Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Forward (+)

15001298 .. 15001654

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1149100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCCTCGATTCTTCGGTTCTCTGCGGTGAGAAATGAAAGTTGGGTCATCATCTGCGCTTCGAAGAACGCGAATAATCAGCCATTTACCGGTGTGGTTTTCGAGCCATTTGAGGAGGTGAACAAGGAGCTTGACCTCGTCCCTACTCACCCACAAGTCTCTTTCGCCCGCCAGAAGTTCACTGATGAAAGCGAGGCCACCATTAACGAACATATCAATGTGGAGTACAATGTCTTGTACATTTACCATGCCATGTTCGCCTATTTCGACAGGGACAATGTAGCGCGCAAGAGTTTTTCAAGGAATCGAGTGAGGAAGAAAGGATCATGCCAAGAAATTAATGGAATACCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0097577 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

119

Amino Acids

13.68

Weight (kDa)

6.3

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	71, 286
AciI	CCGC	2 cut(s)	26, 169
AclWI	GGATC	1 cut(s)	331
AfaI	GTAC	2 cut(s)	227, 239
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	339
AsiGI	ACCGGT	1 cut(s)	89
AspLEI	GCGC	3 cut(s)	59, 286, 288
AsuHPI	GGTGA	3 cut(s)	40, 130, 140
AsuII	TTCGAA	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	89
BsePI	GCGCGC	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	71, 286
BshFI	GGCC	1 cut(s)	197
BshTI	ACCGGT	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	125, 287
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	125, 287
BsnI	GGCC	1 cut(s)	197
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	323
BspACI	CCGC	2 cut(s)	26, 169
BspANI	GGCC	1 cut(s)	197
BspFNI	CGCG	2 cut(s)	71, 286
BspPI	GGATC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	89
BssHII	GCGCGC	1 cut(s)	284
BssMI	GATC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	169, 286
BstFNI	CGCG	2 cut(s)	71, 286
BstHHI	GCGC	3 cut(s)	59, 286, 288
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	323
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstUI	CGCG	2 cut(s)	71, 286
BsuRI	GGCC	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	169, 286
CfoI	GCGC	3 cut(s)	59, 286, 288
Cfr10I	RCCGGY	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	226, 238
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	3 cut(s)	248, 253, 327
CviJI	RGCY	4 cut(s)	82, 106, 130, 197
CviKI_1	RGCY	4 cut(s)	82, 106, 130, 197
CviQI	GTAC	2 cut(s)	226, 238
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
FaeI	CATG	3 cut(s)	251, 256, 330
FaiI	YATR	4 cut(s)	213, 249, 254, 328
FaqI	GGGAC	2 cut(s)	125, 287
FatI	CATG	3 cut(s)	247, 252, 326
FauI	CCCGC	1 cut(s)	176
GlaI	GCGC	3 cut(s)	58, 285, 287
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	3 cut(s)	59, 286, 288
Hin1II	CATG	3 cut(s)	251, 256, 330
Hin6I	GCGC	3 cut(s)	57, 284, 286
HinP1I	GCGC	3 cut(s)	57, 284, 286
HinfI	GANTC	2 cut(s)	10, 304
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	3 cut(s)	40, 130, 140
Hpy166II	GTNNAC	2 cut(s)	121, 180
Hpy8I	GTNNAC	2 cut(s)	121, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	3 cut(s)	251, 256, 330
HspAI	GCGC	3 cut(s)	57, 284, 286
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	103, 185, 256
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MboII	GAAGA	3 cut(s)	5, 76, 328
MluCI	AATT	1 cut(s)	336
MnlI	CCTC	6 cut(s)	16, 106, 109, 146, 187, 306
MseI	TTAA	2 cut(s)	204, 339
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	2 cut(s)	71, 286
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	251, 256, 330
NspV	TTCGAA	1 cut(s)	62
PauI	GCGCGC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 264
PfeI	GAWTC	2 cut(s)	10, 304
PflFI	GACNNNGTC	1 cut(s)	137
PinAI	ACCGGT	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	339
PsyI	GACNNNGTC	1 cut(s)	137
PteI	GCGCGC	1 cut(s)	284
RsaI	GTAC	2 cut(s)	227, 239
RsaNI	GTAC	2 cut(s)	226, 238
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	204, 339
Sau3AI	GATC	1 cut(s)	323
SetI	ASST	3 cut(s)	120, 132, 138
SfuI	TTCGAA	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	26, 169
TaqI	TCGA	5 cut(s)	8, 62, 102, 267, 307
TasI	AATT	1 cut(s)	336
TatI	WGTACW	2 cut(s)	225, 237
TfiI	GAWTC	2 cut(s)	10, 304
Tru1I	TTAA	2 cut(s)	204, 339
Tru9I	TTAA	2 cut(s)	204, 339
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	51, 201
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.