AT3G56090

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008237
Physical Location & Seq
Reverse (-)
20813904 .. 20816035
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56090.1

Sequence Viewer

Length: 780 bp
ATGCTTCTCAAAGCTGCTTCTACTTTCTCTCTATTGAACATTCATGGAGAGAAGAAAGACATCTCTCCTCTCTTCTCCTCCTCCTCCTCCATTTCGTCTCCGGTTTCTTCTGGAAAATCCGGCAATCTCTCTTTCCCTCTTCGTGCTTCCAAGAGTTCAACCACTACCACAAGCACGTTGAGCGGCGTTGTGTTCGAGCCTTTCGAAGAGGTTAAGAAAGAGATGGATCTAGTTCCATCTGGTCAACAGCTTTCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCCGCCGTCAATGAGCAGATCAATGTTGAGTATAACGTGTCGTATGTGTATCACGCTTTGTATGCATATTTCGATCGTGACAACGTTGCCCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCGAGTGTGGAAGAACGAGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACGTGGTGGGAGGGTCAAGTTACAGCCCATGGTGTTGCCTCAGTCTGAGTTTGATCATCCTGAGAAAGGAGATGCTCTCTATGCTATGGAGTTGGCTCTTTCATTGGAGAAACTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCTTCCAAGAACGATGATGTCCAGTTGGCAGATTTTATTGAGAGTGTGTTTCTGAACGAACAGGTGGAAGCCATTAAGAAAATCTCAGAATATGTTTCTCAACTTAGGAGACTTGGCAAAGGACATGGAACATGGCATTTCGATCAGGAGCTTCTTGGTGCTGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097305 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

259

Amino Acids

28.84

Weight (kDa)

5.54

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 97 - 240 1.2e-32 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 606
AccBSI CCGCTC 1 cut(s) 183
AciI CCGC 2 cut(s) 183, 291
AclI AACGTT 1 cut(s) 372
AclWI GGATC 1 cut(s) 234
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 3 cut(s) 37, 159, 403
AhlI ACTAGT 1 cut(s) 574
AluBI AGCT 5 cut(s) 14, 250, 439, 589, 760
AluI AGCT 5 cut(s) 14, 250, 439, 589, 760
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 3 cut(s) 102, 392, 712
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 14, 770, 773
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AsuII TTCGAA 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 432
BbvI GCAGC 2 cut(s) 757, 760
BccI CCATC 3 cut(s) 217, 244, 439
BceAI ACGGC 1 cut(s) 278
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 3 cut(s) 102, 392, 712
BcuI ACTAGT 1 cut(s) 574
BfaI CTAG 2 cut(s) 230, 575
BfuAI ACCTGC 1 cut(s) 606
BisI GCNGC 5 cut(s) 15, 184, 291, 771, 774
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 5 cut(s) 16, 185, 292, 772, 775
BmsI GCATC 1 cut(s) 523
BplI GAGNNNNNCTC 2 cut(s) 522, 554
Bpu1102I GCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 1 cut(s) 631
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 6 cut(s) 270, 426, 498, 513, 515, 708
BseNI ACTGG 1 cut(s) 631
BseRI GAGGAG 5 cut(s) 57, 67, 70, 73, 76
BseXI GCAGC 2 cut(s) 757, 760
BsgI GTGCAG 1 cut(s) 584
Bsh1285I CGRYCG 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 2 cut(s) 101, 120
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 3 cut(s) 102, 392, 712
BsmBI CGTCTC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 5 cut(s) 226, 306, 361, 514, 751
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 2 cut(s) 183, 291
BspCNI CTCAG 6 cut(s) 271, 427, 499, 514, 514, 707
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 5 cut(s) 226, 306, 361, 514, 751
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 3 cut(s) 77, 144, 201
BstBI TTCGAA 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 7 cut(s) 279, 435, 501, 507, 522, 694, 713
BstDSI CCRYGG 1 cut(s) 489
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 517
BstKTI GATC 5 cut(s) 229, 309, 364, 517, 754
BstMAI GTCTC 3 cut(s) 102, 392, 712
BstMBI GATC 5 cut(s) 226, 306, 361, 514, 751
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 180, 350, 436, 542
BstV1I GCAGC 2 cut(s) 757, 760
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 610
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 4 cut(s) 44, 490, 734, 741
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 7 cut(s) 279, 435, 501, 507, 522, 694, 713
DpnI GATC 5 cut(s) 228, 308, 363, 516, 753
DpnII GATC 5 cut(s) 226, 306, 361, 514, 751
DraIII CACNNNGTG 1 cut(s) 607
Eam1104I CTCTTC 3 cut(s) 77, 144, 201
EarI CTCTTC 3 cut(s) 77, 144, 201
Eco130I CCWWGG 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 4 cut(s) 47, 493, 737, 744
FatI CATG 4 cut(s) 43, 489, 733, 740
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 5 cut(s) 15, 184, 291, 771, 774
FokI GGATG 1 cut(s) 504
Fsp4HI GCNGC 5 cut(s) 15, 184, 291, 771, 774
FspBI CTAG 2 cut(s) 230, 575
GluI GCNGC 5 cut(s) 15, 184, 291, 771, 774
HapII CCGG 2 cut(s) 101, 120
Hin1II CATG 4 cut(s) 47, 493, 737, 744
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HinfI GANTC 1 cut(s) 407
HpaII CCGG 2 cut(s) 101, 120
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 4 cut(s) 456, 508, 663, 697
Hpy188III TCNNGA 4 cut(s) 111, 365, 521, 755
Hpy8I GTNNAC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 4 cut(s) 176, 324, 372, 463
HpyCH4V TGCA 2 cut(s) 353, 601
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 350, 436, 542
HpyF3I CTNAG 7 cut(s) 279, 435, 501, 507, 522, 694, 713
HpySE526I ACGT 4 cut(s) 176, 324, 372, 463
Hsp92II CATG 4 cut(s) 47, 493, 737, 744
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 5 cut(s) 226, 306, 361, 514, 751
LmnI GCTCC 2 cut(s) 594, 757
Lsp1109I GCAGC 2 cut(s) 757, 760
LweI GCATC 1 cut(s) 523
MaeI CTAG 2 cut(s) 230, 575
MaeII ACGT 4 cut(s) 176, 324, 372, 463
MaeIII GTNAC 2 cut(s) 365, 480
MalI GATC 5 cut(s) 228, 308, 363, 516, 753
MbiI CCGCTC 1 cut(s) 183
MboI GATC 5 cut(s) 226, 306, 361, 514, 751
MboII GAAGA 6 cut(s) 64, 64, 99, 131, 218, 431
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 432
Mph1103I ATGCAT 1 cut(s) 355
MseI TTAA 3 cut(s) 213, 684, 778
MspI CCGG 2 cut(s) 101, 120
MwoI GCNNNNNNNGC 4 cut(s) 180, 350, 436, 542
NcoI CCATGG 1 cut(s) 489
NdeII GATC 5 cut(s) 226, 306, 361, 514, 751
NlaIII CATG 4 cut(s) 47, 493, 737, 744
NmuCI GTSAC 1 cut(s) 365
NsiI ATGCAT 1 cut(s) 355
NspV TTCGAA 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 5 cut(s) 16, 185, 292, 772, 775
Ple19I CGATCG 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 372
PsuI RGATCY 1 cut(s) 226
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 213, 684, 778
SatI GCNGC 5 cut(s) 15, 184, 291, 771, 774
Sau3AI GATC 5 cut(s) 226, 306, 361, 514, 751
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 523
SfuI TTCGAA 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 574
SsiI CCGC 2 cut(s) 183, 291
SspMI CTAG 2 cut(s) 230, 575
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 4 cut(s) 179, 327, 375, 466
TaqI TCGA 5 cut(s) 195, 204, 360, 410, 750
TatI WGTACW 1 cut(s) 270
TauI GCSGC 2 cut(s) 186, 293
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 3 cut(s) 213, 684, 778
Tru9I TTAA 3 cut(s) 213, 684, 778
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 3 cut(s) 14, 770, 773
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 32, 552, 597
TspRI CASTG 1 cut(s) 610
XagI CCTNNNNNAGG 1 cut(s) 525
XspI CTAG 2 cut(s) 230, 575
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.