Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Forward (+)

22146596 .. 22149417

Gene Structure 2822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGCAAAGGTTCTTAGAAGGTACCTTGGAATGTAAGAAACCAGGGGAGTCTTTAGAGAATCCAAATGCTTCTAAGGACACATGCAGCCATACACATCTTGGAGTTTCAAGCTCAGCCACGAAAGAATCATGTTCCAATAACAATGAAGAGAAGGGTGGGGAAGAAAAGATTTTGCATTTCTTATCAGATCAAGTTGATAATTCTGTTCGTGGTTGCTCTGAAAGTGGGGAATTTCCTGACATTCAATTTCCAAAAGCTTCTGTTAAAAAGGTTTTACAAGCCAAAAGAAAGCTATTGGTTGAAGGATCAGAAGATCTCTTATATTCGAGCAATATTGCATTCCAAATAGCGGCTACTATAAGGAAGTCGTTACCAGGTGAGAAGGATGCCCACCAGGGAAGATTGTTGACGAATATTACAGATGAAAAGGGGCCATCTCCGAAACTTATTGCTGAAAAGCTAGAGAGTTCCTTGAATCAGTTGGCAAAAACATCTGGTCTGTTAGTCAGGGCTTGCAATGGACATTTAAATTTTTATTCTGCCACAAAACAAGCTTCCTCATATCAAAGTGCTCAAACTGTTAGCGTTGCTAAAGGATCTGCTACCAGGTCTGAAAGTAAAGGGTGCAGTGTGAAAAATATCTCTCAATATAATCCGGTAAAGAGGCGGAGGCTTGAGATTCATCTGAAAAGGTCCAGTTTTGATTCAGAAGAGTACGCTTTGTATAGACGGTATCAAATAGCGGTGCATAATGATACCCCTGAACATGTTACAGAAAGCTCATACAGGAGGTTCCTGGTTGATACTCCCTTAAATTATGTTCCTCCAAAAGGTGATGGTACCGTTCCACCTTGTGGCTTTGGTTCTTTCCATCAGCAATATGTGATTGATGGCAAGCTTGTTGCAGTTGGTGTTATAGATATCCTCCCTAGATGTTTGTCAAGTAAATACTTATTTTGGGACCCAGATTTTGCCTTCCTATCACCTGGAAAGTATTCAGCACTACAAGAAATAAATTGGGTGAAAGAAAATCAAGCCCATTGCTCCACGCTTCAGTATTATTATCTCGGTTATTACATTCACTCTTGCAGTAAGATGAGATACAAAGCAGCATATTGCCCGTCTGAGCTACTCTGTCCTTTACGTTACCAGTGGGTTCCTTTTGATGTCGCCAAACCTTTGCTTGATAAAAACCAGTATGCTGTTCTATCTGATGTTTCCATCCCACAAGATAGCTTGCAACCTCATGTTTCTGAAGAAGTCATGAAAGTGCAACATGATGACAGTGGGAAAGAAGACACTAATGATTTTCCTATGTACGACGATGAAGGAGCGTTTGACTCTGAATATGAAAGCTCAGACAACGAACAAAATCTGTTATCTGCTGATGTAGAATATGGAGATGTTGGTAACGTTTTAATCGGGTTGAAGGGATCTCGTGTGAGATTCAAGGATATAATATATATGAGAGTTGTAGTAAATTTATCAGAGTTGCCCAAATGCACAATTAAGCTTGGATTTACCCATTTTATATTTTATGTAATATCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

518

Amino Acids

57.99

Weight (kDa)

6.1

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	20, 839
AccB1I	GGYRCC	2 cut(s)	20, 839
AccB7I	CCANNNNNTGG	1 cut(s)	854
AciI	CCGC	3 cut(s)	350, 667, 743
AclI	AACGTT	1 cut(s)	1413
AclWI	GGATC	3 cut(s)	313, 604, 1441
AcsI	RAATTY	3 cut(s)	230, 529, 1480
AcuI	CTGAAG	2 cut(s)	1037, 1275
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	4 cut(s)	22, 716, 841, 1319
AfiI	CCNNNNNNNGG	3 cut(s)	349, 830, 854
AflIII	ACRYGT	1 cut(s)	766
AgsI	TTSAA	6 cut(s)	108, 245, 302, 475, 1429, 1450
AjnI	CCWGG	6 cut(s)	40, 373, 393, 605, 795, 985
Alw21I	GWGCWC	1 cut(s)	574
AlwI	GGATC	3 cut(s)	313, 604, 1441
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	2 cut(s)	84, 1109
ApoI	RAATTY	3 cut(s)	230, 529, 1480
ArsI	GACNNNNNNTTYG	2 cut(s)	953, 985
Asp700I	GAANNNNTTC	1 cut(s)	994
Asp718I	GGTACC	2 cut(s)	20, 839
AspS9I	GGNCC	3 cut(s)	431, 693, 961
AsuHPI	GGTGA	4 cut(s)	389, 845, 975, 1033
AvaII	GGWCC	2 cut(s)	693, 961
BanI	GGYRCC	2 cut(s)	20, 839
BauI	CACGAG	1 cut(s)	1437
BbsI	GAAGAC	1 cut(s)	1302
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	2 cut(s)	96, 1121
BccI	CCATC	5 cut(s)	442, 830, 879, 884, 1229
BciT130I	CCWGG	6 cut(s)	42, 375, 395, 607, 797, 987
BfaI	CTAG	2 cut(s)	461, 930
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	3 cut(s)	85, 351, 1110
BlpI	GCTNAGC	1 cut(s)	112
BlsI	GCNGC	3 cut(s)	86, 352, 1111
Bme1390I	CCNGG	6 cut(s)	42, 375, 395, 607, 797, 987
Bme18I	GGWCC	2 cut(s)	693, 961
BmgT120I	GGNCC	3 cut(s)	431, 693, 961
BmiI	GGNNCC	7 cut(s)	22, 432, 794, 841, 962, 963, 1158
BmrFI	CCNGG	6 cut(s)	42, 375, 395, 607, 797, 987
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	1302
Bpu1102I	GCTNAGC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	695
BsaJI	CCNNGG	3 cut(s)	24, 41, 394
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 830, 854
Bse1I	ACTGG	3 cut(s)	696, 1150, 1195
Bse3DI	GCAATG	2 cut(s)	523, 1039
BseBI	CCWGG	6 cut(s)	42, 375, 395, 607, 797, 987
BseDI	CCNNGG	3 cut(s)	24, 41, 394
BseGI	GGATG	2 cut(s)	391, 1221
BseLI	CCNNNNNNNGG	3 cut(s)	349, 830, 854
BseMI	GCAATG	2 cut(s)	523, 1039
BseMII	CTCAG	3 cut(s)	126, 1116, 1371
BseNI	ACTGG	3 cut(s)	696, 1150, 1195
BseXI	GCAGC	2 cut(s)	96, 1121
BsgI	GTGCAG	1 cut(s)	646
BshFI	GGCC	1 cut(s)	433
BshNI	GGYRCC	2 cut(s)	20, 839
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	656
BslFI	GGGAC	1 cut(s)	974
BslI	CCNNNNNNNGG	3 cut(s)	349, 830, 854
BsmFI	GGGAC	1 cut(s)	974
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp143I	GATC	5 cut(s)	187, 305, 313, 596, 1433
Bsp1720I	GCTNAGC	1 cut(s)	112
BspACI	CCGC	3 cut(s)	350, 667, 743
BspANI	GGCC	1 cut(s)	433
BspCNI	CTCAG	3 cut(s)	125, 1117, 1370
BspHI	TCATGA	1 cut(s)	1263
BspLI	GGNNCC	7 cut(s)	22, 432, 794, 841, 962, 963, 1158
BspPI	GGATC	3 cut(s)	313, 604, 1441
BspT107I	GGYRCC	2 cut(s)	20, 839
BsrDI	GCAATG	2 cut(s)	523, 1039
BsrI	ACTGG	3 cut(s)	696, 1150, 1195
BssECI	CCNNGG	3 cut(s)	24, 41, 394
BssMI	GATC	5 cut(s)	187, 305, 313, 596, 1433
BssSI	CACGAG	1 cut(s)	1437
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	1437
Bst2UI	CCWGG	6 cut(s)	42, 375, 395, 607, 797, 987
Bst4CI	ACNGT	4 cut(s)	580, 732, 844, 1286
Bst6I	CTCTTC	2 cut(s)	141, 705
BstC8I	GCNNGC	3 cut(s)	514, 896, 1238
BstDEI	CTNAG	5 cut(s)	13, 72, 112, 1125, 1357
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstF5I	GGATG	2 cut(s)	391, 1221
BstKTI	GATC	5 cut(s)	190, 308, 316, 599, 1436
BstMBI	GATC	5 cut(s)	187, 305, 313, 596, 1433
BstNI	CCWGG	6 cut(s)	42, 375, 395, 607, 797, 987
BstNSI	RCATGY	2 cut(s)	84, 770
BstSCI	CCNGG	6 cut(s)	40, 373, 393, 605, 795, 985
BstV1I	GCAGC	2 cut(s)	96, 1121
BstV2I	GAAGAC	1 cut(s)	1302
BstX2I	RGATCY	3 cut(s)	313, 596, 1433
BstYI	RGATCY	3 cut(s)	313, 596, 1433
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	391, 1221
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	3 cut(s)	634, 1157, 1291
Cac8I	GCNNGC	3 cut(s)	514, 896, 1238
CciI	TCATGA	1 cut(s)	1263
Cfr13I	GGNCC	3 cut(s)	431, 693, 961
CsiI	ACCWGGT	2 cut(s)	373, 605
Csp6I	GTAC	4 cut(s)	21, 715, 840, 1318
CviAII	CATG	6 cut(s)	81, 129, 767, 1247, 1264, 1277
CviQI	GTAC	4 cut(s)	21, 715, 840, 1318
DdeI	CTNAG	5 cut(s)	13, 72, 112, 1125, 1357
DpnI	GATC	5 cut(s)	189, 307, 315, 598, 1435
DpnII	GATC	5 cut(s)	187, 305, 313, 596, 1433
DraI	TTTAAA	1 cut(s)	528
DraIII	CACNNNGTG	1 cut(s)	854
Eam1104I	CTCTTC	2 cut(s)	141, 705
EarI	CTCTTC	2 cut(s)	141, 705
EciI	GGCGGA	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	922
Eco47I	GGWCC	2 cut(s)	693, 961
Eco57I	CTGAAG	2 cut(s)	1037, 1275
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	961
EcoRII	CCWGG	6 cut(s)	40, 373, 393, 605, 795, 985
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	6 cut(s)	84, 132, 770, 1250, 1267, 1280
FaqI	GGGAC	1 cut(s)	974
FatI	CATG	6 cut(s)	80, 128, 766, 1246, 1263, 1276
Fnu4HI	GCNGC	3 cut(s)	85, 351, 1110
FokI	GGATG	2 cut(s)	398, 1208
Fsp4HI	GCNGC	3 cut(s)	85, 351, 1110
FspBI	CTAG	2 cut(s)	461, 930
GluI	GCNGC	3 cut(s)	85, 351, 1110
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	1 cut(s)	656
Hin1II	CATG	6 cut(s)	84, 132, 770, 1250, 1267, 1280
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HindIII	AAGCTT	4 cut(s)	255, 552, 896, 1511
HinfI	GANTC	8 cut(s)	47, 58, 125, 475, 679, 704, 1340, 1446
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	4 cut(s)	389, 845, 975, 1033
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	236, 1264
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	1325
HpyAV	CCTTC	7 cut(s)	11, 145, 296, 376, 985, 1322, 1423
HpyCH4III	ACNGT	4 cut(s)	580, 732, 844, 1286
HpyCH4IV	ACGT	2 cut(s)	1144, 1413
HpyF3I	CTNAG	5 cut(s)	13, 72, 112, 1125, 1357
HpySE526I	ACGT	2 cut(s)	1144, 1413
Hsp92II	CATG	6 cut(s)	84, 132, 770, 1250, 1267, 1280
KflI	GGGWCCC	1 cut(s)	961
KpnI	GGTACC	2 cut(s)	24, 843
Kzo9I	GATC	5 cut(s)	187, 305, 313, 596, 1433
LmnI	GCTCC	2 cut(s)	1049, 1331
Lsp1109I	GCAGC	2 cut(s)	96, 1121
LweI	GCATC	1 cut(s)	376
MabI	ACCWGGT	2 cut(s)	373, 605
MaeI	CTAG	2 cut(s)	461, 930
MaeII	ACGT	2 cut(s)	1144, 1413
MaeIII	GTNAC	4 cut(s)	369, 769, 1145, 1409
MalI	GATC	5 cut(s)	189, 307, 315, 598, 1435
MboI	GATC	5 cut(s)	187, 305, 313, 596, 1433
MboII	GAAGA	7 cut(s)	158, 173, 323, 411, 722, 1268, 1307
MflI	RGATCY	3 cut(s)	313, 596, 1433
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	8 cut(s)	199, 230, 245, 529, 814, 1015, 1480, 1506
MlyI	GAGTC	2 cut(s)	56, 1334
MnlI	CCTC	7 cut(s)	568, 657, 663, 783, 834, 935, 1254
MroXI	GAANNNNTTC	1 cut(s)	994
MseI	TTAA	5 cut(s)	264, 527, 812, 1418, 1509
MslI	CAYNNNNRTG	1 cut(s)	1268
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	6 cut(s)	42, 375, 395, 607, 797, 987
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	6 cut(s)	42, 375, 395, 607, 797, 987
NdeII	GATC	5 cut(s)	187, 305, 313, 596, 1433
NlaIII	CATG	6 cut(s)	84, 132, 770, 1250, 1267, 1280
NlaIV	GGNNCC	7 cut(s)	22, 432, 794, 841, 962, 963, 1158
NspI	RCATGY	2 cut(s)	84, 770
PagI	TCATGA	1 cut(s)	1263
PciI	ACATGT	1 cut(s)	766
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	994
PfeI	GAWTC	6 cut(s)	58, 125, 475, 679, 704, 1446
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	3 cut(s)	86, 352, 1111
PleI	GAGTC	2 cut(s)	55, 1334
PpsI	GAGTC	2 cut(s)	55, 1334
PpuMI	RGGWCCY	1 cut(s)	961
PscI	ACATGT	1 cut(s)	766
Psp1406I	AACGTT	1 cut(s)	1413
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	6 cut(s)	40, 373, 393, 605, 795, 985
PspGI	CCWGG	6 cut(s)	40, 373, 393, 605, 795, 985
PspN4I	GGNNCC	7 cut(s)	22, 432, 794, 841, 962, 963, 1158
PspPI	GGNCC	3 cut(s)	431, 693, 961
PspPPI	RGGWCCY	1 cut(s)	961
PsuI	RGATCY	3 cut(s)	313, 596, 1433
RsaI	GTAC	4 cut(s)	22, 716, 841, 1319
RsaNI	GTAC	4 cut(s)	21, 715, 840, 1318
RseI	CAYNNNNRTG	1 cut(s)	1268
SaqAI	TTAA	5 cut(s)	264, 527, 812, 1418, 1509
SatI	GCNGC	3 cut(s)	85, 351, 1110
Sau3AI	GATC	5 cut(s)	187, 305, 313, 596, 1433
Sau96I	GGNCC	3 cut(s)	431, 693, 961
SchI	GAGTC	2 cut(s)	56, 1334
ScrFI	CCNGG	6 cut(s)	42, 375, 395, 607, 797, 987
SduI	GDGCHC	1 cut(s)	574
SexAI	ACCWGGT	2 cut(s)	373, 605
SfaNI	GCATC	1 cut(s)	376
SinI	GGWCC	2 cut(s)	693, 961
SmiI	ATTTAAAT	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	1268
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	8 cut(s)	199, 230, 245, 529, 814, 1015, 1480, 1506
SsiI	CCGC	3 cut(s)	350, 667, 743
SspI	AATATT	2 cut(s)	334, 415
SspMI	CTAG	2 cut(s)	461, 930
StyD4I	CCNGG	6 cut(s)	40, 373, 393, 605, 795, 985
StyI	CCWWGG	1 cut(s)	24
SwaI	ATTTAAAT	1 cut(s)	528
TaaI	ACNGT	4 cut(s)	580, 732, 844, 1286
TaiI	ACGT	2 cut(s)	1147, 1416
TaqI	TCGA	1 cut(s)	326
TasI	AATT	8 cut(s)	199, 230, 245, 529, 814, 1015, 1480, 1506
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	6 cut(s)	58, 125, 475, 679, 704, 1446
Tru1I	TTAA	5 cut(s)	264, 527, 812, 1418, 1509
Tru9I	TTAA	5 cut(s)	264, 527, 812, 1418, 1509
TscAI	CASTG	3 cut(s)	634, 1157, 1291
TseI	GCWGC	2 cut(s)	84, 1109
TspDTI	ATGAA	6 cut(s)	159, 438, 671, 1280, 1341, 1365
TspRI	CASTG	3 cut(s)	634, 1157, 1291
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	2 cut(s)	693, 961
XagI	CCTNNNNNAGG	1 cut(s)	828
XapI	RAATTY	3 cut(s)	230, 529, 1480
XceI	RCATGY	2 cut(s)	84, 770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	994
XspI	CTAG	2 cut(s)	461, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.