Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Forward (+)

7600589 .. 7603544

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTTGTCAAAGCTTCTCCGGCCTCCGCGTCTCAGTTTCTCAGTCGCGGTGAGAGCTTGTTTTCCTCTGCTCAATTGTCGTCTTCTTCGATTTCCTACTCCGCCGCTCCTCTGAACTCGTCCACGTCTCTGTTTTTGAGTCTGCGGTCATCGCCGGCGAGAATCGATGGCGGGGCCGTGGTCTGTGCGGCCTCAAAGAGTTCGAACAGCCGGCCGCTTACCGGTGTGGTTTTCGAGCCGTTTGAGGAGGTGAAGAAGGAGCTTGATCTCGTCCCTATGCTCCCTCAAATCTCTCTGGCTCGACAGAAGTACAGTGAGGAGAGTGAGGCTGCCATTAACGAGCAGATCAATGTGGAGTACAACGTATCCTATGTGTACCATGCCATGTATGCCTACTTCGACAGGGACAATGTCGCACTCAGGGGTCTTGCCAAGTTTTTCAAGGAATCAAGTGAGGAGGAGAGGGAGCATGCTGAGAAATTGATGGAATACCAGAATAAGCGTGGTGGAAGAGTGAAATTGCAATCAATACTGATGCCTCTCTCAGAGTTCGATCATGCTGAGAAAGGAGATGCTCTATATGCAATGGAGCTTGCATTGTCTCTGGAGAAACTGACAAATGAAAAACTGCTTCACTTGCACCATGTTGCTGACAAGAACAAAGATGTGCAACTAGCTGATTTTGTTGAAAGCGAGTTTTTGGCTGAGCAGGTGGAGGCAATCAAGAAGATCTCAGAATATGTTGCTCAACTCAGGAGGGTTGGCAAAGGACATGGGACTTGGCACTTCGATCAGATGCTGTTACATGATGAGGTTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

275

Amino Acids

30.6

Weight (kDa)

5.54

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	110 - 254	7.4e-34	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	700
Acc36I	ACCTGC	1 cut(s)	700
AccBSI	CCGCTC	1 cut(s)	107
AccII	CGCG	2 cut(s)	29, 48
AciI	CCGC	8 cut(s)	27, 48, 102, 105, 145, 171, 188, 215
AcoI	YGGCCR	1 cut(s)	212
AfaI	GTAC	3 cut(s)	311, 359, 377
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	442, 689
AjiI	CACGTC	1 cut(s)	126
AluBI	AGCT	5 cut(s)	14, 57, 262, 592, 677
AluI	AGCT	5 cut(s)	14, 57, 262, 592, 677
Alw26I	GTCTC	3 cut(s)	36, 132, 606
AlwNI	CAGNNNCTG	1 cut(s)	799
AoxI	GGCC	4 cut(s)	21, 174, 189, 212
ApeKI	GCWGC	2 cut(s)	329, 818
AsiGI	ACCGGT	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	2 cut(s)	62, 262
AsuII	TTCGAA	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	316, 805
BccI	CCATC	2 cut(s)	161, 478
BceAI	ACGGC	2 cut(s)	161, 223
BciVI	GTATCC	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	36, 132, 606
BfaI	CTAG	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	5 cut(s)	105, 189, 215, 330, 819
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	5 cut(s)	106, 190, 216, 331, 820
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	3 cut(s)	525, 562, 786
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	626
Bpu1102I	GCTNAGC	1 cut(s)	705
Bpu14I	TTCGAA	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	3 cut(s)	154, 210, 221
Bse3DI	GCAATG	1 cut(s)	591
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	9 cut(s)	47, 55, 433, 465, 552, 558, 696, 747, 766
BseRI	GAGGAG	5 cut(s)	99, 260, 332, 470, 473
BseX3I	CGGCCG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	316, 805
Bsh1236I	CGCG	2 cut(s)	29, 48
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	23, 176, 191, 214
BshTI	ACCGGT	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	215
BsiSI	CCGG	4 cut(s)	20, 155, 211, 222
BslFI	GGGAC	3 cut(s)	257, 419, 790
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	3 cut(s)	36, 132, 606
BsmBI	CGTCTC	2 cut(s)	36, 132
BsmFI	GGGAC	3 cut(s)	257, 419, 790
BsnI	GGCC	4 cut(s)	23, 176, 191, 214
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	265, 345, 553, 729, 790
Bsp1720I	GCTNAGC	1 cut(s)	705
BspACI	CCGC	8 cut(s)	27, 48, 102, 105, 145, 171, 188, 215
BspANI	GGCC	4 cut(s)	23, 176, 191, 214
BspCNI	CTCAG	9 cut(s)	46, 54, 432, 466, 553, 557, 697, 746, 765
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	2 cut(s)	29, 48
BspLI	GGNNCC	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	700
BspT104I	TTCGAA	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	591
BsrFI	RCCGGY	3 cut(s)	154, 210, 221
BssAI	RCCGGY	3 cut(s)	154, 210, 221
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	5 cut(s)	265, 345, 553, 729, 790
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	505
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	4 cut(s)	156, 212, 471, 594
BstDEI	CTNAG	9 cut(s)	33, 41, 419, 474, 544, 561, 705, 733, 752
BstDSI	CCRYGG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	29, 48
BstKTI	GATC	5 cut(s)	268, 348, 556, 732, 793
BstMAI	GTCTC	3 cut(s)	36, 132, 606
BstMBI	GATC	5 cut(s)	265, 345, 553, 729, 790
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 54, 151, 389, 581, 637
BstNSI	RCATGY	1 cut(s)	473
BstUI	CGCG	2 cut(s)	29, 48
BstV1I	GCAGC	2 cut(s)	316, 805
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	729
BstYI	RGATCY	1 cut(s)	729
BstZI	CGGCCG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	23, 176, 191, 214
BsuTUI	ATCGAT	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	4 cut(s)	156, 212, 471, 594
CaiI	CAGNNNCTG	1 cut(s)	799
Cfr10I	RCCGGY	3 cut(s)	154, 210, 221
Cfr13I	GGNCC	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	310, 358, 376
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	7 cut(s)	380, 385, 470, 557, 644, 773, 806
CviQI	GTAC	3 cut(s)	310, 358, 376
DdeI	CTNAG	9 cut(s)	33, 41, 419, 474, 544, 561, 705, 733, 752
DpnI	GATC	5 cut(s)	267, 347, 555, 731, 792
DpnII	GATC	5 cut(s)	265, 345, 553, 729, 790
EaeI	YGGCCR	1 cut(s)	212
EagI	CGGCCG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
EciI	GGCGGA	1 cut(s)	91
EclXI	CGGCCG	1 cut(s)	212
Eco52I	CGGCCG	1 cut(s)	212
Esp3I	CGTCTC	2 cut(s)	36, 132
FaeI	CATG	7 cut(s)	383, 388, 473, 560, 647, 776, 809
FaqI	GGGAC	3 cut(s)	257, 419, 790
FatI	CATG	7 cut(s)	379, 384, 469, 556, 643, 772, 805
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	5 cut(s)	105, 189, 215, 330, 819
Fsp4HI	GCNGC	5 cut(s)	105, 189, 215, 330, 819
FspBI	CTAG	1 cut(s)	674
GluI	GCNGC	5 cut(s)	105, 189, 215, 330, 819
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	4 cut(s)	23, 176, 191, 214
HapII	CCGG	4 cut(s)	20, 155, 211, 222
HgaI	GACGC	1 cut(s)	18
Hin1II	CATG	7 cut(s)	383, 388, 473, 560, 647, 776, 809
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	3 cut(s)	139, 162, 446
HpaII	CCGG	4 cut(s)	20, 155, 211, 222
HphI	GGTGA	2 cut(s)	62, 262
Hpy166II	GTNNAC	2 cut(s)	123, 376
Hpy188I	TCNGA	4 cut(s)	114, 547, 736, 795
Hpy188III	TCNNGA	3 cut(s)	605, 724, 754
Hpy8I	GTNNAC	2 cut(s)	123, 376
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	2 cut(s)	125, 363
HpyCH4V	TGCA	6 cut(s)	523, 584, 596, 640, 670, 821
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 54, 151, 389, 581, 637
HpyF3I	CTNAG	9 cut(s)	33, 41, 419, 474, 544, 561, 705, 733, 752
HpySE526I	ACGT	2 cut(s)	125, 363
Hsp92II	CATG	7 cut(s)	383, 388, 473, 560, 647, 776, 809
KroI	GCCGGC	2 cut(s)	154, 210
KroNI	GCCGGC	2 cut(s)	156, 212
Kzo9I	GATC	5 cut(s)	265, 345, 553, 729, 790
LmnI	GCTCC	5 cut(s)	112, 259, 285, 466, 589
Lsp1109I	GCAGC	2 cut(s)	316, 805
LweI	GCATC	3 cut(s)	525, 562, 786
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	2 cut(s)	125, 363
MaeIII	GTNAC	1 cut(s)	801
MalI	GATC	5 cut(s)	267, 347, 555, 731, 792
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	5 cut(s)	265, 345, 553, 729, 790
MboII	GAAGA	5 cut(s)	75, 78, 265, 522, 739
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	1 cut(s)	729
MluCI	AATT	3 cut(s)	74, 479, 518
MlyI	GAGTC	1 cut(s)	148
MreI	CGCCGGCG	1 cut(s)	154
MroNI	GCCGGC	2 cut(s)	154, 210
MseI	TTAA	1 cut(s)	336
MspI	CCGG	4 cut(s)	20, 155, 211, 222
MunI	CAATTG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	29, 48
MwoI	GCNNNNNNNGC	6 cut(s)	20, 54, 151, 389, 581, 637
NaeI	GCCGGC	2 cut(s)	156, 212
NdeII	GATC	5 cut(s)	265, 345, 553, 729, 790
NgoMIV	GCCGGC	2 cut(s)	154, 210
NlaIII	CATG	7 cut(s)	383, 388, 473, 560, 647, 776, 809
NlaIV	GGNNCC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	203
PaeI	GCATGC	1 cut(s)	473
PaqCI	CACCTGC	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdiI	GCCGGC	2 cut(s)	156, 212
PfeI	GAWTC	2 cut(s)	162, 446
PflFI	GACNNNGTC	1 cut(s)	410
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	5 cut(s)	106, 190, 216, 331, 820
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	729
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	3 cut(s)	311, 359, 377
RsaNI	GTAC	3 cut(s)	310, 358, 376
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	5 cut(s)	105, 189, 215, 330, 819
Sau3AI	GATC	5 cut(s)	265, 345, 553, 729, 790
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	525, 562, 786
SfuI	TTCGAA	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	154
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	3 cut(s)	74, 479, 518
SsiI	CCGC	8 cut(s)	27, 48, 102, 105, 145, 171, 188, 215
SspMI	CTAG	1 cut(s)	674
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	2 cut(s)	128, 366
TaqI	TCGA	8 cut(s)	89, 165, 203, 234, 301, 399, 552, 789
TasI	AATT	3 cut(s)	74, 479, 518
TatI	WGTACW	2 cut(s)	309, 357
TauI	GCSGC	3 cut(s)	107, 191, 217
TfiI	GAWTC	2 cut(s)	162, 446
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	329, 818
TspDTI	ATGAA	1 cut(s)	636
TspRI	CASTG	1 cut(s)	319
Tth111I	GACNNNGTC	1 cut(s)	410
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.