AT3G11240

Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3518472 .. 3521188
2717 bp
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UTR
Exon/CDS
Intron
AT3G11240.2

Sequence Viewer

Length: 1818 bp
ATGTCGTCGAAGAAAGCGAAGACGAAGAACGAGGCGAGTAGCAGCCGTGGTGGCATCGGCGGAGAGAGTATAGTCGCTGATTGTGGACGAAATAAATCAACTTGCGGTTACTGTAAATCTTCTACCCGCTTTAGTATTTCTCACGGTTTATGGACAGAGAGACTCACCGTTAATGACTATCAAGCTCTTCTTGACAGTGGATGGAGACGATCTGGCTGCTATCTTTACAAACCTGAGATGGAGAAGACTTGTTGCCCTTCTTATACAATCCGCTTGAAAGCAAGTGATTTTGTCCCTTCTAAGGAGCAGCAGCGAGTGCGTAGAAGAATAGAAAGGTTTTTGGATGGTGAACTAGATGCGAAGCCGAGTGAGCAGACAGAAGATCAAGATGTCTCTTTCTCCCGTGAAGTTTCAGTGTCAGTGAAAAAATCACTTGGAGCTGCTAAAAGAGAAAAAAACAATGAACTGGAACCAATCATGAAAGATTTGTCTGAACAAATTGATAATGCGGTACAAAAATGCATACAGAGTGGTGAGTTTCCTTCTAATGTTCAGATTCCCAAAGCTTCAGTAAAGAAAGTTTTTTCTGCTAAAAGGAAGAAACTAGCTGAAGGGTCAGAAGACCTCTTATACACCAGCAACATTGCTTTTCCAATAGTAGCTGCTATGAAACACACACAGACATTGGAGAAAGGCAAAAACGTAGAAGAAAACAGATTATCACCAGAGGCTGTTTCTGAGAAGTTGTTAAGTGCAATGAATAAGGTTGGAGAGTTTACTGGTTTTTCTGTTAAGGTCTCCAAGGGTCATATCAACTTCCTTTCAGCTACCCAAGTTACTTCCTCAGATAGAAATGAAGGTGAAGAAAGCCTATGTGCTACAACAATAAAGTCTTCTTCGAACAAGCTTCATGCAAGAAAGCGGAAGCTGGAGATGCACTTGAAAAGGTCGAGTTTTGAACCAGAGGAATATGAATTATACAAACGGTATCAAATGAAAGTGCATAATGATAAGCCGGAGAGCATCTCAGAAACTTCATACAAACGGTTTTTGGTAGACACTCCGCTCACTGAAGTTCCTTCTTCAGGTTATGATGATGAAGAAAAGATTCCTCTTTGTGGCTTTGGTTCTTTCCATCAACAATACCGAGTTGATGACCGTCTAATTGCTGTTGGGGTGATTGATATTCTTCCTAAATGTTTGTCTAGTAAATACCTGTTCTGGGATCCGGATTTCGCATCCTTGTCTCTTGGAAACTACTCAGCCCTGCAAGAAATCGATTGGGTAAAACAGAACCAAGCTCATTGCTCTACTCTTGAGTATTACTATCTTGGCTATTACATACATTCCTGTAACAAGATGAGATATAAAGCAGCCTATCGTCCGTCTGAGCTTCTATGCCCTCTCCGGTACCAATGGGTTCCATTCGAAGTAGCCAAGCCTCTGCTTGATAAAAAGCCTTATTCCGTCTTGTCCAATATCAGTAAGGTTTCTTCATCATCATCATCACCTCAAGCTTCTGAAACCCTATTGGAATCTACGAGTGAACATGAAGACATGGAACAAGGGGATACAAATGATGATGATGATGAAATGTATAACTCTGATGAAGACTCAGACTCAGACTCTAGCAGTAGCAGAAACCGGAGTGACATTACCAATATCCTTATCAGTCTTAATGGACCTCGACTTCGATACAAGGATATACCGCGGTTCAAGAATCCAGTGGTTCAGAAACAACTCGAATCGATGTTGGTTAGTTACAGGAAAGTTGTTGGGGCCGAGCTATCGGAGATAATGGTGTATGAACTCCGGTAA

Protein Analysis

605

Amino Acids

68.6

Weight (kDa)

7.11

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATE_C PF04377 163 - 308 7.5e-47 Arginine-tRNA-protein transferase, C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1410
AccB1I GGYRCC 1 cut(s) 1410
AccBSI CCGCTC 1 cut(s) 1066
AccI GTMKAC 1 cut(s) 1056
AccII CGCG 1 cut(s) 1711
AccIII TCCGGA 1 cut(s) 1228
AciI CCGC 9 cut(s) 60, 105, 127, 271, 509, 922, 1064, 1709, 1711
AclWI GGATC 2 cut(s) 1220, 1233
AcuI CTGAAG 4 cut(s) 552, 630, 1068, 1092
AfaI GTAC 2 cut(s) 513, 1412
AfiI CCNNNNNNNGG 4 cut(s) 301, 1085, 1118, 1222
AgsI TTSAA 4 cut(s) 277, 943, 959, 1717
Alw26I GTCTC 5 cut(s) 154, 199, 397, 802, 1251
AlwI GGATC 2 cut(s) 1220, 1233
AlwNI CAGNNNCTG 1 cut(s) 731
Aor13HI TCCGGA 1 cut(s) 1228
AoxI GGCC 1 cut(s) 1779
ApeKI GCWGC 7 cut(s) 42, 216, 307, 310, 440, 662, 1373
ArsI GACNNNNNNTTYG 2 cut(s) 1674, 1706
Asp700I GAANNNNTTC 1 cut(s) 1107
Asp718I GGTACC 1 cut(s) 1410
AspS9I GGNCC 2 cut(s) 1682, 1779
AsuHPI GGTGA 7 cut(s) 157, 359, 545, 714, 872, 1189, 1500
AsuII TTCGAA 2 cut(s) 899, 1428
AvaII GGWCC 1 cut(s) 1682
BamHI GGATCC 1 cut(s) 1225
BanI GGYRCC 1 cut(s) 1410
BarI GAAGNNNNNNTAC 2 cut(s) 1477, 1509
BbsI GAAGAC 6 cut(s) 26, 251, 627, 885, 1560, 1617
BbvI GCAGC 7 cut(s) 54, 203, 319, 322, 427, 649, 1385
BccI CCATC 4 cut(s) 195, 232, 338, 1143
BceAI ACGGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BciVI GTATCC 1 cut(s) 1564
BcoDI GTCTC 5 cut(s) 154, 199, 397, 802, 1251
BfaI CTAG 4 cut(s) 353, 605, 1206, 1629
BfuI GTATCC 1 cut(s) 1564
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 7 cut(s) 43, 217, 308, 311, 441, 663, 1374
BlsI GCNGC 7 cut(s) 44, 218, 309, 312, 442, 664, 1375
Bme18I GGWCC 1 cut(s) 1682
BmgT120I GGNCC 2 cut(s) 1682, 1779
BmiI GGNNCC 5 cut(s) 471, 1227, 1412, 1422, 1780
BmsI GCATC 5 cut(s) 63, 346, 924, 1032, 1247
BpiI GAAGAC 6 cut(s) 26, 251, 627, 885, 1560, 1617
BplI GAGNNNNNCTC 2 cut(s) 1010, 1042
BpmI CTGGAG 1 cut(s) 950
Bpu14I TTCGAA 2 cut(s) 899, 1428
BpuEI CTTGAG 2 cut(s) 1337, 1497
Bsa29I ATCGAT 2 cut(s) 1278, 1748
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 3 cut(s) 46, 801, 1709
BsaWI WCCGGW 4 cut(s) 1228, 1407, 1644, 1812
Bsc4I CCNNNNNNNGG 4 cut(s) 301, 1085, 1118, 1222
Bse1I ACTGG 3 cut(s) 471, 784, 1724
Bse3DI GCAATG 3 cut(s) 642, 762, 1303
BseAI TCCGGA 1 cut(s) 1228
BseCI ATCGAT 2 cut(s) 1278, 1748
BseDI CCNNGG 3 cut(s) 46, 801, 1709
BseGI GGATG 3 cut(s) 206, 349, 1238
BseLI CCNNNNNNNGG 4 cut(s) 301, 1085, 1118, 1222
BseMI GCAATG 3 cut(s) 642, 762, 1303
BseMII CTCAG 8 cut(s) 225, 729, 858, 1041, 1275, 1380, 1629, 1635
BseNI ACTGG 3 cut(s) 471, 784, 1724
BseXI GCAGC 7 cut(s) 54, 203, 319, 322, 427, 649, 1385
Bsh1236I CGCG 1 cut(s) 1711
BshFI GGCC 1 cut(s) 1781
BshNI GGYRCC 1 cut(s) 1410
BshVI ATCGAT 2 cut(s) 1278, 1748
BsiSI CCGG 5 cut(s) 1016, 1229, 1408, 1645, 1813
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 4 cut(s) 301, 1085, 1118, 1222
BsmAI GTCTC 5 cut(s) 154, 199, 397, 802, 1251
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 1781
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 2 cut(s) 899, 1428
Bsp13I TCCGGA 1 cut(s) 1228
Bsp143I GATC 3 cut(s) 209, 382, 1225
BspACI CCGC 9 cut(s) 60, 105, 127, 271, 509, 922, 1064, 1709, 1711
BspANI GGCC 1 cut(s) 1781
BspCNI CTCAG 8 cut(s) 226, 730, 857, 1040, 1274, 1381, 1628, 1634
BspDI ATCGAT 2 cut(s) 1278, 1748
BspEI TCCGGA 1 cut(s) 1228
BspFNI CGCG 1 cut(s) 1711
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 5 cut(s) 471, 1227, 1412, 1422, 1780
BspPI GGATC 2 cut(s) 1220, 1233
BspQI GCTCTTC 1 cut(s) 192
BspT104I TTCGAA 2 cut(s) 899, 1428
BspT107I GGYRCC 1 cut(s) 1410
BspTNI GGTCTC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 1066
BsrDI GCAATG 3 cut(s) 642, 762, 1303
BsrI ACTGG 3 cut(s) 471, 784, 1724
BssECI CCNNGG 3 cut(s) 46, 801, 1709
BssMI GATC 3 cut(s) 209, 382, 1225
BssT1I CCWWGG 1 cut(s) 801
Bst4CI ACNGT 7 cut(s) 113, 146, 169, 197, 987, 1047, 1160
Bst6I CTCTTC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 316
BstBI TTCGAA 2 cut(s) 899, 1428
BstDEI CTNAG 9 cut(s) 234, 300, 738, 844, 1027, 1261, 1389, 1615, 1621
BstDSI CCRYGG 2 cut(s) 46, 1709
BstENI CCTNNNNNAGG 1 cut(s) 1083
BstF5I GGATG 3 cut(s) 206, 349, 1238
BstFNI CGCG 1 cut(s) 1711
BstKTI GATC 3 cut(s) 212, 385, 1228
BstMAI GTCTC 5 cut(s) 154, 199, 397, 802, 1251
BstMBI GATC 3 cut(s) 209, 382, 1225
BstMWI GCNNNNNNNGC 4 cut(s) 51, 316, 370, 934
BstUI CGCG 1 cut(s) 1711
BstV1I GCAGC 7 cut(s) 54, 203, 319, 322, 427, 649, 1385
BstV2I GAAGAC 6 cut(s) 26, 251, 627, 885, 1560, 1617
BstX2I RGATCY 1 cut(s) 1225
BstYI RGATCY 1 cut(s) 1225
Bsu15I ATCGAT 2 cut(s) 1278, 1748
BsuI GTATCC 1 cut(s) 1564
BsuRI GGCC 1 cut(s) 1781
BsuTUI ATCGAT 2 cut(s) 1278, 1748
BtgI CCRYGG 2 cut(s) 46, 1709
BtsCI GGATG 3 cut(s) 206, 349, 1238
BtsIMutI CAGTG 5 cut(s) 202, 420, 426, 1068, 1731
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 1682, 1779
Cfr42I CCGCGG 1 cut(s) 1712
ClaI ATCGAT 2 cut(s) 1278, 1748
Csp6I GTAC 2 cut(s) 512, 1411
CviAII CATG 4 cut(s) 478, 911, 1550, 1558
CviQI GTAC 2 cut(s) 512, 1411
DdeI CTNAG 9 cut(s) 234, 300, 738, 844, 1027, 1261, 1389, 1615, 1621
DpnI GATC 3 cut(s) 211, 384, 1227
DpnII GATC 3 cut(s) 209, 382, 1225
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 801
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 1 cut(s) 1682
Eco57I CTGAAG 4 cut(s) 552, 630, 1068, 1092
EcoNI CCTNNNNNAGG 1 cut(s) 1083
EcoT14I CCWWGG 1 cut(s) 801
EcoT22I ATGCAT 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 801
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 4 cut(s) 481, 914, 1553, 1561
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 278
FatI CATG 4 cut(s) 477, 910, 1549, 1557
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 7 cut(s) 43, 217, 308, 311, 441, 663, 1374
FokI GGATG 3 cut(s) 213, 356, 1225
Fsp4HI GCNGC 7 cut(s) 43, 217, 308, 311, 441, 663, 1374
FspBI CTAG 4 cut(s) 353, 605, 1206, 1629
GluI GCNGC 7 cut(s) 43, 217, 308, 311, 441, 663, 1374
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 1 cut(s) 1781
HapII CCGG 5 cut(s) 1016, 1229, 1408, 1645, 1813
Hin1II CATG 4 cut(s) 481, 914, 1553, 1561
HindIII AAGCTT 3 cut(s) 564, 905, 1515
HinfI GANTC 9 cut(s) 162, 556, 1108, 1535, 1613, 1619, 1625, 1720, 1745
HpaII CCGG 5 cut(s) 1016, 1229, 1408, 1645, 1813
HphI GGTGA 7 cut(s) 157, 359, 545, 714, 872, 1189, 1500
Hpy166II GTNNAC 5 cut(s) 86, 350, 777, 1057, 1547
Hpy188III TCNNGA 6 cut(s) 191, 386, 478, 1229, 1316, 1717
Hpy8I GTNNAC 5 cut(s) 86, 350, 777, 1057, 1547
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 6 cut(s) 267, 306, 552, 605, 851, 1089
HpyCH4III ACNGT 7 cut(s) 113, 146, 169, 197, 987, 1047, 1160
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 6 cut(s) 522, 755, 914, 937, 1003, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 316, 370, 934
HpyF3I CTNAG 9 cut(s) 234, 300, 738, 844, 1027, 1261, 1389, 1615, 1621
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 4 cut(s) 481, 914, 1553, 1561
Kpn2I TCCGGA 1 cut(s) 1228
KpnI GGTACC 1 cut(s) 1414
KspI CCGCGG 1 cut(s) 1712
Kzo9I GATC 3 cut(s) 209, 382, 1225
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 2 cut(s) 304, 437
Lsp1109I GCAGC 7 cut(s) 54, 203, 319, 322, 427, 649, 1385
LweI GCATC 5 cut(s) 63, 346, 924, 1032, 1247
MaeI CTAG 4 cut(s) 353, 605, 1206, 1629
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 5 cut(s) 107, 835, 1352, 1649, 1760
MalI GATC 3 cut(s) 211, 384, 1227
MbiI CCGCTC 1 cut(s) 1066
MboI GATC 3 cut(s) 209, 382, 1225
MflI RGATCY 1 cut(s) 1225
MluCI AATT 3 cut(s) 498, 974, 1164
MlyI GAGTC 4 cut(s) 156, 1607, 1613, 1619
MmeI TCCRAC 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 524
MroI TCCGGA 1 cut(s) 1228
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 4 cut(s) 171, 749, 792, 1677
MspA1I CMGCKG 1 cut(s) 1711
MspI CCGG 5 cut(s) 1016, 1229, 1408, 1645, 1813
MvnI CGCG 1 cut(s) 1711
MwoI GCNNNNNNNGC 4 cut(s) 51, 316, 370, 934
NdeII GATC 3 cut(s) 209, 382, 1225
NlaIII CATG 4 cut(s) 481, 914, 1553, 1561
NlaIV GGNNCC 5 cut(s) 471, 1227, 1412, 1422, 1780
NmeAIII GCCGAG 2 cut(s) 390, 1807
NmuCI GTSAC 1 cut(s) 1649
NsiI ATGCAT 1 cut(s) 524
NspV TTCGAA 2 cut(s) 899, 1428
PagI TCATGA 1 cut(s) 477
PciSI GCTCTTC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 5 cut(s) 556, 1108, 1535, 1720, 1745
PkrI GCNGC 7 cut(s) 44, 218, 309, 312, 442, 664, 1375
PleI GAGTC 4 cut(s) 156, 1607, 1613, 1619
PpsI GAGTC 4 cut(s) 156, 1607, 1613, 1619
PspN4I GGNNCC 5 cut(s) 471, 1227, 1412, 1422, 1780
PspPI GGNCC 2 cut(s) 1682, 1779
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 1225
RsaI GTAC 2 cut(s) 513, 1412
RsaNI GTAC 2 cut(s) 512, 1411
SacII CCGCGG 1 cut(s) 1712
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 4 cut(s) 171, 749, 792, 1677
SatI GCNGC 7 cut(s) 43, 217, 308, 311, 441, 663, 1374
Sau3AI GATC 3 cut(s) 209, 382, 1225
Sau96I GGNCC 2 cut(s) 1682, 1779
SchI GAGTC 4 cut(s) 156, 1607, 1613, 1619
SfaNI GCATC 5 cut(s) 63, 346, 924, 1032, 1247
Sfr303I CCGCGG 1 cut(s) 1712
SfuI TTCGAA 2 cut(s) 899, 1428
SgrBI CCGCGG 1 cut(s) 1712
SinI GGWCC 1 cut(s) 1682
SmlI CTYRAG 2 cut(s) 1316, 1512
SmoI CTYRAG 2 cut(s) 1316, 1512
Sse9I AATT 3 cut(s) 498, 974, 1164
SsiI CCGC 9 cut(s) 60, 105, 127, 271, 509, 922, 1064, 1709, 1711
SspMI CTAG 4 cut(s) 353, 605, 1206, 1629
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 7 cut(s) 113, 146, 169, 197, 987, 1047, 1160
TaiI ACGT 1 cut(s) 705
TaqI TCGA 9 cut(s) 8, 899, 950, 1278, 1428, 1687, 1693, 1743, 1748
TasI AATT 3 cut(s) 498, 974, 1164
TfiI GAWTC 5 cut(s) 556, 1108, 1535, 1720, 1745
Tru1I TTAA 4 cut(s) 171, 749, 792, 1677
Tru9I TTAA 4 cut(s) 171, 749, 792, 1677
TscAI CASTG 5 cut(s) 202, 420, 426, 1075, 1731
TseFI GTSAC 1 cut(s) 1649
TseI GCWGC 7 cut(s) 42, 216, 307, 310, 440, 662, 1373
Tsp45I GTSAC 1 cut(s) 1649
TspGWI ACGGA 2 cut(s) 1374, 1456
TspRI CASTG 5 cut(s) 202, 420, 426, 1075, 1731
VpaK11BI GGWCC 1 cut(s) 1682
XagI CCTNNNNNAGG 1 cut(s) 1083
XmiI GTMKAC 1 cut(s) 1056
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 4 cut(s) 353, 605, 1206, 1629
Zsp2I ATGCAT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.