Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315937.1

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 820

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315937.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggtgcataatgatacccctgcccatgttgcagaaggctcatataggaggttcttagttgatactcccttaatatatattcccccaactaatgatggtacagttcccccatgtggctttggctctttccatcagcaatatgtaattgatggcaaacttgttgcagttggtgttatagacattcttcctaaatgcttgtccagtaaatatttattctgggatccagactttgcgttcctatcactagggaagtattcagcactgcaagaaataaattgggtgaaagagaatcaactccattgccccactcttcaatattattatcttggttactacatccactcctgcagtaagatgagatataaggcagcgtatcgcccgtccgagctactgtgccctcttcgttaccggtgggttccttttgatatttccaagcctttgcttgatagagacaagtatgctgttttatcagattgtaccatctctcaagatagggactcctcatcactcgatgtttctgaagatgtcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

177

Amino Acids

20.33

Weight (kDa)

5.91

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	215, 228
AfaI	GTAC	2 cut(s)	100, 478
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	314
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	215, 228
ApeKI	GCWGC	1 cut(s)	368
AsiGI	ACCGGT	1 cut(s)	408
AsuHPI	GGTGA	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	4 cut(s)	89, 138, 143, 488
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	346
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	222, 417
BpuEI	CTTGAG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	490
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	380
BshTI	ACCGGT	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	222, 417
BspMAI	CTGCAG	1 cut(s)	350
BspPI	GGATC	2 cut(s)	215, 228
BsrDI	GCAATG	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	408
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	103, 393
Bst6I	CTCTTC	2 cut(s)	315, 405
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	346
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	336
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
Cfr10I	RCCGGY	1 cut(s)	408
Csp6I	GTAC	2 cut(s)	99, 477
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	3 cut(s)	26, 111, 529
CviJI	RGCY	5 cut(s)	39, 117, 123, 388, 436
CviKI_1	RGCY	5 cut(s)	39, 117, 123, 388, 436
CviQI	GTAC	2 cut(s)	99, 477
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	315, 405
EarI	CTCTTC	2 cut(s)	315, 405
FaeI	CATG	2 cut(s)	29, 114
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	2 cut(s)	25, 110
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	245
GluI	GCNGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	2 cut(s)	29, 114
HinfI	GANTC	2 cut(s)	289, 497
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	385, 472, 520
Hpy188III	TCNNGA	2 cut(s)	224, 488
HpyAV	CCTTC	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	103, 393
HpyCH4V	TGCA	5 cut(s)	7, 32, 164, 265, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	29, 114
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	6 cut(s)	33, 202, 214, 237, 358, 422
Lsp1109I	GCAGC	1 cut(s)	380
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	329, 404
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	176, 302, 392
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	2 cut(s)	144, 274
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	3 cut(s)	42, 408, 511
MseI	TTAA	1 cut(s)	71
MspI	CCGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	29, 114
NlaIV	GGNNCC	2 cut(s)	222, 417
PfeI	GAWTC	1 cut(s)	289
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	222, 417
PstI	CTGCAG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	100, 478
RsaNI	GTAC	2 cut(s)	99, 477
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	2 cut(s)	53, 390
SfcI	CTRYAG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	2 cut(s)	144, 274
SspI	AATATT	2 cut(s)	209, 317
SspMI	CTAG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	103, 393
TaqI	TCGA	1 cut(s)	510
TasI	AATT	2 cut(s)	144, 274
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	1 cut(s)	368
TspRI	CASTG	1 cut(s)	267
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.