Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026179.1

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Forward (+)

2200 .. 2556

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026179.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgcttctcaaggcctctccggcctccgcgtctcagttgctcactcgcggcgagagcttgttttcctcttctgctccattttcgtcttcttcgatttcctactccgccgctcctctgaactcgtccgcgtctctgttttcgagtctgcggtcatcgccggggagaaatgacggcggggccgtggtctgtgcggcctcgaagagttcgaacagccggccgcttaccggtgtggttttcgagccgtttgaggaggtgaagaaggagcttgatctcgtccctatgctccctcaaatctctctggctcgccagaagtacagtgaggacagtgaggctgccattaacgagcagatcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

118

Amino Acids

12.4

Weight (kDa)

6.24

Isoelectric Point (pI)

68.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	110
AccII	CGCG	3 cut(s)	29, 48, 128
AciI	CCGC	9 cut(s)	27, 48, 105, 108, 126, 148, 174, 191, 218
AcoI	YGGCCR	1 cut(s)	215
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	224
AluBI	AGCT	2 cut(s)	57, 265
AluI	AGCT	2 cut(s)	57, 265
Alw26I	GTCTC	2 cut(s)	36, 135
AoxI	GGCC	5 cut(s)	12, 21, 177, 192, 215
ApeKI	GCWGC	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	3 cut(s)	164, 187, 226
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	36, 135
BglI	GCCNNNNNGGC	1 cut(s)	20
BisI	GCNGC	5 cut(s)	49, 108, 192, 218, 333
BlsI	GCNGC	5 cut(s)	50, 109, 193, 219, 334
Bme1390I	CCNGG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	158, 180
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	2 cut(s)	213, 224
BseDI	CCNNGG	2 cut(s)	158, 180
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	2 cut(s)	102, 263
BseX3I	CGGCCG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	3 cut(s)	29, 48, 128
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	5 cut(s)	14, 23, 179, 194, 217
BshTI	ACCGGT	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	20, 158, 214, 225
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	36, 135
BsmBI	CGTCTC	2 cut(s)	36, 135
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	5 cut(s)	14, 23, 179, 194, 217
Bsp119I	TTCGAA	1 cut(s)	206
Bsp143I	GATC	2 cut(s)	268, 348
BspACI	CCGC	9 cut(s)	27, 48, 105, 108, 126, 148, 174, 191, 218
BspANI	GGCC	5 cut(s)	14, 23, 179, 194, 217
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	3 cut(s)	29, 48, 128
BspLI	GGNNCC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	213, 224
BssAI	RCCGGY	2 cut(s)	213, 224
BssECI	CCNNGG	2 cut(s)	158, 180
BssMI	GATC	2 cut(s)	268, 348
Bst4CI	ACNGT	2 cut(s)	317, 326
Bst6I	CTCTTC	2 cut(s)	73, 194
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	215, 304
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	3 cut(s)	29, 48, 128
BstKTI	GATC	2 cut(s)	271, 351
BstMAI	GTCTC	2 cut(s)	36, 135
BstMBI	GATC	2 cut(s)	268, 348
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 54, 154
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	3 cut(s)	29, 48, 128
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	215
BsuRI	GGCC	5 cut(s)	14, 23, 179, 194, 217
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	322, 331
Cac8I	GCNNGC	2 cut(s)	215, 304
Cfr10I	RCCGGY	2 cut(s)	213, 224
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	2 cut(s)	18, 117
Csp6I	GTAC	1 cut(s)	313
CspAI	ACCGGT	1 cut(s)	224
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	270, 350
DpnII	GATC	2 cut(s)	268, 348
EaeI	YGGCCR	1 cut(s)	215
EagI	CGGCCG	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	73, 194
EarI	CTCTTC	2 cut(s)	73, 194
EciI	GGCGGA	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	215
Esp3I	CGTCTC	2 cut(s)	36, 135
FaiI	YATR	1 cut(s)	281
FaqI	GGGAC	1 cut(s)	260
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	5 cut(s)	49, 108, 192, 218, 333
Fsp4HI	GCNGC	5 cut(s)	49, 108, 192, 218, 333
GluI	GCNGC	5 cut(s)	49, 108, 192, 218, 333
HaeIII	GGCC	5 cut(s)	14, 23, 179, 194, 217
HapII	CCGG	4 cut(s)	20, 158, 214, 225
HgaI	GACGC	2 cut(s)	18, 117
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	4 cut(s)	20, 158, 214, 225
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	317, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 54, 154
HpyF3I	CTNAG	1 cut(s)	33
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	268, 348
LmnI	GCTCC	4 cut(s)	79, 115, 262, 288
LpnPI	CCDG	6 cut(s)	33, 171, 227, 238, 284, 320
Lsp1109I	GCAGC	1 cut(s)	319
MalI	GATC	2 cut(s)	270, 350
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	2 cut(s)	268, 348
MboII	GAAGA	5 cut(s)	60, 78, 81, 211, 268
MlyI	GAGTC	1 cut(s)	151
MroNI	GCCGGC	1 cut(s)	213
MseI	TTAA	1 cut(s)	339
MspI	CCGG	4 cut(s)	20, 158, 214, 225
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	3 cut(s)	29, 48, 128
MwoI	GCNNNNNNNGC	3 cut(s)	20, 54, 154
NaeI	GCCGGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	268, 348
NgoMIV	GCCGGC	1 cut(s)	213
NlaIV	GGNNCC	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	3 cut(s)	89, 177, 203
PdiI	GCCGGC	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	50, 109, 193, 219, 334
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	177
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	5 cut(s)	49, 108, 192, 218, 333
Sau3AI	GATC	2 cut(s)	268, 348
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	3 cut(s)	59, 255, 267
SfiI	GGCCNNNNNGGCC	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	14
SsiI	CCGC	9 cut(s)	27, 48, 105, 108, 126, 148, 174, 191, 218
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	317, 326
TaqI	TCGA	5 cut(s)	92, 140, 197, 206, 237
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	4 cut(s)	51, 110, 194, 220
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	322, 331
TseI	GCWGC	1 cut(s)	332
TspRI	CASTG	2 cut(s)	322, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.