Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Forward (+)

16352227 .. 16353739

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCATATTACAGATGAAAAAGGGCCATCTCCAAAACTTATTGCTGAAAAGCTAGAGTGTTACTTGAATCAGTTGGCAAAAACATCTGGTCTGTTAGTCAGGGCTTGCAACGGACATTTAAATTTTTATTCTGCCACAAAACAAGCTTCCTTATACGAAAGTGCTCAAACTGTTAACATTTCTAAAGGATCTGCTGCCGGGTCTGAAAGTAAAGGGTGCGGTGTGACACATAGCTCTCAAAATGCTCCGGTAAAGAGGTGTAGGCTTGAGATTCATTTGAGAAGGTCCAGTTTTGATTCAGAAGAGTATGCTTTATATAGACGGTATCAAATAGCGGTGCATAATGATACCCCTGAGCATGTTACTGAAAGCTCGTATAAGAGGTTCCTGGTTGATACTCCCTTAAATTATGTGCCTCCAAAAGGTGATGGAACAGTTCCACCTTGTGGCTTTGGTTCTTTCCATCAGCAATATGTTGTTGATGGCAAGCTTATTGCAGTTGGTGTTATAGATATCCTCCCTAGATGTTTGTCGAGTAAATACTTATTTTGGGACCCAGATTTTGCCTTCCTATCACCTGGAAAGTATTCAGCACTACAAGAAATAAATTGGGTGAAAGAAAATCAAGCCCATTGCTCTACTCTCCAGTATTATTATCTCGGTTATTACATTCACTCTTGCAGTAAGATGAGATACAAAGCAGCATATTGCCCATCTGAGTTACTCTGTCCGCTCCGTTACCAGTGGATTCCTTTTCATATTGCCAAGCCTTTGCTTGATAAAAAGCGGTATGCTGTTCTGTCGGATGTTTCCGTCTCACAAGATAGAGAGTCCTTGCCACCTCATGTTTCTGAAGAAGTCATGGAAGTGCAACATGATGACATTGGGAAAGAAGACACTAATGATTTTCCTATGTATGATGATGAAGGAGCAATTGACTTTGCATATGAAAGCTCAGACAACGAACAAAATCTGGTATCTGTTGATGTGGAAGATGGAAATATCGGTAACATTTTAATCGGGTTGAATGGATCTCGTGTGAGATTCAAGGTATGTATACTCAAGCGATGTAAAGTTCGCTTTTGGTTCTTCAGAAAGGAGTTACTTGGAGTTCCAGCTGCACCGTTATATGAGAGTTGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

382

Amino Acids

43.18

Weight (kDa)

6.46

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	1057
AciI	CCGC	4 cut(s)	219, 335, 731, 787
AclWI	GGATC	2 cut(s)	196, 1039
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	873, 1075
AdeI	CACNNNGTG	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	422, 446
AgsI	TTSAA	3 cut(s)	67, 1027, 1048
AjnI	CCWGG	2 cut(s)	387, 577
AluBI	AGCT	7 cut(s)	52, 146, 234, 372, 490, 954, 1118
AluI	AGCT	7 cut(s)	52, 146, 234, 372, 490, 954, 1118
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	2 cut(s)	196, 1039
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	194, 701, 1118
ApoI	RAATTY	1 cut(s)	121
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp700I	GAANNNNTTC	1 cut(s)	586
AspS9I	GGNCC	3 cut(s)	23, 285, 553
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	3 cut(s)	437, 567, 625
AvaII	GGWCC	2 cut(s)	285, 553
BauI	CACGAG	1 cut(s)	1035
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	181, 713, 1105
BccI	CCATC	6 cut(s)	34, 422, 471, 476, 721, 989
BciT130I	CCWGG	2 cut(s)	389, 579
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	2 cut(s)	53, 522
BisI	GCNGC	3 cut(s)	195, 702, 1119
BlsI	GCNGC	3 cut(s)	196, 703, 1120
Bme1390I	CCNGG	3 cut(s)	199, 389, 579
Bme18I	GGWCC	2 cut(s)	285, 553
BmgT120I	GGNCC	3 cut(s)	23, 285, 553
BmiI	GGNNCC	3 cut(s)	386, 554, 555
BmrFI	CCNGG	3 cut(s)	199, 389, 579
BpiI	GAAGAC	1 cut(s)	900
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	287, 1046
BpuMI	CCSGG	1 cut(s)	199
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 446
Bse1I	ACTGG	3 cut(s)	288, 646, 742
Bse3DI	GCAATG	1 cut(s)	631
BseBI	CCWGG	2 cut(s)	389, 579
BseGI	GGATG	1 cut(s)	811
BseLI	CCNNNNNNNGG	2 cut(s)	422, 446
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	345, 708, 969
BseNI	ACTGG	3 cut(s)	288, 646, 742
BseXI	GCAGC	3 cut(s)	181, 713, 1105
BsgI	GTGCAG	1 cut(s)	1104
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	198, 248
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	422, 446
BsmAI	GTCTC	1 cut(s)	820
BsmBI	CGTCTC	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	188, 1031
BspACI	CCGC	4 cut(s)	219, 335, 731, 787
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	3 cut(s)	346, 709, 968
BspLI	GGNNCC	3 cut(s)	386, 554, 555
BspPI	GGATC	2 cut(s)	196, 1039
BsrBI	CCGCTC	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	288, 646, 742
BssMI	GATC	2 cut(s)	188, 1031
BssNAI	GTATAC	1 cut(s)	1058
BssSI	CACGAG	1 cut(s)	1035
Bst1107I	GTATAC	1 cut(s)	1058
Bst2BI	CACGAG	1 cut(s)	1035
Bst2UI	CCWGG	2 cut(s)	389, 579
Bst4CI	ACNGT	4 cut(s)	172, 324, 436, 1125
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	106, 488
BstDEI	CTNAG	3 cut(s)	354, 717, 955
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstF5I	GGATG	1 cut(s)	811
BstKTI	GATC	2 cut(s)	191, 1034
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	2 cut(s)	188, 1031
BstNI	CCWGG	2 cut(s)	389, 579
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	197, 387, 577
BstV1I	GCAGC	3 cut(s)	181, 713, 1105
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	2 cut(s)	188, 1031
BstYI	RGATCY	2 cut(s)	188, 1031
BstZ17I	GTATAC	1 cut(s)	1058
BsuRI	GGCC	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	1081
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	1 cut(s)	749
Cac8I	GCNNGC	2 cut(s)	106, 488
Cfr13I	GGNCC	3 cut(s)	23, 285, 553
CviAII	CATG	4 cut(s)	359, 845, 862, 875
DdeI	CTNAG	3 cut(s)	354, 717, 955
DpnI	GATC	2 cut(s)	190, 1033
DpnII	GATC	2 cut(s)	188, 1031
DraI	TTTAAA	1 cut(s)	120
DraIII	CACNNNGTG	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	285, 553
Eco57I	CTGAAG	2 cut(s)	873, 1075
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	387, 577
EcoRV	GATATC	1 cut(s)	514
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	820
FaeI	CATG	4 cut(s)	362, 848, 865, 878
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	4 cut(s)	358, 844, 861, 874
FauNDI	CATATG	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	1057
Fnu4HI	GCNGC	3 cut(s)	195, 702, 1119
FokI	GGATG	1 cut(s)	818
Fsp4HI	GCNGC	3 cut(s)	195, 702, 1119
FspBI	CTAG	2 cut(s)	53, 522
GluI	GCNGC	3 cut(s)	195, 702, 1119
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	198, 248
Hin1II	CATG	4 cut(s)	362, 848, 865, 878
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	2 cut(s)	144, 488
HinfI	GANTC	6 cut(s)	67, 271, 296, 748, 830, 1044
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	198, 248
HphI	GGTGA	3 cut(s)	437, 567, 625
Hpy166II	GTNNAC	2 cut(s)	175, 1058
Hpy188I	TCNGA	7 cut(s)	205, 301, 718, 805, 853, 958, 1094
Hpy8I	GTNNAC	2 cut(s)	175, 1058
HpyAV	CCTTC	3 cut(s)	276, 577, 920
HpyCH4III	ACNGT	4 cut(s)	172, 324, 436, 1125
HpyCH4V	TGCA	8 cut(s)	4, 108, 340, 497, 681, 871, 944, 1121
HpyF3I	CTNAG	3 cut(s)	354, 717, 955
Hsp92II	CATG	4 cut(s)	362, 848, 865, 878
KflI	GGGWCCC	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	188, 1031
LmnI	GCTCC	3 cut(s)	250, 738, 929
Lsp1109I	GCAGC	3 cut(s)	181, 713, 1105
MaeI	CTAG	2 cut(s)	53, 522
MaeIII	GTNAC	7 cut(s)	59, 223, 361, 720, 737, 1007, 1101
MalI	GATC	2 cut(s)	190, 1033
MbiI	CCGCTC	1 cut(s)	733
MboI	GATC	2 cut(s)	188, 1031
MboII	GAAGA	5 cut(s)	314, 866, 905, 1004, 1081
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	2 cut(s)	188, 1031
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	4 cut(s)	121, 406, 607, 933
MlyI	GAGTC	1 cut(s)	839
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	5 cut(s)	249, 375, 426, 527, 852
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	4 cut(s)	119, 174, 404, 1016
MslI	CAYNNNNRTG	1 cut(s)	866
MspA1I	CMGCKG	1 cut(s)	1118
MspI	CCGG	2 cut(s)	198, 248
MspR9I	CCNGG	3 cut(s)	199, 389, 579
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	389, 579
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	946
NdeII	GATC	2 cut(s)	188, 1031
NlaIII	CATG	4 cut(s)	362, 848, 865, 878
NlaIV	GGNNCC	3 cut(s)	386, 554, 555
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	5 cut(s)	67, 271, 296, 748, 1044
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	196, 703, 1120
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	387, 577
PspGI	CCWGG	2 cut(s)	387, 577
PspN4I	GGNNCC	3 cut(s)	386, 554, 555
PspPI	GGNCC	3 cut(s)	23, 285, 553
PspPPI	RGGWCCY	1 cut(s)	553
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PsuI	RGATCY	2 cut(s)	188, 1031
PvuII	CAGCTG	1 cut(s)	1118
RseI	CAYNNNNRTG	1 cut(s)	866
SaqAI	TTAA	4 cut(s)	119, 174, 404, 1016
SatI	GCNGC	3 cut(s)	195, 702, 1119
Sau3AI	GATC	2 cut(s)	188, 1031
Sau96I	GGNCC	3 cut(s)	23, 285, 553
SchI	GAGTC	1 cut(s)	839
ScrFI	CCNGG	3 cut(s)	199, 389, 579
SduI	GDGCHC	1 cut(s)	166
SinI	GGWCC	2 cut(s)	285, 553
SmiI	ATTTAAAT	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	866
SmlI	CTYRAG	2 cut(s)	266, 1061
SmoI	CTYRAG	2 cut(s)	266, 1061
Sse9I	AATT	4 cut(s)	121, 406, 607, 933
SsiI	CCGC	4 cut(s)	219, 335, 731, 787
SspMI	CTAG	2 cut(s)	53, 522
StyD4I	CCNGG	3 cut(s)	197, 387, 577
SwaI	ATTTAAAT	1 cut(s)	120
TaaI	ACNGT	4 cut(s)	172, 324, 436, 1125
TaqI	TCGA	1 cut(s)	533
TasI	AATT	4 cut(s)	121, 406, 607, 933
TfiI	GAWTC	5 cut(s)	67, 271, 296, 748, 1044
Tru1I	TTAA	4 cut(s)	119, 174, 404, 1016
Tru9I	TTAA	4 cut(s)	119, 174, 404, 1016
TscAI	CASTG	1 cut(s)	749
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	194, 701, 1118
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	5 cut(s)	30, 263, 746, 939, 963
TspGWI	ACGGA	3 cut(s)	126, 725, 802
TspRI	CASTG	1 cut(s)	749
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	285, 553
XagI	CCTNNNNNAGG	1 cut(s)	420
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	1057
XmnI	GAANNNNTTC	1 cut(s)	586
XspI	CTAG	2 cut(s)	53, 522
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.