Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008237

Physical Location & Seq

Genomic Coordinates Reverse (-)

60379905 .. 60382854

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCTTCTCAAAGCCTCTCCGGCCTCCGCGTCTCAGTTGCTCACTCGCGGCGAGAGCTTGTTTTCCTCTTCTGCTCCATTTTCGTCTTCTTCGATTTCCTACTCCGCCGCTCCTCTGAACTCGTCCACGTCTCTGTTTTCGAGTCTGCGGTCATCGCCGGGGAGAAATGACGGCGGGGCCGTGGTCTGTGCGGCCTCGAAGAGTTCGAACAGCCGGCCGCTTACCGGTGTGGTTTTCGAGCCGTTTGAGGAGGTGAAGAAGGAGCTTGATCTCGTCCCCATGCTCCCTCAAATCTCTCTGGCTCGCCAGAAGTACGGTGAGGACAGCGAGGCTGCCGTTAACGAGCAGATCAATGTGGAGTACAACGTATCCTATGTGTACCATGCCATGTATGCCTACTTCGACAGGGACAATGTCGCTCTCAGGGGTCTTGCCAAGTTTTTCAAGGAATCAAGTGAGGAGGAGAGGGAGCATGCTGAGAAATTGATGGAATACCAGAATAAGCGTGGTGGAAGAGTGAAATTGCAATCAATACTGATGCCTCTTTCAGAGTTCGATCATGCTGAGAAAGGAGATGCTCTATACGCAATGGAGCTTGCATTGTCTCTAGAGAAACTGACAAATGAAAAGCTGCTTCACTTGCACCATGTAAGGCATCTATTCTATATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

224

Amino Acids

24.89

Weight (kDa)

6.0

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	111 - 217	2e-22	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40300 AT3G11050 AT3G56090
fragaria_vesca	FvH4_7g25100 FvH4_7g25100
malus_domestica	MD01G1157700.v1.1 MD07G1226500.v1.1 MD08G1149100.v1.1
prunus_persica	Prupe.2G256100_v2.0.a1
pyrus_communis	pycom01g17440 pycom07g20500
rosa_chinensis	RchiOBHm_Chr1g0370951
rosa_laevigata	RLG00000026996
rosa_multiflora	Rmu_co8375909.1_g000001 Rmu_sc0001018.1_g000005 Rmu_sc0026179.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286100
rosa_rugosa	Rorug01G0360300
rosa_samantha	Rh1AG370500 Rh1BG334200 Rh1CG347500 Rh1DG365400
rosa_wichuraiana	Rw1G032610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	110
AccII	CGCG	2 cut(s)	29, 48
AciI	CCGC	8 cut(s)	27, 48, 105, 108, 148, 174, 191, 218
AcoI	YGGCCR	1 cut(s)	215
AfaI	GTAC	3 cut(s)	314, 362, 380
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgeI	ACCGGT	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	445
AjiI	CACGTC	1 cut(s)	129
AluBI	AGCT	4 cut(s)	57, 265, 595, 631
AluI	AGCT	4 cut(s)	57, 265, 595, 631
Alw26I	GTCTC	3 cut(s)	36, 135, 609
AoxI	GGCC	4 cut(s)	21, 177, 192, 215
ApeKI	GCWGC	2 cut(s)	332, 631
AsiGI	ACCGGT	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	265, 329
AsuII	TTCGAA	1 cut(s)	206
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	319, 618
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	4 cut(s)	164, 187, 226, 320
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	3 cut(s)	36, 135, 609
BfaI	CTAG	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	379
BglI	GCCNNNNNGGC	1 cut(s)	20
BisI	GCNGC	6 cut(s)	49, 108, 192, 218, 333, 632
BlsI	GCNGC	6 cut(s)	50, 109, 193, 219, 334, 633
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	528, 565, 664
BpiI	GAAGAC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	158, 180
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse118I	RCCGGY	2 cut(s)	213, 224
Bse3DI	GCAATG	1 cut(s)	594
BseDI	CCNNGG	2 cut(s)	158, 180
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	4 cut(s)	47, 436, 468, 555
BseRI	GAGGAG	4 cut(s)	102, 263, 473, 476
BseX3I	CGGCCG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	319, 618
Bsh1236I	CGCG	2 cut(s)	29, 48
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	4 cut(s)	23, 179, 194, 217
BshTI	ACCGGT	1 cut(s)	224
BsiEI	CGRYCG	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	20, 158, 214, 225
BslFI	GGGAC	2 cut(s)	260, 422
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	3 cut(s)	36, 135, 609
BsmBI	CGTCTC	2 cut(s)	36, 135
BsmFI	GGGAC	2 cut(s)	260, 422
BsnI	GGCC	4 cut(s)	23, 179, 194, 217
Bsp119I	TTCGAA	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	268, 348, 556
BspACI	CCGC	8 cut(s)	27, 48, 105, 108, 148, 174, 191, 218
BspANI	GGCC	4 cut(s)	23, 179, 194, 217
BspCNI	CTCAG	4 cut(s)	46, 435, 469, 556
BspFNI	CGCG	2 cut(s)	29, 48
BspLI	GGNNCC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	2 cut(s)	213, 224
BssAI	RCCGGY	2 cut(s)	213, 224
BssECI	CCNNGG	2 cut(s)	158, 180
BssMI	GATC	3 cut(s)	268, 348, 556
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	3 cut(s)	73, 194, 508
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	215, 304, 474, 597
BstDEI	CTNAG	5 cut(s)	33, 422, 477, 564, 672
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	29, 48
BstKTI	GATC	3 cut(s)	271, 351, 559
BstMAI	GTCTC	3 cut(s)	36, 135, 609
BstMBI	GATC	3 cut(s)	268, 348, 556
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 54, 154, 392, 584, 640
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	2 cut(s)	29, 48
BstV1I	GCAGC	2 cut(s)	319, 618
BstV2I	GAAGAC	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	4 cut(s)	23, 179, 194, 217
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	129
Cac8I	GCNNGC	4 cut(s)	215, 304, 474, 597
Cfr10I	RCCGGY	2 cut(s)	213, 224
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	313, 361, 379
CspAI	ACCGGT	1 cut(s)	224
CviAII	CATG	6 cut(s)	280, 383, 388, 473, 560, 647
CviQI	GTAC	3 cut(s)	313, 361, 379
DdeI	CTNAG	5 cut(s)	33, 422, 477, 564, 672
DpnI	GATC	3 cut(s)	270, 350, 558
DpnII	GATC	3 cut(s)	268, 348, 556
EaeI	YGGCCR	1 cut(s)	215
EagI	CGGCCG	1 cut(s)	215
Eam1104I	CTCTTC	3 cut(s)	73, 194, 508
EarI	CTCTTC	3 cut(s)	73, 194, 508
EciI	GGCGGA	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	215
Eco52I	CGGCCG	1 cut(s)	215
Esp3I	CGTCTC	2 cut(s)	36, 135
FaeI	CATG	6 cut(s)	283, 386, 391, 476, 563, 650
FaqI	GGGAC	2 cut(s)	260, 422
FatI	CATG	6 cut(s)	279, 382, 387, 472, 559, 646
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	6 cut(s)	49, 108, 192, 218, 333, 632
Fsp4HI	GCNGC	6 cut(s)	49, 108, 192, 218, 333, 632
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	6 cut(s)	49, 108, 192, 218, 333, 632
HaeIII	GGCC	4 cut(s)	23, 179, 194, 217
HapII	CCGG	4 cut(s)	20, 158, 214, 225
HgaI	GACGC	1 cut(s)	18
Hin1II	CATG	6 cut(s)	283, 386, 391, 476, 563, 650
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	142, 449
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	4 cut(s)	20, 158, 214, 225
HphI	GGTGA	2 cut(s)	265, 329
Hpy166II	GTNNAC	3 cut(s)	126, 340, 379
Hpy188I	TCNGA	2 cut(s)	117, 550
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	3 cut(s)	126, 340, 379
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	128, 366
HpyCH4V	TGCA	3 cut(s)	526, 599, 643
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 54, 154, 392, 584, 640
HpyF3I	CTNAG	5 cut(s)	33, 422, 477, 564, 672
HpySE526I	ACGT	2 cut(s)	128, 366
Hsp92II	CATG	6 cut(s)	283, 386, 391, 476, 563, 650
KroI	GCCGGC	1 cut(s)	213
KroNI	GCCGGC	1 cut(s)	215
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	268, 348, 556
LmnI	GCTCC	6 cut(s)	79, 115, 262, 288, 469, 592
LpnPI	CCDG	9 cut(s)	33, 171, 227, 238, 284, 320, 391, 409, 509
Lsp1109I	GCAGC	2 cut(s)	319, 618
LweI	GCATC	3 cut(s)	528, 565, 664
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	128, 366
MalI	GATC	3 cut(s)	270, 350, 558
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	3 cut(s)	268, 348, 556
MboII	GAAGA	6 cut(s)	60, 78, 81, 211, 268, 525
MluCI	AATT	2 cut(s)	482, 521
MlyI	GAGTC	1 cut(s)	151
MroNI	GCCGGC	1 cut(s)	213
MseI	TTAA	1 cut(s)	339
MspI	CCGG	4 cut(s)	20, 158, 214, 225
MspR9I	CCNGG	1 cut(s)	159
MvnI	CGCG	2 cut(s)	29, 48
MwoI	GCNNNNNNNGC	6 cut(s)	20, 54, 154, 392, 584, 640
NaeI	GCCGGC	1 cut(s)	215
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	268, 348, 556
NgoMIV	GCCGGC	1 cut(s)	213
NlaIII	CATG	6 cut(s)	283, 386, 391, 476, 563, 650
NlaIV	GGNNCC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	476
NspV	TTCGAA	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	3 cut(s)	89, 177, 203
PdiI	GCCGGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	449
PflFI	GACNNNGTC	1 cut(s)	413
PinAI	ACCGGT	1 cut(s)	224
PkrI	GCNGC	6 cut(s)	50, 109, 193, 219, 334, 633
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	177
PsyI	GACNNNGTC	1 cut(s)	413
RsaI	GTAC	3 cut(s)	314, 362, 380
RsaNI	GTAC	3 cut(s)	313, 361, 379
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	6 cut(s)	49, 108, 192, 218, 333, 632
Sau3AI	GATC	3 cut(s)	268, 348, 556
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	7 cut(s)	59, 131, 255, 267, 369, 597, 633
SfaNI	GCATC	3 cut(s)	528, 565, 664
SfuI	TTCGAA	1 cut(s)	206
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	2 cut(s)	482, 521
SsiI	CCGC	8 cut(s)	27, 48, 105, 108, 148, 174, 191, 218
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	131, 369
TaqI	TCGA	7 cut(s)	92, 140, 197, 206, 237, 402, 555
TasI	AATT	2 cut(s)	482, 521
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	4 cut(s)	51, 110, 194, 220
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseI	GCWGC	2 cut(s)	332, 631
TspDTI	ATGAA	1 cut(s)	639
Tth111I	GACNNNGTC	1 cut(s)	413
XbaI	TCTAGA	1 cut(s)	607
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.