Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Reverse (-)

26807279 .. 26810901

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G256100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTTCTCAAAGGTTCTCCAGCCTCCTCTCACTTGATCACTCGCGGGGAGAACTTGGGTCCTCTGTTTTCCTCTGCTCCATCTTTATCTTCGTCCAAGCTTTCGTATTCGTTCTCTCCTCTGAACTCGTTCACATCTCTGAATTCGATTCTTCGGTTCCCTCCGACGAGAAATGAAGGTGGGGTTGTGGTCTGTGCGTCCAAGAATGCGAATAATCGGCCACTTACCGGTGTGGTTTTCGAGCCATTTGAAGAGGTGAAGAAGGAGCTAGAACTCGTACCTACTCTTCCACAAGTCTCTCTTGCTCGCCAGAAGTTTACCAATGAAAGCGAGGCAGCTATTAACGAACAGATCAATGTGGAATACAACGTCTCCTACGTTTACCATGCCATGTATGCCTATTTCGACAGGGACAATGTAGCGCTCAAGGGTCTTGCCAAGTTTTTCAAGGAATCGAGTGAGGAAGAGAGGGACCATGCTGAGAAGCTTATGGAATACCAGAATAAACGCGGTGGAAGAGTGAAATTGCAGTCTATTTTGATGCCTGTTTCTGAGTTTGATCATGCAGAGAAAGGAGATGCTTTATATGCAATGGAGCTTGCATTGTCTCTGGAGAAACTGACAAATGAAAAGCTGCTCAACTTACACCATGTTGCTGAGAAGAACAAAGATGTGCAGTTAACAGATTTCGTTGAAAGCGAGTTTTTGACTGAGCAGGTGGAAGCCATCAAGAAAATATCTGAATATGTTGCTCAACTAAGGAGAGTCGGGAAAGGACATGGGGTTTGGCACTTCGATCAGGCACTGCTTCATGGGGATGGAGCCGTTGATGCAATTGCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015979 GO:0016020 GO:0019725 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

282

Amino Acids

31.38

Weight (kDa)

5.77

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AccII	CGCG	2 cut(s)	45, 510
AciI	CCGC	2 cut(s)	45, 510
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	142
AfaI	GTAC	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	251, 448, 695
AluBI	AGCT	6 cut(s)	100, 268, 338, 487, 598, 634
AluI	AGCT	6 cut(s)	100, 268, 338, 487, 598, 634
Alw26I	GTCTC	3 cut(s)	301, 376, 612
AlwNI	CAGNNNCTG	1 cut(s)	805
Aor51HI	AGCGCT	1 cut(s)	423
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	335, 634, 839
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	768, 800
AsiGI	ACCGGT	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	59, 472
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	2 cut(s)	59, 472
BarI	GAAGNNNNNNTAC	2 cut(s)	270, 302
BbvI	GCAGC	3 cut(s)	347, 621, 826
BccI	CCATC	3 cut(s)	88, 734, 812
BceAI	ACGGC	1 cut(s)	809
BclI	TGATCA	2 cut(s)	36, 559
BcoDI	GTCTC	3 cut(s)	301, 376, 612
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	3 cut(s)	336, 635, 840
BlsI	GCNGC	3 cut(s)	337, 636, 841
Bme18I	GGWCC	2 cut(s)	59, 472
BmgT120I	GGNCC	2 cut(s)	59, 472
BmiI	GGNNCC	4 cut(s)	60, 158, 473, 823
BmsI	GCATC	3 cut(s)	531, 568, 820
BpmI	CTGGAG	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	823
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	4 cut(s)	471, 543, 648, 702
BseRI	GAGGAG	2 cut(s)	16, 108
BseXI	GCAGC	3 cut(s)	347, 621, 826
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	2 cut(s)	45, 510
BshFI	GGCC	1 cut(s)	220
BshTI	ACCGGT	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	2 cut(s)	425, 485
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	301, 376, 612
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	425, 485
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	36, 351, 559, 796
BspACI	CCGC	2 cut(s)	45, 510
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	4 cut(s)	472, 544, 649, 703
BspFNI	CGCG	2 cut(s)	45, 510
BspLI	GGNNCC	4 cut(s)	60, 158, 473, 823
BspMI	ACCTGC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssMI	GATC	4 cut(s)	36, 351, 559, 796
Bst6I	CTCTTC	4 cut(s)	246, 291, 459, 511
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	2 cut(s)	307, 600
BstDEI	CTNAG	5 cut(s)	480, 552, 657, 711, 758
BstF5I	GGATG	1 cut(s)	823
BstFNI	CGCG	2 cut(s)	45, 510
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	4 cut(s)	39, 354, 562, 799
BstMAI	GTCTC	3 cut(s)	301, 376, 612
BstMBI	GATC	4 cut(s)	36, 351, 559, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 587, 830, 839
BstUI	CGCG	2 cut(s)	45, 510
BstV1I	GCAGC	3 cut(s)	347, 621, 826
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	823
BtsI	GCAGTG	1 cut(s)	803
BtsIMutI	CAGTG	1 cut(s)	803
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	2 cut(s)	307, 600
CaiI	CAGNNNCTG	1 cut(s)	805
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	59, 472
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	7 cut(s)	386, 391, 476, 563, 650, 779, 812
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	5 cut(s)	480, 552, 657, 711, 758
DpnI	GATC	4 cut(s)	38, 353, 561, 798
DpnII	GATC	4 cut(s)	36, 351, 559, 796
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	4 cut(s)	246, 291, 459, 511
EarI	CTCTTC	4 cut(s)	246, 291, 459, 511
Eco47I	GGWCC	2 cut(s)	59, 472
Eco47III	AGCGCT	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	7 cut(s)	389, 394, 479, 566, 653, 782, 815
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	2 cut(s)	425, 485
FatI	CATG	7 cut(s)	385, 390, 475, 562, 649, 778, 811
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	2 cut(s)	36, 559
Fnu4HI	GCNGC	3 cut(s)	336, 635, 840
FokI	GGATG	1 cut(s)	830
Fsp4HI	GCNGC	3 cut(s)	336, 635, 840
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	3 cut(s)	336, 635, 840
GsuI	CTGGAG	1 cut(s)	632
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	7 cut(s)	389, 394, 479, 566, 653, 782, 815
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	2 cut(s)	98, 485
HinfI	GANTC	3 cut(s)	148, 452, 765
HpaI	GTTAAC	1 cut(s)	681
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	4 cut(s)	132, 318, 382, 681
Hpy188I	TCNGA	5 cut(s)	123, 141, 165, 553, 742
Hpy188III	TCNNGA	3 cut(s)	611, 730, 769
Hpy8I	GTNNAC	4 cut(s)	132, 318, 382, 681
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	170, 256
HpyCH4IV	ACGT	2 cut(s)	369, 378
HpyCH4V	TGCA	6 cut(s)	529, 566, 590, 602, 676, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 587, 830, 839
HpyF3I	CTNAG	5 cut(s)	480, 552, 657, 711, 758
HpySE526I	ACGT	2 cut(s)	369, 378
Hsp92II	CATG	7 cut(s)	389, 394, 479, 566, 653, 782, 815
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	2 cut(s)	36, 559
KspAI	GTTAAC	1 cut(s)	681
Kzo9I	GATC	4 cut(s)	36, 351, 559, 796
LmnI	GCTCC	4 cut(s)	82, 265, 595, 821
LpnPI	CCDG	9 cut(s)	33, 241, 323, 394, 512, 558, 596, 701, 785
Lsp1109I	GCAGC	3 cut(s)	347, 621, 826
LweI	GCATC	3 cut(s)	531, 568, 820
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	2 cut(s)	369, 378
MalI	GATC	4 cut(s)	38, 353, 561, 798
MboI	GATC	4 cut(s)	36, 351, 559, 796
MboII	GAAGA	8 cut(s)	81, 143, 263, 271, 278, 476, 528, 673
MfeI	CAATTG	1 cut(s)	834
MluCI	AATT	3 cut(s)	142, 524, 834
MlyI	GAGTC	1 cut(s)	774
MmeI	TCCRAC	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	342, 680
MslI	CAYNNNNRTG	1 cut(s)	816
MspI	CCGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	834
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	2 cut(s)	45, 510
MwoI	GCNNNNNNNGC	4 cut(s)	395, 587, 830, 839
NdeII	GATC	4 cut(s)	36, 351, 559, 796
NlaIII	CATG	7 cut(s)	389, 394, 479, 566, 653, 782, 815
NlaIV	GGNNCC	4 cut(s)	60, 158, 473, 823
PaqCI	CACCTGC	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 696
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	148, 452
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	337, 636, 841
PleI	GAGTC	1 cut(s)	773
PpsI	GAGTC	1 cut(s)	773
PpuMI	RGGWCCY	1 cut(s)	59
Psp5II	RGGWCCY	1 cut(s)	59
PspN4I	GGNNCC	4 cut(s)	60, 158, 473, 823
PspPI	GGNCC	2 cut(s)	59, 472
PspPPI	RGGWCCY	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	805
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	816
SaqAI	TTAA	2 cut(s)	342, 680
SatI	GCNGC	3 cut(s)	336, 635, 840
Sau3AI	GATC	4 cut(s)	36, 351, 559, 796
Sau96I	GGNCC	2 cut(s)	59, 472
SchI	GAGTC	1 cut(s)	774
SfaNI	GCATC	3 cut(s)	531, 568, 820
SinI	GGWCC	2 cut(s)	59, 472
SmiMI	CAYNNNNRTG	1 cut(s)	816
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	142, 524, 834
SsiI	CCGC	2 cut(s)	45, 510
SspMI	CTAG	1 cut(s)	269
TaiI	ACGT	2 cut(s)	372, 381
TaqI	TCGA	5 cut(s)	146, 240, 405, 455, 795
TasI	AATT	3 cut(s)	142, 524, 834
TfiI	GAWTC	2 cut(s)	148, 452
Tru1I	TTAA	2 cut(s)	342, 680
Tru9I	TTAA	2 cut(s)	342, 680
TscAI	CASTG	1 cut(s)	810
TseI	GCWGC	3 cut(s)	335, 634, 839
TspDTI	ATGAA	4 cut(s)	189, 339, 642, 800
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	2 cut(s)	59, 472
XapI	RAATTY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.