	20, 85, 395, 587, 827
NdeII	GATC	5 cut(s)	271, 351, 406, 472, 559
NlaIII	CATG	2 cut(s)	389, 479
NlaIV	GGNNCC	1 cut(s)	158
PaqCI	CACCTGC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	3 cut(s)	206, 375, 402
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	148, 452
Pfl23II	CGTACG	1 cut(s)	375
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	5 cut(s)	22, 222, 337, 636, 829
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
Ppu21I	YACGTR	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	798
PspGI	CCWGG	1 cut(s)	798
PspLI	CGTACG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	59, 77, 304
PstI	CTGCAG	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	805
PvuI	CGATCG	1 cut(s)	409
RsaI	GTAC	5 cut(s)	107, 317, 365, 377, 395
RsaNI	GTAC	5 cut(s)	106, 316, 364, 376, 394
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	342, 680
SatI	GCNGC	5 cut(s)	21, 221, 336, 635, 828
Sau3AI	GATC	5 cut(s)	271, 351, 406, 472, 559
Sau96I	GGNCC	3 cut(s)	59, 77, 304
SchI	GAGTC	1 cut(s)	774
ScrFI	CCNGG	1 cut(s)	800
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	7 cut(s)	258, 270, 372, 381, 600, 636, 720
SfaNI	GCATC	3 cut(s)	531, 568, 808
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SnaBI	TACGTA	1 cut(s)	379
Sse9I	AATT	4 cut(s)	293, 439, 485, 524
SsiI	CCGC	5 cut(s)	45, 92, 221, 307, 336
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	798
TaaI	ACNGT	2 cut(s)	53, 650
TaiI	ACGT	2 cut(s)	372, 381
TaqI	TCGA	7 cut(s)	146, 200, 240, 270, 405, 455, 795
TaqII	GACCGA	1 cut(s)	725
TasI	AATT	4 cut(s)	293, 439, 485, 524
TatI	WGTACW	2 cut(s)	315, 363
TauI	GCSGC	2 cut(s)	223, 338
TfiI	GAWTC	2 cut(s)	148, 452
Tru1I	TTAA	2 cut(s)	342, 680
Tru9I	TTAA	2 cut(s)	342, 680
TscAI	CASTG	3 cut(s)	325, 655, 810
TseI	GCWGC	3 cut(s)	20, 634, 827
TspDTI	ATGAA	2 cut(s)	189, 642
TspRI	CASTG	3 cut(s)	325, 655, 810
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.