AT5G05700

Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1712670 .. 1715731
3062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05700.2

Sequence Viewer

Length: 1899 bp
ATGTCTTTGAAAAACGATGCGAGTAGTAGCCACGACGGTGGAAGCAACAGAGAAAGCGTAATCGATGATCATGGCCGCCGTAAAAGCACTTGCGGCTACTGTAAATCCCCAGCTCGGTCCAGTATCTCTCACGGTTTATCAGCACAGACTCTTACCGTTTATGACTACCAAGCTCTTATTGACCGAGGCTGGAGAAGATCTGGTACTTATCTTTACAAACATGAGATGGATAAAACGTGTTGCCCTCCTTATACGATACGTTTGAAAGCAAGTGATTTTGTTCCTACTAAAGAGCAGCAGCGAGTTTCTAGAAGACTAGAAAGGTTCTTGGATGGCAAACTAGATGTGCAGCCCAGGGAACAAAGAGGTGCTTCTTCCTCTGGTGATGTTTCAGATACAAGGAGAAAAACACTTGGAGCTGCTAAAAGTGAAGAGAATAAGAAAGTTGAAGCAGTTATGGATGATTTGTCTAAAAATATTGACCAAGCTGTGCAATTATGCATACGGAGTGGGGAATTCCCGTCTAATATGCAGATACCAAAAGCTTCAGTGAAGAAGGTTTTCTGTGCTAGAAGAAAGAAACTAGCTGAAGGAACAGAACAAATCTTATACACCAGCAACATTGCTTTTCCAATAGCAGCTGCAATAAAACGCATCCAGACATCTGAGAAAGAGGGGATAAATAGTGCAGAAGGAAATAGATTATCACCTGAAACTATTTCTGAGATGTTGTTGAGTGCAATGCATAAGGTGGGGGAAACTCCTGATGTGTCTATCAAAGTCTGTAAGGGCCATATCAATTTCCTTTCATCTGCCAAAGATTCTTTTTCTGATAGAGATGTTGTACCTAATGGTAACATCTCGAGAGGAGCCAATTCTTTAGATGGAAGTGAAACCCTTCACGCTAAGAAGGATTCAGAAAACCATCAGGCAAGAAAGCGAAAGCTGGAGATACATTTGAAAAGGTCTAGTTTTGATCCTGAAGAACATGAGTTATACAAACGGTATCAGCTGAAAGTGCACAATGATAAGCCAGGGCACGTTGTAGAAAGTTCATACAGAAGGTTTTTGGTCGACTCTCCTTTAATAGATGTTCAACCTTCAGGTGATGAAAAGGTTCCGCCTTGTGGCTTCGGCTCTTTCCACCAACAATATAGAATTGATGGCCGCCTAATTGCCGTCGGGGTTGTAGACATTCTTCCTAAATGTTTGTCAAGTGTATACTTATTCTGGGATCCAGACTATGCATTCTTATCGCTCGGAAAATATTCTGCCATTCAAGAAATTAATTGGGTTATAGAGAACCAAGCTCGCTGCCCTTCTCTTCAGTATTACTATCTTGGTTATTATATACATTCCTGCAGCAAGATGAGATATAAAGCAGCCTATCGTCCATCTGAGCTTCTATGTCCTCTCCGTTTCCAGTGGGTTCCATTTGAAGTAGCAAGGCCGATGCTTGATAAAAAGCCATATGTCATATTGTCCGATATTGCTATTTCACATAATCAATGTTCTTTACTAGCTGGTGCTTCTGAAACTCTCGTGGAACCAGCAGCAAGTGAACATGAAGACATGGAACAAGGGGAGACGAATGATAACTTTATGGGCTGCAGTGATGAGGATGAAGATGAGGATGAGGATGATGATGATGATGATGATGATGATGAGGAAATGTATGAGACTGAATCAGAGGACTCTCATATTGAGTCAGACCCTGGATCCAAAGATAACGACATTAACAACATCCTTATCGGTCTTTATGGATCCCAATATAGATACAAGGAAATGCGGCAGATCATAACTCCCGTAGGCAGGAAGCAACTGGAACCGATGTTACAAAGCTACCGCAAGGTTGTGGGCGCTGAGCTTTCAGAGAGAATGGTGTATGAAATCAACTGA

Protein Analysis

632

Amino Acids

71.54

Weight (kDa)

5.58

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATE_C PF04377 253 - 395 8e-46 Arginine-tRNA-protein transferase, C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 1074, 1191, 1221
AciI CCGC 6 cut(s) 76, 93, 1121, 1168, 1789, 1846
AclWI GGATC 7 cut(s) 971, 1229, 1242, 1713, 1726, 1758, 1771
AcoI YGGCCR 2 cut(s) 73, 1165
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 5 cut(s) 531, 609, 1002, 1086, 1310
AfaI GTAC 2 cut(s) 205, 846
AfiI CCNNNNNNNGG 3 cut(s) 114, 1127, 1812
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 7 cut(s) 10, 265, 449, 961, 1097, 1280, 1439
AjnI CCWGG 3 cut(s) 353, 1033, 1714
AleI CACNNNNGTG 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 2 cut(s) 1580, 1673
Alw44I GTGCAC 1 cut(s) 1019
AlwI GGATC 7 cut(s) 971, 1229, 1242, 1713, 1726, 1758, 1771
AlwNI CAGNNNCTG 1 cut(s) 1715
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 4 cut(s) 73, 790, 1165, 1448
ApaLI GTGCAC 1 cut(s) 1019
ApoI RAATTY 1 cut(s) 515
AseI ATTAAT 1 cut(s) 1287
Asp700I GAANNNNTTC 4 cut(s) 560, 897, 1116, 1267
AspLEI GCGC 1 cut(s) 1862
AspS9I GGNCC 2 cut(s) 117, 790
AsuHPI GGTGA 3 cut(s) 395, 699, 1118
AvaI CYCGRG 1 cut(s) 862
AvaII GGWCC 1 cut(s) 117
BaeGI GKGCMC 2 cut(s) 1023, 1041
BamHI GGATCC 3 cut(s) 1234, 1718, 1763
BarI GAAGNNNNNNTAC 4 cut(s) 187, 219, 1182, 1214
BauI CACGAG 1 cut(s) 1541
BbsI GAAGAC 2 cut(s) 319, 1575
Bbv12I GWGCWC 1 cut(s) 1023
BccI CCATC 6 cut(s) 220, 326, 878, 933, 1157, 1402
BceAI ACGGC 2 cut(s) 63, 1163
BcgI CGANNNNNNTGC 2 cut(s) 1236, 1270
BciT130I CCWGG 3 cut(s) 355, 1035, 1716
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 2 cut(s) 1580, 1673
BfaI CTAG 7 cut(s) 309, 317, 341, 570, 584, 969, 1520
BfmI CTRYAG 2 cut(s) 1360, 1609
BfoI RGCGCY 1 cut(s) 1863
BglII AGATCT 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 1863
Bme1390I CCNGG 3 cut(s) 355, 1035, 1716
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 862
BmgT120I GGNCC 2 cut(s) 117, 790
BmiI GGNNCC 8 cut(s) 871, 1119, 1236, 1431, 1548, 1720, 1765, 1827
BmrFI CCNGG 3 cut(s) 355, 1035, 1716
BmsI GCATC 3 cut(s) 7, 663, 1443
BpiI GAAGAC 2 cut(s) 319, 1575
BpmI CTGGAG 2 cut(s) 211, 968
Bpu1102I GCTNAGC 1 cut(s) 1863
Bsa29I ATCGAT 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 184, 353, 354, 1034, 1714
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 1127, 1812
Bse1I ACTGG 3 cut(s) 120, 1423, 1827
Bse3DI GCAATG 2 cut(s) 621, 747
BseBI CCWGG 3 cut(s) 355, 1035, 1716
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 5 cut(s) 184, 353, 354, 1034, 1714
BseGI GGATG 7 cut(s) 337, 466, 654, 1627, 1639, 1645, 1743
BseLI CCNNNNNNNGG 3 cut(s) 114, 1127, 1812
BseMI GCAATG 2 cut(s) 621, 747
BseMII CTCAG 4 cut(s) 657, 714, 1389, 1854
BseNI ACTGG 3 cut(s) 120, 1423, 1827
BseRI GAGGAG 1 cut(s) 882
BseSI GKGCMC 2 cut(s) 1023, 1041
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 2 cut(s) 368, 708
BshFI GGCC 4 cut(s) 75, 792, 1167, 1450
BshVI ATCGAT 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 1023
BsiHKCI CYCGRG 1 cut(s) 862
BslI CCNNNNNNNGG 3 cut(s) 114, 1127, 1812
BsmAI GTCTC 2 cut(s) 1580, 1673
BsmBI CGTCTC 1 cut(s) 1580
BsmI GAATGC 1 cut(s) 1247
BsnI GGCC 4 cut(s) 75, 792, 1167, 1450
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 2 cut(s) 1023, 1041
Bsp143I GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
Bsp1720I GCTNAGC 1 cut(s) 1863
BspACI CCGC 6 cut(s) 76, 93, 1121, 1168, 1789, 1846
BspANI GGCC 4 cut(s) 75, 792, 1167, 1450
BspCNI CTCAG 4 cut(s) 658, 715, 1390, 1855
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 8 cut(s) 871, 1119, 1236, 1431, 1548, 1720, 1765, 1827
BspMAI CTGCAG 2 cut(s) 1364, 1613
BspPI GGATC 7 cut(s) 971, 1229, 1242, 1713, 1726, 1758, 1771
BsrDI GCAATG 2 cut(s) 621, 747
BsrI ACTGG 3 cut(s) 120, 1423, 1827
BssECI CCNNGG 5 cut(s) 184, 353, 354, 1034, 1714
BssMI GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
BssNAI GTATAC 1 cut(s) 1222
BssSI CACGAG 1 cut(s) 1541
Bst1107I GTATAC 1 cut(s) 1222
Bst2BI CACGAG 1 cut(s) 1541
Bst2UI CCWGG 3 cut(s) 355, 1035, 1716
Bst4CI ACNGT 5 cut(s) 38, 101, 134, 157, 1005
Bst6I CTCTTC 2 cut(s) 426, 1329
BstC8I GCNNGC 1 cut(s) 1312
BstDEI CTNAG 5 cut(s) 666, 723, 906, 1398, 1863
BstF5I GGATG 7 cut(s) 337, 466, 654, 1627, 1639, 1645, 1743
BstH2I RGCGCY 1 cut(s) 1863
BstHHI GCGC 1 cut(s) 1862
BstKTI GATC 7 cut(s) 70, 200, 979, 1237, 1721, 1766, 1797
BstMAI GTCTC 2 cut(s) 1580, 1673
BstMBI GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
BstMWI GCNNNNNNNGC 3 cut(s) 84, 93, 1018
BstNI CCWGG 3 cut(s) 355, 1035, 1716
BstSCI CCNGG 3 cut(s) 353, 1033, 1714
BstSFI CTRYAG 2 cut(s) 1360, 1609
BstSLI GKGCMC 2 cut(s) 1023, 1041
BstV2I GAAGAC 2 cut(s) 319, 1575
BstX2I RGATCY 4 cut(s) 197, 1234, 1718, 1763
BstXI CCANNNNNNTGG 1 cut(s) 38
BstYI RGATCY 4 cut(s) 197, 1234, 1718, 1763
BstZ17I GTATAC 1 cut(s) 1222
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 4 cut(s) 75, 792, 1167, 1450
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 7 cut(s) 337, 466, 654, 1627, 1639, 1645, 1743
BtsI GCAGTG 1 cut(s) 1618
BtsIMutI CAGTG 3 cut(s) 555, 1430, 1618
Cac8I GCNNGC 1 cut(s) 1312
CaiI CAGNNNCTG 1 cut(s) 1715
CfoI GCGC 1 cut(s) 1862
Cfr13I GGNCC 2 cut(s) 117, 790
ClaI ATCGAT 1 cut(s) 63
Csp6I GTAC 2 cut(s) 204, 845
CviAII CATG 5 cut(s) 71, 221, 989, 1565, 1573
CviQI GTAC 2 cut(s) 204, 845
DdeI CTNAG 5 cut(s) 666, 723, 906, 1398, 1863
DpnI GATC 7 cut(s) 69, 199, 978, 1236, 1720, 1765, 1796
DpnII GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
EaeI YGGCCR 2 cut(s) 73, 1165
Eam1104I CTCTTC 2 cut(s) 426, 1329
EarI CTCTTC 2 cut(s) 426, 1329
EciI GGCGGA 1 cut(s) 1110
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 5 cut(s) 531, 609, 1002, 1086, 1310
Eco88I CYCGRG 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 353, 1033, 1714
EcoT22I ATGCAT 3 cut(s) 503, 747, 1249
Esp3I CGTCTC 1 cut(s) 1580
FaeI CATG 5 cut(s) 74, 224, 992, 1568, 1576
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FatI CATG 5 cut(s) 70, 220, 988, 1564, 1572
FauNDI CATATG 1 cut(s) 1471
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 3 cut(s) 1074, 1191, 1221
FokI GGATG 7 cut(s) 344, 473, 641, 1634, 1646, 1652, 1730
FspBI CTAG 7 cut(s) 309, 317, 341, 570, 584, 969, 1520
GlaI GCGC 1 cut(s) 1861
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 2 cut(s) 211, 968
HaeII RGCGCY 1 cut(s) 1863
HaeIII GGCC 4 cut(s) 75, 792, 1167, 1450
HhaI GCGC 1 cut(s) 1862
Hin1II CATG 5 cut(s) 74, 224, 992, 1568, 1576
Hin6I GCGC 1 cut(s) 1860
HinP1I GCGC 1 cut(s) 1860
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 7 cut(s) 148, 821, 914, 1076, 1685, 1694, 1706
HphI GGTGA 3 cut(s) 395, 699, 1118
Hpy166II GTNNAC 5 cut(s) 1021, 1075, 1192, 1222, 1562
Hpy188III TCNNGA 8 cut(s) 309, 658, 764, 862, 864, 980, 1238, 1280
Hpy8I GTNNAC 5 cut(s) 1021, 1075, 1192, 1222, 1562
Hpy99I CGWCG 2 cut(s) 38, 1184
HpyAV CCTTC 8 cut(s) 550, 584, 686, 904, 908, 1056, 1110, 1329
HpyCH4III ACNGT 5 cut(s) 38, 101, 134, 157, 1005
HpyCH4IV ACGT 3 cut(s) 236, 259, 1041
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 93, 1018
HpyF3I CTNAG 5 cut(s) 666, 723, 906, 1398, 1863
HpySE526I ACGT 3 cut(s) 236, 259, 1041
Hsp92II CATG 5 cut(s) 74, 224, 992, 1568, 1576
HspAI GCGC 1 cut(s) 1860
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
LmnI GCTCC 2 cut(s) 416, 869
LweI GCATC 3 cut(s) 7, 663, 1443
MaeI CTAG 7 cut(s) 309, 317, 341, 570, 584, 969, 1520
MaeII ACGT 3 cut(s) 236, 259, 1041
MaeIII GTNAC 2 cut(s) 854, 1833
MalI GATC 7 cut(s) 69, 199, 978, 1236, 1720, 1765, 1796
MboI GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
MflI RGATCY 4 cut(s) 197, 1234, 1718, 1763
MhlI GDGCHC 2 cut(s) 1023, 1041
MluCI AATT 8 cut(s) 494, 515, 799, 874, 1158, 1173, 1284, 1288
MlyI GAGTC 4 cut(s) 142, 1070, 1688, 1715
Mph1103I ATGCAT 3 cut(s) 503, 747, 1249
MroXI GAANNNNTTC 4 cut(s) 560, 897, 1116, 1267
MseI TTAA 3 cut(s) 1085, 1287, 1737
MslI CAYNNNNRTG 1 cut(s) 36
MspA1I CMGCKG 2 cut(s) 641, 1012
MspR9I CCNGG 3 cut(s) 355, 1035, 1716
Mva1269I GAATGC 1 cut(s) 1247
MvaI CCWGG 3 cut(s) 355, 1035, 1716
MwoI GCNNNNNNNGC 3 cut(s) 84, 93, 1018
NdeI CATATG 1 cut(s) 1471
NdeII GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
NlaIII CATG 5 cut(s) 74, 224, 992, 1568, 1576
NlaIV GGNNCC 8 cut(s) 871, 1119, 1236, 1431, 1548, 1720, 1765, 1827
NsiI ATGCAT 3 cut(s) 503, 747, 1249
OliI CACNNNNGTG 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 862
PasI CCCWGGG 1 cut(s) 354
PctI GAATGC 1 cut(s) 1247
PdmI GAANNNNTTC 4 cut(s) 560, 897, 1116, 1267
PfeI GAWTC 3 cut(s) 821, 914, 1685
PleI GAGTC 4 cut(s) 142, 1070, 1688, 1714
PpsI GAGTC 4 cut(s) 142, 1070, 1688, 1714
PshBI ATTAAT 1 cut(s) 1287
Psp6I CCWGG 3 cut(s) 353, 1033, 1714
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 3 cut(s) 353, 1033, 1714
PspN4I GGNNCC 8 cut(s) 871, 1119, 1236, 1431, 1548, 1720, 1765, 1827
PspPI GGNCC 2 cut(s) 117, 790
PsrI GAACNNNNNNTAC 2 cut(s) 1818, 1850
PstI CTGCAG 2 cut(s) 1364, 1613
PstNI CAGNNNCTG 1 cut(s) 1715
PsuI RGATCY 4 cut(s) 197, 1234, 1718, 1763
PvuII CAGCTG 2 cut(s) 641, 1012
RsaI GTAC 2 cut(s) 205, 846
RsaNI GTAC 2 cut(s) 204, 845
RseI CAYNNNNRTG 1 cut(s) 36
SalI GTCGAC 1 cut(s) 1073
SaqAI TTAA 3 cut(s) 1085, 1287, 1737
Sau3AI GATC 7 cut(s) 67, 197, 976, 1234, 1718, 1763, 1794
Sau96I GGNCC 2 cut(s) 117, 790
SchI GAGTC 4 cut(s) 142, 1070, 1688, 1715
ScrFI CCNGG 3 cut(s) 355, 1035, 1716
SduI GDGCHC 2 cut(s) 1023, 1041
SfaNI GCATC 3 cut(s) 7, 663, 1443
SfcI CTRYAG 2 cut(s) 1360, 1609
Sfr274I CTCGAG 1 cut(s) 862
SinI GGWCC 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 862
SmiMI CAYNNNNRTG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 8 cut(s) 494, 515, 799, 874, 1158, 1173, 1284, 1288
SsiI CCGC 6 cut(s) 76, 93, 1121, 1168, 1789, 1846
SspI AATATT 2 cut(s) 478, 1268
SspMI CTAG 7 cut(s) 309, 317, 341, 570, 584, 969, 1520
StyD4I CCNGG 3 cut(s) 353, 1033, 1714
TaaI ACNGT 5 cut(s) 38, 101, 134, 157, 1005
TaiI ACGT 3 cut(s) 239, 262, 1044
TaqI TCGA 3 cut(s) 63, 863, 1074
TaqII GACCGA 3 cut(s) 105, 198, 1742
TasI AATT 8 cut(s) 494, 515, 799, 874, 1158, 1173, 1284, 1288
TauI GCSGC 4 cut(s) 78, 96, 1170, 1792
TfiI GAWTC 3 cut(s) 821, 914, 1685
Tru1I TTAA 3 cut(s) 1085, 1287, 1737
Tru9I TTAA 3 cut(s) 1085, 1287, 1737
TscAI CASTG 3 cut(s) 555, 1430, 1618
TspDTI ATGAA 5 cut(s) 798, 1044, 1125, 1581, 1638
TspGWI ACGGA 2 cut(s) 520, 1406
TspRI CASTG 3 cut(s) 555, 1430, 1618
VneI GTGCAC 1 cut(s) 1019
VpaK11BI GGWCC 1 cut(s) 117
VspI ATTAAT 1 cut(s) 1287
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 862
XmiI GTMKAC 3 cut(s) 1074, 1191, 1221
XmnI GAANNNNTTC 4 cut(s) 560, 897, 1116, 1267
XspI CTAG 7 cut(s) 309, 317, 341, 570, 584, 969, 1520
Zsp2I ATGCAT 3 cut(s) 503, 747, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.