Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Reverse (-)

19215242 .. 19217868

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTTCTCAAAGCTTCTCCGGTGGCCTCGTCTCAGTTGCTCACTCGCGGCGAGAGCCTGCTGGCTCATCCGTTCACCTCTCCTCCTCCATCGTCGTTTCCCTCCTCGGTTTCCTACTCCGCCGCTCCTCTGAACTCGTCGACGTCTCTGTTTTTGAGTCTCCGGTCGTCTCCGGCGGTATGCGCGGCGTCGAAGAGTTCGAACAGCCGTCCGTTGACCGGTGTGTTATTCGAGCCGTTTGAGGAGGTGAAGAAGGAGCTTGATCTCGTTCCTACTCTCCCTCAGGTCTCTCTGGCTCGCCAGAAGTACAGCGAGGATAGTGAGGCCGCTGTTAATGAACAGATCAATGTGGAGTACAATGTGTCGTATGTCTACCATGCCATGTATGCCTACTTCGACAGGGACAATGTCGCACTCAGGGGACTTGCCAAGTTTTTCAAGGAATCAAGTGAGGAAGAGAGGGGTCATGCTGAGAAATTGATGGAGTACCAGAATAAGCGTGGTGGAAGAGTGAAATTGCAATCAATACTGATGCCTGTCTCTGAGTTTGATCATGCTGAGAAAGGAGATGCTTTATATGCAATGGAGCTTGCATTGTCTCTGGAAAAACTGACAAATGAAAAGCTGCTCAACTTGCAGCATGTCGCTGACAAGAACAAAGATGTGCAACTAACTGATTTTGTTGAAAGCGAGTTTTTGGCTGAGCAGGTGGAGGCAATCAAGAAGATCTCAGAATATGTTGCTCAACTCAGGAGGGTTGGCAAAGGACATGGGGTTTGGCACTTCGATCAGATGCTGCTACATGATGAGGTTGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

274

Amino Acids

30.44

Weight (kDa)

5.56

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	109 - 253	4.4e-33	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
AatII	GACGTC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	125
AccI	GTMKAC	2 cut(s)	140, 372
AccII	CGCG	2 cut(s)	48, 185
AciI	CCGC	6 cut(s)	48, 120, 123, 176, 185, 327
AcyI	GRCGYC	2 cut(s)	143, 188
AfaI	GTAC	3 cut(s)	308, 356, 488
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgeI	ACCGGT	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	439, 686
AluBI	AGCT	4 cut(s)	14, 259, 589, 625
AluI	AGCT	4 cut(s)	14, 259, 589, 625
Alw26I	GTCTC	7 cut(s)	36, 150, 164, 174, 292, 544, 603
AlwNI	CAGNNNCTG	1 cut(s)	796
AoxI	GGCC	2 cut(s)	24, 324
ApeKI	GCWGC	4 cut(s)	625, 637, 796, 815
ArsI	GACNNNNNNTTYG	2 cut(s)	759, 791
AsiGI	ACCGGT	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	67, 259
AsuII	TTCGAA	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
BbvI	GCAGC	4 cut(s)	612, 649, 783, 802
BccI	CCATC	2 cut(s)	97, 475
BceAI	ACGGC	2 cut(s)	192, 220
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	7 cut(s)	36, 150, 164, 174, 292, 544, 603
BfuAI	ACCTGC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	726
BisI	GCNGC	8 cut(s)	49, 123, 186, 327, 626, 638, 797, 816
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	8 cut(s)	50, 124, 187, 328, 627, 639, 798, 817
BmsI	GCATC	3 cut(s)	522, 559, 783
Bpu1102I	GCTNAGC	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	200
BsaHI	GRCGYC	2 cut(s)	143, 188
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	3 cut(s)	19, 162, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse118I	RCCGGY	1 cut(s)	218
Bse21I	CCTNAGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	9 cut(s)	47, 296, 430, 462, 534, 549, 693, 744, 763
BseRI	GAGGAG	5 cut(s)	72, 75, 94, 117, 257
BseXI	GCAGC	4 cut(s)	612, 649, 783, 802
Bsh1236I	CGCG	2 cut(s)	48, 185
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	26, 326
BshTI	ACCGGT	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	167
BsiSI	CCGG	4 cut(s)	20, 163, 173, 219
BslFI	GGGAC	2 cut(s)	416, 435
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	7 cut(s)	36, 150, 164, 174, 292, 544, 603
BsmBI	CGTCTC	3 cut(s)	36, 150, 174
BsmFI	GGGAC	2 cut(s)	416, 435
BsnI	GGCC	2 cut(s)	26, 326
Bso31I	GGTCTC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	200
Bsp143I	GATC	5 cut(s)	262, 342, 550, 726, 787
Bsp1720I	GCTNAGC	1 cut(s)	702
BspACI	CCGC	6 cut(s)	48, 120, 123, 176, 185, 327
BspANI	GGCC	2 cut(s)	26, 326
BspCNI	CTCAG	9 cut(s)	46, 295, 429, 463, 535, 550, 694, 743, 762
BspFNI	CGCG	2 cut(s)	48, 185
BspMI	ACCTGC	1 cut(s)	697
BspT104I	TTCGAA	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	5 cut(s)	262, 342, 550, 726, 787
BssNI	GRCGYC	2 cut(s)	143, 188
Bst6I	CTCTTC	3 cut(s)	188, 450, 502
BstACI	GRCGYC	2 cut(s)	143, 188
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	4 cut(s)	59, 63, 298, 591
BstDEI	CTNAG	9 cut(s)	33, 282, 416, 471, 543, 558, 702, 730, 749
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	48, 185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	265, 345, 553, 729, 790
BstMAI	GTCTC	7 cut(s)	36, 150, 164, 174, 292, 544, 603
BstMBI	GATC	5 cut(s)	262, 342, 550, 726, 787
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 182, 386, 578, 634
BstNSI	RCATGY	1 cut(s)	644
BstUI	CGCG	2 cut(s)	48, 185
BstV1I	GCAGC	4 cut(s)	612, 649, 783, 802
BstX2I	RGATCY	1 cut(s)	726
BstYI	RGATCY	1 cut(s)	726
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	26, 326
BtsCI	GGATG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	4 cut(s)	59, 63, 298, 591
CaiI	CAGNNNCTG	1 cut(s)	796
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	218
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	307, 355, 487
CspAI	ACCGGT	1 cut(s)	218
CviAII	CATG	7 cut(s)	377, 382, 467, 554, 641, 770, 803
CviQI	GTAC	3 cut(s)	307, 355, 487
DdeI	CTNAG	9 cut(s)	33, 282, 416, 471, 543, 558, 702, 730, 749
DpnI	GATC	5 cut(s)	264, 344, 552, 728, 789
DpnII	GATC	5 cut(s)	262, 342, 550, 726, 787
Eam1104I	CTCTTC	3 cut(s)	188, 450, 502
EarI	CTCTTC	3 cut(s)	188, 450, 502
EciI	GGCGGA	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	282
Esp3I	CGTCTC	3 cut(s)	36, 150, 174
FaeI	CATG	7 cut(s)	380, 385, 470, 557, 644, 773, 806
FaqI	GGGAC	2 cut(s)	416, 435
FatI	CATG	7 cut(s)	376, 381, 466, 553, 640, 769, 802
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	2 cut(s)	140, 372
Fnu4HI	GCNGC	8 cut(s)	49, 123, 186, 327, 626, 638, 797, 816
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	8 cut(s)	49, 123, 186, 327, 626, 638, 797, 816
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	8 cut(s)	49, 123, 186, 327, 626, 638, 797, 816
HaeIII	GGCC	2 cut(s)	26, 326
HapII	CCGG	4 cut(s)	20, 163, 173, 219
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	143, 188
Hin1II	CATG	7 cut(s)	380, 385, 470, 557, 644, 773, 806
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	2 cut(s)	141, 216
HindII	GTYRAC	2 cut(s)	141, 216
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	157, 443
HpaII	CCGG	4 cut(s)	20, 163, 173, 219
HphI	GGTGA	2 cut(s)	67, 259
Hpy166II	GTNNAC	4 cut(s)	75, 141, 216, 373
Hpy188I	TCNGA	4 cut(s)	132, 544, 733, 792
Hpy188III	TCNNGA	3 cut(s)	602, 721, 751
Hpy8I	GTNNAC	4 cut(s)	75, 141, 216, 373
Hpy99I	CGWCG	4 cut(s)	97, 142, 145, 193
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	5 cut(s)	520, 581, 593, 637, 667
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 182, 386, 578, 634
HpyF3I	CTNAG	9 cut(s)	33, 282, 416, 471, 543, 558, 702, 730, 749
HpySE526I	ACGT	1 cut(s)	143
Hsp92I	GRCGYC	2 cut(s)	143, 188
Hsp92II	CATG	7 cut(s)	380, 385, 470, 557, 644, 773, 806
HspAI	GCGC	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	5 cut(s)	262, 342, 550, 726, 787
LmnI	GCTCC	3 cut(s)	130, 256, 586
Lsp1109I	GCAGC	4 cut(s)	612, 649, 783, 802
LweI	GCATC	3 cut(s)	522, 559, 783
MaeII	ACGT	1 cut(s)	143
MalI	GATC	5 cut(s)	264, 344, 552, 728, 789
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	262, 342, 550, 726, 787
MboII	GAAGA	5 cut(s)	205, 262, 467, 519, 736
MflI	RGATCY	1 cut(s)	726
MluCI	AATT	2 cut(s)	476, 515
MlyI	GAGTC	1 cut(s)	166
MseI	TTAA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	4 cut(s)	20, 163, 173, 219
MvnI	CGCG	2 cut(s)	48, 185
MwoI	GCNNNNNNNGC	5 cut(s)	54, 182, 386, 578, 634
NdeII	GATC	5 cut(s)	262, 342, 550, 726, 787
NlaIII	CATG	7 cut(s)	380, 385, 470, 557, 644, 773, 806
NspI	RCATGY	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	200
PaqCI	CACCTGC	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	443
PflFI	GACNNNGTC	1 cut(s)	407
PinAI	ACCGGT	1 cut(s)	218
PkrI	GCNGC	8 cut(s)	50, 124, 187, 328, 627, 639, 798, 817
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	726
PsyI	GACNNNGTC	1 cut(s)	407
RsaI	GTAC	3 cut(s)	308, 356, 488
RsaNI	GTAC	3 cut(s)	307, 355, 487
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	8 cut(s)	49, 123, 186, 327, 626, 638, 797, 816
Sau3AI	GATC	5 cut(s)	262, 342, 550, 726, 787
SchI	GAGTC	1 cut(s)	166
SfaNI	GCATC	3 cut(s)	522, 559, 783
SfuI	TTCGAA	1 cut(s)	200
SgrDI	CGTCGACG	1 cut(s)	139
Sse9I	AATT	2 cut(s)	476, 515
SsiI	CCGC	6 cut(s)	48, 120, 123, 176, 185, 327
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	6 cut(s)	140, 191, 200, 231, 396, 786
TasI	AATT	2 cut(s)	476, 515
TatI	WGTACW	2 cut(s)	306, 354
TauI	GCSGC	4 cut(s)	51, 125, 188, 329
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	4 cut(s)	625, 637, 796, 815
TspDTI	ATGAA	2 cut(s)	351, 633
TspGWI	ACGGA	2 cut(s)	60, 201
Tth111I	GACNNNGTC	1 cut(s)	407
XceI	RCATGY	1 cut(s)	644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmiI	GTMKAC	2 cut(s)	140, 372
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.