Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Reverse (-)

16716007 .. 16717369

Gene Structure 1363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17440.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTACGCCTATTTCGATCGGGACAATGTTGCTCTCAAGGGTCTTGCCAATTTTTTCAAGGAATCGAGTGAGGAAGAAAGGGATCATGCTGAGAAATTTATGGAATACCAGAATAAGCGTGGTGGAAGAGTGAAATTGCAGTCTATTCTGATGCCTGTGTCTGAGTTCGATCATCCAGAGAAAGGAGATGCTTTGTATGCAATGGAGCTTGCATTGTCTCTGGAGAAACTGACAAATGAAAAGCTGCTCCACTTACACAGTGTTGCTGAGAAGAACAAAGATGTGCAGTTAACAGATTTTGTTGAAAGCGAGTATTTGACCGAGCAGGTGGAAGCCATCAAGAAAATCTCTGAATATGTTGCTCAACTAAGGAGAGTCGGAAAAGGACACGGGGTCTGGCACTTCGACCAGGCGCTGCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

142

Amino Acids

16.36

Weight (kDa)

5.52

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	58, 305
AhdI	GACNNNNNGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	208, 244
AluI	AGCT	2 cut(s)	208, 244
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	1 cut(s)	415
ApeKI	GCWGC	2 cut(s)	244, 415
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	231, 402
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	424
BfoI	RGCGCY	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	2 cut(s)	245, 416
BlsI	GCNGC	2 cut(s)	246, 417
Bme1390I	CCNGG	1 cut(s)	410
BmeRI	GACNNNNNGTC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	141, 178
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	410
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	81, 153, 258
BseXI	GCAGC	2 cut(s)	231, 402
BsgI	GTGCAG	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	16, 82, 169
BspCNI	CTCAG	3 cut(s)	82, 154, 259
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	207
BssMI	GATC	3 cut(s)	16, 82, 169
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	90, 162, 267, 368
BstF5I	GGATG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	19, 85, 172
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	3 cut(s)	16, 82, 169
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	231, 402
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	3 cut(s)	208, 244, 335
CviKI_1	RGCY	3 cut(s)	208, 244, 335
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	90, 162, 267, 368
DpnI	GATC	3 cut(s)	18, 84, 171
DpnII	GATC	3 cut(s)	16, 82, 169
DriI	GACNNNNNGTC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	89
FaiI	YATR	4 cut(s)	87, 101, 198, 357
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	245, 416
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	245, 416
FspBI	CTAG	1 cut(s)	424
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	2 cut(s)	245, 416
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	416
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	62, 375
HpaI	GTTAAC	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	150, 163, 352, 380
Hpy188III	TCNNGA	4 cut(s)	20, 176, 221, 340
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	4 cut(s)	139, 200, 212, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	4 cut(s)	90, 162, 267, 368
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	413
KspAI	GTTAAC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	16, 82, 169
LmnI	GCTCC	2 cut(s)	205, 252
LpnPI	CCDG	8 cut(s)	122, 168, 189, 206, 311, 382, 395, 422
Lsp1109I	GCAGC	2 cut(s)	231, 402
LweI	GCATC	2 cut(s)	141, 178
MaeI	CTAG	1 cut(s)	424
MalI	GATC	3 cut(s)	18, 84, 171
MboI	GATC	3 cut(s)	16, 82, 169
MboII	GAAGA	3 cut(s)	86, 138, 283
MluCI	AATT	3 cut(s)	49, 95, 134
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	3 cut(s)	16, 82, 169
NlaIII	CATG	1 cut(s)	89
PaqCI	CACCTGC	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	246, 417
Ple19I	CGATCG	1 cut(s)	19
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PstNI	CAGNNNCTG	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	245, 416
Sau3AI	GATC	3 cut(s)	16, 82, 169
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	410
SetI	ASST	3 cut(s)	210, 246, 330
SfaNI	GCATC	2 cut(s)	141, 178
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	49, 95, 134
SspMI	CTAG	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	4 cut(s)	15, 65, 168, 405
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	49, 95, 134
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	244, 415
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	265
XapI	RAATTY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.