Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Forward (+)

16350586 .. 16352128

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16910.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGGGAAGTTGAAGAAGAGCGAGGCGAGCAGTAGCAGCAGAAGCAGCGGCGGCGGCGGCAGTAACCACAGAGGGGAAAGCGTGGTGGTGGATTACGGCGAAAACAAAAGCTCCTGCGGCTACTGCAAATCCCCTGCTCGCACCAGTATCGCTCACGGTTTGTGGGCACATAGCATTACGATTGATGACTACCAAGATCTTCTTGACCGGGGTTGGAGGCGATCTGGTTGTTTCCTTTACAAACCTGACATGGAAAGAACATGCTGCCCTGCTTATACTATTCGTCTGAGAGCAGGCGATTTTGTTCCTTCCAAAGAGCAAGCGCGGGTGTCTAGACGAATGCAAAGGTACTTAGATGGTACCTTGGAATGTAAGAAACCAGGGGAGTGTATAGAGAATCCAAATGCCTCTAAGGACACACGCAGCCATACCCATCCCAAAGTTTCAAGCTCAGCTGCGAAAGAATCCTGTTCCAATAACAATGAAGAGAAGGGTGGGGAAGAAAAGATTATGCATTACTTATCAGATCAAGTTGATAATGCCGTTCGTGGTTGCTCTGAAAATGGGGAATTCCCTGACATTCAATTTCCAAAAGCTATTGTTAAAAAGGTTTTACAAGCCAAAAGAAAGCTATTGGTTGAAGGATCCACGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

220

Amino Acids

24.23

Weight (kDa)

8.91

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	362
AccII	CGCG	1 cut(s)	328
AciI	CCGC	7 cut(s)	5, 51, 54, 57, 60, 120, 328
AclWI	GGATC	2 cut(s)	642, 655
AcsI	RAATTY	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	657
AfaI	GTAC	2 cut(s)	353, 364
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	16, 450, 587, 644
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	5 cut(s)	114, 453, 458, 599, 634
AluI	AGCT	5 cut(s)	114, 453, 458, 599, 634
AlwI	GGATC	2 cut(s)	642, 655
ApeKI	GCWGC	5 cut(s)	39, 48, 267, 426, 458
ApoI	RAATTY	1 cut(s)	572
Asp718I	GGTACC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	362
BbrPI	CACGTG	1 cut(s)	654
BbvI	GCAGC	5 cut(s)	51, 60, 254, 438, 445
BccI	CCATC	2 cut(s)	353, 444
BceAI	ACGGC	2 cut(s)	115, 530
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	336
BglII	AGATCT	1 cut(s)	199
BlpI	GCTNAGC	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	212, 384
BmiI	GGNNCC	2 cut(s)	364, 649
BmrFI	CCNGG	2 cut(s)	212, 384
Bpu1102I	GCTNAGC	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	654
BsaJI	CCNNGG	3 cut(s)	211, 366, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	211, 366, 383
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	281, 468
BseNI	ACTGG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	5 cut(s)	51, 60, 254, 438, 445
Bsh1236I	CGCG	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	199, 224, 529, 647
Bsp1720I	GCTNAGC	1 cut(s)	454
BspACI	CCGC	7 cut(s)	5, 51, 54, 57, 60, 120, 328
BspCNI	CTCAG	2 cut(s)	282, 467
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	364, 649
BspPI	GGATC	2 cut(s)	642, 655
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	3 cut(s)	211, 366, 383
BssMI	GATC	4 cut(s)	199, 224, 529, 647
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	2 cut(s)	14, 483
BstBAI	YACGTR	1 cut(s)	654
BstC8I	GCNNGC	4 cut(s)	31, 142, 298, 324
BstDEI	CTNAG	4 cut(s)	290, 355, 414, 454
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	202, 227, 532, 650
BstMBI	GATC	4 cut(s)	199, 224, 529, 647
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 39, 45, 48, 54, 57, 60, 120, 126
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	210, 382
BstSLI	GKGCMC	1 cut(s)	172
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	5 cut(s)	51, 60, 254, 438, 445
BstX2I	RGATCY	2 cut(s)	199, 647
BstYI	RGATCY	2 cut(s)	199, 647
BtsCI	GGATG	1 cut(s)	436
Cac8I	GCNNGC	4 cut(s)	31, 142, 298, 324
CfoI	GCGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	352, 363
CviAII	CATG	2 cut(s)	253, 264
CviJI	RGCY	8 cut(s)	114, 123, 429, 453, 458, 599, 623, 634
CviKI_1	RGCY	8 cut(s)	114, 123, 429, 453, 458, 599, 623, 634
CviQI	GTAC	2 cut(s)	352, 363
DdeI	CTNAG	4 cut(s)	290, 355, 414, 454
DpnI	GATC	4 cut(s)	201, 226, 531, 649
DpnII	GATC	4 cut(s)	199, 224, 529, 647
DraIII	CACNNNGTG	1 cut(s)	657
Eam1104I	CTCTTC	2 cut(s)	14, 483
EarI	CTCTTC	2 cut(s)	14, 483
Eco130I	CCWWGG	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	256, 267
FaiI	YATR	7 cut(s)	174, 254, 265, 279, 395, 432, 515
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	2 cut(s)	252, 263
FauI	CCCGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	423
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	327
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	256, 267
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	400, 467
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	291, 529, 562
Hpy188III	TCNNGA	2 cut(s)	206, 336
HpyAV	CCTTC	3 cut(s)	321, 487, 638
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	3 cut(s)	129, 346, 517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 39, 45, 48, 54, 57, 60, 120, 126
HpyF3I	CTNAG	4 cut(s)	290, 355, 414, 454
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	2 cut(s)	256, 267
HspAI	GCGC	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	366
Kzo9I	GATC	4 cut(s)	199, 224, 529, 647
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	5 cut(s)	51, 60, 254, 438, 445
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	4 cut(s)	201, 226, 531, 649
MboI	GATC	4 cut(s)	199, 224, 529, 647
MboII	GAAGA	5 cut(s)	28, 31, 194, 500, 515
MflI	RGATCY	2 cut(s)	199, 647
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	572, 587
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	19, 68, 213, 421
Mph1103I	ATGCAT	1 cut(s)	519
MseI	TTAA	1 cut(s)	606
MspA1I	CMGCKG	2 cut(s)	51, 458
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	212, 384
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	9 cut(s)	30, 39, 45, 48, 54, 57, 60, 120, 126
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	4 cut(s)	199, 224, 529, 647
NlaIII	CATG	2 cut(s)	256, 267
NlaIV	GGNNCC	2 cut(s)	364, 649
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	400, 467
PmaCI	CACGTG	1 cut(s)	654
PmlI	CACGTG	1 cut(s)	654
Ppu21I	YACGTR	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	382
PspCI	CACGTG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	364, 649
PsuI	RGATCY	2 cut(s)	199, 647
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	353, 364
RsaNI	GTAC	2 cut(s)	352, 363
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	606
Sau3AI	GATC	4 cut(s)	199, 224, 529, 647
ScrFI	CCNGG	2 cut(s)	212, 384
SduI	GDGCHC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	572, 587
SsiI	CCGC	7 cut(s)	5, 51, 54, 57, 60, 120, 328
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	210, 382
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	1 cut(s)	656
TasI	AATT	2 cut(s)	572, 587
TauI	GCSGC	5 cut(s)	54, 57, 60, 63, 123
TfiI	GAWTC	2 cut(s)	400, 467
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TseI	GCWGC	5 cut(s)	39, 48, 267, 426, 458
TspDTI	ATGAA	1 cut(s)	501
XapI	RAATTY	1 cut(s)	572
XbaI	TCTAGA	1 cut(s)	335
XceI	RCATGY	1 cut(s)	267
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.