Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Forward (+)

61247131 .. 61250785

Gene Structure 3655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAAAAAACGTGCTGCCCTGCTTATACCATTCGTTTGAAAGCTGCTGATTTTGTTGCTTCGAAAGAGCAGCTTCGGGTGACTAGACGAATGCAGAGGTTTTTAGATGGTGCCTTGGAATGTAAACAGCCAGGGGAGTGTACAGAGGGTCCAAATGCTTCCAAGGATACACGTGGTCAGACCCCCCTTGGAGTTTCAAGCTCAGCTCCCAAAACCAGTGGAGAGAAAGATGGGGAAGAGAAAATTATGAATTACTTGTCAGATCAAGTTGATAAAGCAATTCGTTCATGCTCAGAAAGAGGGGAGCTTCCTGACATTCAATCTCCAAAAGCTTCTGTTAAAAAGGTTTTGCAAGCCAAAAGAAAGCTATTAGCTGAAGGGTCTGAAGATCTCTTATACTCCAGCAATATTGCATTTCAACTAGCGGCTGCTATAAGACGGTGTCTACCAGATAAGAAAGAAGCCCACAAGGGAAGACAATCGGGATATGTTGCAGAGGAAAATGGGTTGTCTCCAAAACTCATTGCTGAAAAACTAGAAAGTTCATTAAATCAGTTGGGGAACACTTCTGGTCTATCAGTTAAGGCTTGCAATGGTCACTTAAATTTTTATTCTGCCACGAAACCTGCTTCCTCACATGAAAGTGCTGAAATTGTTAGCAACTCCAAAGGATCTGCTGCCAGGTCGGAGAGTAAAGGCTGCAGTTTGAAAAATAACTCTGAACATACTCAGGTGAAGAGGCGGAAGCTTGAGATTCATCTTAAAAAGTCCAGTTTTGATTCAGAAGAGTTTGCGTTGTATAGGAGATATCAAATGATGGTGCATAATGATACCCCTGACCATGTTACAGAAGGCTCGTATAGGAGGTTCTTAGTTGATACTCCCTTAATATATGTTCCCCCAACTAATGATGGTACAGTTCCCCCATGTGGCTTTGGCTCTTTCCATCAGCAATATGTAATTGATGGCAAACTTGTTGCAGTTGGTGTTATAGACATTCTCCCTAAATGTTTGTCCAGTAAATATCTTTTCTGGGACCCAGACTTTGCGTTCCTATCACTAGGGAAGTATTCAGCACTGCAAGAAATAAACTGGGTGAAGGAGAATCAAGTCCACTGCCCTACTCTTCAATATTATTATCTTGGTTACTACATCCACTCCTGCAGTAAGATGAGATATAAGGCAGCGTATCGCCCGTCTGAGCTACTGTGTCCTCTTCGTTATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

409

Amino Acids

45.73

Weight (kDa)

8.97

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATE_C	PF04377	262 - 404	4.2e-46	Arginine-tRNA-protein transferase, C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	2 cut(s)	425, 742
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	2 cut(s)	396, 405
AcvI	CACGTG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	142, 916
AfiI	CCNNNNNNNGG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	40, 198, 320, 419, 709, 1130
AjnI	CCWGG	2 cut(s)	130, 680
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	1 cut(s)	679
ApeKI	GCWGC	7 cut(s)	15, 44, 70, 428, 677, 699, 1184
ApoI	RAATTY	1 cut(s)	604
ArsI	GACNNNNNNTTYG	2 cut(s)	1028, 1060
AspS9I	GGNCC	2 cut(s)	149, 1036
AsuHPI	GGTGA	3 cut(s)	91, 745, 1108
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	149, 1036
BanI	GGYRCC	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	481
BbvI	GCAGC	7 cut(s)	2, 31, 82, 415, 664, 686, 1196
BccI	CCATC	6 cut(s)	101, 224, 811, 905, 954, 959
BciT130I	CCWGG	2 cut(s)	132, 682
BciVI	GTATCC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	4 cut(s)	84, 422, 536, 1061
BfmI	CTRYAG	2 cut(s)	700, 1162
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	160
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	8 cut(s)	16, 45, 71, 426, 429, 678, 700, 1185
BlpI	GCTNAGC	1 cut(s)	202
BlsI	GCNGC	8 cut(s)	17, 46, 72, 427, 430, 679, 701, 1186
Bme1390I	CCNGG	2 cut(s)	132, 682
Bme18I	GGWCC	2 cut(s)	149, 1036
BmgT120I	GGNCC	2 cut(s)	149, 1036
BmiI	GGNNCC	4 cut(s)	112, 150, 1037, 1038
BmrFI	CCNGG	2 cut(s)	132, 682
BmrI	ACTGGG	1 cut(s)	1102
BmuI	ACTGGG	1 cut(s)	1102
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	385
Bpu1102I	GCTNAGC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	770
BsaAI	YACGTR	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	114, 131, 162, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	1142, 1172
Bsc4I	CCNNNNNNNGG	1 cut(s)	929
Bse1I	ACTGG	4 cut(s)	216, 771, 1017, 1097
Bse3DI	GCAATG	2 cut(s)	522, 598
BseBI	CCWGG	2 cut(s)	132, 682
BseDI	CCNNGG	4 cut(s)	114, 131, 162, 187
BseGI	GGATG	1 cut(s)	1152
BseLI	CCNNNNNNNGG	1 cut(s)	929
BseMI	GCAATG	2 cut(s)	522, 598
BseMII	CTCAG	4 cut(s)	216, 306, 743, 1191
BseNI	ACTGG	4 cut(s)	216, 771, 1017, 1097
BseXI	GCAGC	7 cut(s)	2, 31, 82, 415, 664, 686, 1196
BshNI	GGYRCC	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	1049
BslI	CCNNNNNNNGG	1 cut(s)	929
BsmAI	GTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	1049
BsmI	GAATGC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	262, 388, 671
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	2 cut(s)	425, 742
BspCNI	CTCAG	4 cut(s)	215, 305, 742, 1192
BspLI	GGNNCC	4 cut(s)	112, 150, 1037, 1038
BspMAI	CTGCAG	2 cut(s)	704, 1166
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	679
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	522, 598
BsrGI	TGTACA	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	216, 771, 1017, 1097
BssECI	CCNNGG	4 cut(s)	114, 131, 162, 187
BssMI	GATC	3 cut(s)	262, 388, 671
BssT1I	CCWWGG	3 cut(s)	114, 162, 187
Bst2UI	CCWGG	2 cut(s)	132, 682
Bst4CI	ACNGT	3 cut(s)	441, 919, 1209
Bst6I	CTCTTC	5 cut(s)	231, 731, 780, 1131, 1221
BstAUI	TGTACA	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	354, 589
BstDEI	CTNAG	5 cut(s)	202, 292, 729, 871, 1200
BstF5I	GGATG	1 cut(s)	1152
BstKTI	GATC	3 cut(s)	265, 391, 674
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	262, 388, 671
BstNI	CCWGG	2 cut(s)	132, 682
BstSCI	CCNGG	2 cut(s)	130, 680
BstSFI	CTRYAG	2 cut(s)	700, 1162
BstV1I	GCAGC	7 cut(s)	2, 31, 82, 415, 664, 686, 1196
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	2 cut(s)	388, 671
BstYI	RGATCY	2 cut(s)	388, 671
BsuI	GTATCC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	1152
BtsI	GCAGTG	2 cut(s)	1076, 1114
BtsIMutI	CAGTG	3 cut(s)	223, 1076, 1114
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	354, 589
Cfr13I	GGNCC	2 cut(s)	149, 1036
Csp6I	GTAC	2 cut(s)	141, 915
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	4 cut(s)	288, 638, 842, 927
CviQI	GTAC	2 cut(s)	141, 915
DdeI	CTNAG	5 cut(s)	202, 292, 729, 871, 1200
DpnI	GATC	3 cut(s)	264, 390, 673
DpnII	GATC	3 cut(s)	262, 388, 671
Eam1104I	CTCTTC	5 cut(s)	231, 731, 780, 1131, 1221
EarI	CTCTTC	5 cut(s)	231, 731, 780, 1131, 1221
EciI	GGCGGA	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	114, 162, 187
Eco32I	GATATC	1 cut(s)	809
Eco47I	GGWCC	2 cut(s)	149, 1036
Eco57I	CTGAAG	2 cut(s)	396, 405
Eco72I	CACGTG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoRII	CCWGG	2 cut(s)	130, 680
EcoRV	GATATC	1 cut(s)	809
EcoT14I	CCWWGG	3 cut(s)	114, 162, 187
ErhI	CCWWGG	3 cut(s)	114, 162, 187
FaeI	CATG	4 cut(s)	291, 641, 845, 930
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	1049
FatI	CATG	4 cut(s)	287, 637, 841, 926
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	8 cut(s)	16, 45, 71, 426, 429, 678, 700, 1185
FokI	GGATG	1 cut(s)	1139
Fsp4HI	GCNGC	8 cut(s)	16, 45, 71, 426, 429, 678, 700, 1185
FspBI	CTAG	4 cut(s)	84, 422, 536, 1061
GluI	GCNGC	8 cut(s)	16, 45, 71, 426, 429, 678, 700, 1185
GsuI	CTGGAG	1 cut(s)	385
Hin1II	CATG	4 cut(s)	291, 641, 845, 930
HindIII	AAGCTT	2 cut(s)	330, 746
HinfI	GANTC	3 cut(s)	754, 779, 1105
HphI	GGTGA	3 cut(s)	91, 745, 1108
Hpy166II	GTNNAC	4 cut(s)	125, 141, 446, 1114
Hpy188I	TCNGA	8 cut(s)	180, 262, 295, 385, 688, 721, 784, 1201
Hpy188III	TCNNGA	2 cut(s)	311, 483
Hpy8I	GTNNAC	4 cut(s)	125, 141, 446, 1114
HpyAV	CCTTC	3 cut(s)	371, 845, 1093
HpyCH4III	ACNGT	3 cut(s)	441, 919, 1209
HpyCH4IV	ACGT	2 cut(s)	11, 172
HpyF3I	CTNAG	5 cut(s)	202, 292, 729, 871, 1200
HpySE526I	ACGT	2 cut(s)	11, 172
Hsp92II	CATG	4 cut(s)	291, 641, 845, 930
KflI	GGGWCCC	1 cut(s)	1036
Kzo9I	GATC	3 cut(s)	262, 388, 671
LmnI	GCTCC	2 cut(s)	211, 304
Lsp1109I	GCAGC	7 cut(s)	2, 31, 82, 415, 664, 686, 1196
MaeI	CTAG	4 cut(s)	84, 422, 536, 1061
MaeII	ACGT	2 cut(s)	11, 172
MaeIII	GTNAC	4 cut(s)	79, 596, 844, 1145
MalI	GATC	3 cut(s)	264, 390, 673
MboI	GATC	3 cut(s)	262, 388, 671
MboII	GAAGA	7 cut(s)	248, 398, 486, 748, 797, 1118, 1208
MflI	RGATCY	2 cut(s)	388, 671
MluCI	AATT	6 cut(s)	243, 250, 279, 604, 651, 960
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	8 cut(s)	90, 139, 293, 490, 643, 732, 858, 1224
MseI	TTAA	6 cut(s)	339, 548, 582, 602, 762, 887
MslI	CAYNNNNRTG	1 cut(s)	642
MspR9I	CCNGG	2 cut(s)	132, 682
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	132, 682
NdeII	GATC	3 cut(s)	262, 388, 671
NlaIII	CATG	4 cut(s)	291, 641, 845, 930
NlaIV	GGNNCC	4 cut(s)	112, 150, 1037, 1038
NmuCI	GTSAC	2 cut(s)	79, 596
NspV	TTCGAA	1 cut(s)	62
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	754, 779, 1105
PflFI	GACNNNGTC	1 cut(s)	441
PkrI	GCNGC	8 cut(s)	17, 46, 72, 427, 430, 679, 701, 1186
PmaCI	CACGTG	1 cut(s)	173
PmlI	CACGTG	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	1036
Psp5II	RGGWCCY	1 cut(s)	1036
Psp6I	CCWGG	2 cut(s)	130, 680
PspCI	CACGTG	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	130, 680
PspN4I	GGNNCC	4 cut(s)	112, 150, 1037, 1038
PspPI	GGNCC	2 cut(s)	149, 1036
PspPPI	RGGWCCY	1 cut(s)	1036
PsrI	GAACNNNNNNTAC	2 cut(s)	851, 883
PstI	CTGCAG	2 cut(s)	704, 1166
PsuI	RGATCY	2 cut(s)	388, 671
PsyI	GACNNNGTC	1 cut(s)	441
RsaI	GTAC	2 cut(s)	142, 916
RsaNI	GTAC	2 cut(s)	141, 915
RseI	CAYNNNNRTG	1 cut(s)	642
SaqAI	TTAA	6 cut(s)	339, 548, 582, 602, 762, 887
SatI	GCNGC	8 cut(s)	16, 45, 71, 426, 429, 678, 700, 1185
Sau3AI	GATC	3 cut(s)	262, 388, 671
Sau96I	GGNCC	2 cut(s)	149, 1036
ScrFI	CCNGG	2 cut(s)	132, 682
SfcI	CTRYAG	2 cut(s)	700, 1162
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	2 cut(s)	149, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	6 cut(s)	243, 250, 279, 604, 651, 960
SsiI	CCGC	2 cut(s)	425, 742
SspI	AATATT	2 cut(s)	409, 1133
SspMI	CTAG	4 cut(s)	84, 422, 536, 1061
StyD4I	CCNGG	2 cut(s)	130, 680
StyI	CCWWGG	3 cut(s)	114, 162, 187
TaaI	ACNGT	3 cut(s)	441, 919, 1209
TaiI	ACGT	2 cut(s)	14, 175
TaqI	TCGA	1 cut(s)	62
TasI	AATT	6 cut(s)	243, 250, 279, 604, 651, 960
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	754, 779, 1105
Tru1I	TTAA	6 cut(s)	339, 548, 582, 602, 762, 887
Tru9I	TTAA	6 cut(s)	339, 548, 582, 602, 762, 887
TscAI	CASTG	3 cut(s)	223, 1083, 1121
TseFI	GTSAC	2 cut(s)	79, 596
TseI	GCWGC	7 cut(s)	15, 44, 70, 428, 677, 699, 1184
Tsp45I	GTSAC	2 cut(s)	79, 596
TspDTI	ATGAA	5 cut(s)	263, 276, 534, 654, 746
TspRI	CASTG	3 cut(s)	223, 1083, 1121
Tth111I	GACNNNGTC	1 cut(s)	441
VpaK11BI	GGWCC	2 cut(s)	149, 1036
XapI	RAATTY	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	4 cut(s)	84, 422, 536, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.