Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Reverse (-)

7858767 .. 7862044

Gene Structure 3278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCTCAGAAAGAGGGAGCTTCCTGACATTCAATCTCCTAAAGCTTCTGTTAAAAAGGTTTTGCAAGCCAAAAGAAAGCTATTAGCTGAAGGGTCTGAAGATCTCTTATACTCCAGCAATATTGCATTTCAACTAGCGGCTGCTATAAGACGGTGTCTACCAGAATATAAGGAATCCCACAAGGGAAGACAATCGGGACACATTGCAGAGGAGAATGGGTTGTCTCCAAAACTCATTGCTGAAAAGCTAGAAAGTTCATTAGATCAGTTAGGGAACACTTCTGGTCTATCAGTAAAGGCTTGCAATGGACACTTAAATTTTTATTCTGCCACGAAACCCGCTCCCTCACATGGAAGTGCTCAAATCGTTAGCAACTCCAACAGAACTGCTTCCAGGTCGGAAAGTAAAGGCTGCAGTTTGAAAAATAATTCTGAATTTACTCAGGTGAAGAGGCGGAGGCTTGAGATTCGTCTTAAAAGGTCCAGTTTTGATTCAGAAGAGTATGCCTTATATAGAAGATATCAAATGATGGTGCATAATGATACCCCTGCCCATGTTGCAGAAGGCTTATATAGGAGGTTCTTAGTTGATACTCCCTTAATATATATTCCCCCAACTAATGATGGTACAGTTCCCCCATGTGGCTTTGGCTCTTTCCATCAGCAATATGTAATTGATGGCAAACTTGTTGCAGTTGGTGTTATAGACATTCTTCCTAAATGTTTGTCCAGTAAATATTTATTCTGGGATCCAGATTTTGCGTTCCTATCACTAGGGAAGTATTCAGCACTGCAAGAAATAAATTGGGTGAAAGAGAATGAACTCCATTGCCCTACTCTTCAATATTATTATCTTGGTTACTACATCCACTCCTGCAGTAAGATGAGATATAAGGCAGCATATCGCCCGTCCGAGCTACTGTGCCCTCTTCGTTACCGGTGGGTTCCTTTTGATATTTCCAAGCCTTTGCTTGATAGAAACAAGTATGCTGTTTTATCAGATTGGACCATCTCCCAAGATAGGGACTCCTCATCACTTGATGTTTCTGAAGATGTCATGGAAATACAACATGATGACATTGGCCAAGATAGTGAGGTTCTTATGTATGATGAAGGGATGATTGAGCCTGAATATGAAGGCTCTGACAATGAACCACATCTGGCATATGTTGATGTAGAAAATGGAGATGCTGGTAACGTTTTAATTGGGTTGAGCGGATCTCGTGTGAGATTCAAGGATATAAAGCAAGCTTTTGGTCCCACAGAACGAAGTTGCTTGGAATCCCAGTTGAGTAGATACACAGAAGTTGTAGGTGAAGAGCTCGCTGAACGAATGGTTTATTCAATTGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

451

Amino Acids

51.14

Weight (kDa)

6.06

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATE_C	PF04377	166 - 308	4.9e-45	Arginine-tRNA-protein transferase, C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	341, 1215
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	4 cut(s)	137, 339, 454, 1215
AclI	AACGTT	1 cut(s)	1197
AclWI	GGATC	3 cut(s)	743, 756, 1225
AcoI	YGGCCR	1 cut(s)	1081
AcsI	RAATTY	2 cut(s)	316, 434
AcuI	CTGAAG	3 cut(s)	108, 117, 1068
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	4 cut(s)	350, 641, 1020, 1021
AgeI	ACCGGT	1 cut(s)	936
AgsI	TTSAA	6 cut(s)	32, 131, 421, 842, 1234, 1344
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	9 cut(s)	19, 44, 79, 86, 247, 916, 1250, 1321, 1351
AluI	AGCT	9 cut(s)	19, 44, 79, 86, 247, 916, 1250, 1321, 1351
Alw21I	GWGCWC	3 cut(s)	361, 1323, 1353
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	743, 756, 1225
AoxI	GGCC	1 cut(s)	1081
ApeKI	GCWGC	3 cut(s)	140, 411, 896
ApoI	RAATTY	2 cut(s)	316, 434
AsiGI	ACCGGT	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	480, 1005, 1256
AsuHPI	GGTGA	3 cut(s)	457, 820, 1325
AvaII	GGWCC	3 cut(s)	480, 1005, 1256
BaeGI	GKGCMC	1 cut(s)	926
BalI	TGGCCA	1 cut(s)	1083
BamHI	GGATCC	1 cut(s)	748
BanII	GRGCYC	2 cut(s)	1323, 1353
BauI	CACGAG	1 cut(s)	1221
BbsI	GAAGAC	1 cut(s)	193
Bbv12I	GWGCWC	3 cut(s)	361, 1323, 1353
BbvI	GCAGC	3 cut(s)	127, 398, 908
BccI	CCATC	5 cut(s)	523, 617, 666, 671, 1016
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	134, 248, 773
BfmI	CTRYAG	2 cut(s)	412, 874
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	4 cut(s)	138, 141, 412, 897
BlsI	GCNGC	4 cut(s)	139, 142, 413, 898
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	3 cut(s)	480, 1005, 1256
BmgT120I	GGNCC	3 cut(s)	480, 1005, 1256
BmiI	GGNNCC	3 cut(s)	750, 945, 1258
BmrFI	CCNGG	1 cut(s)	394
BmrI	ACTGGG	1 cut(s)	1279
BmsI	GCATC	1 cut(s)	1177
BmuI	ACTGGG	1 cut(s)	1279
BpiI	GAAGAC	1 cut(s)	193
BplI	GAGNNNNNCTC	2 cut(s)	1204, 1236
BpmI	CTGGAG	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	482
BsaWI	WCCGGW	1 cut(s)	936
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 854, 884
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 641, 1020, 1021
Bse118I	RCCGGY	1 cut(s)	936
Bse1I	ACTGG	3 cut(s)	483, 729, 1285
Bse3DI	GCAATG	4 cut(s)	201, 234, 310, 826
BseBI	CCWGG	1 cut(s)	394
BseGI	GGATG	2 cut(s)	864, 1122
BseLI	CCNNNNNNNGG	4 cut(s)	350, 641, 1020, 1021
BseMI	GCAATG	4 cut(s)	201, 234, 310, 826
BseMII	CTCAG	2 cut(s)	19, 455
BseNI	ACTGG	3 cut(s)	483, 729, 1285
BseRI	GAGGAG	2 cut(s)	224, 1018
BseSI	GKGCMC	1 cut(s)	926
BseXI	GCAGC	3 cut(s)	127, 398, 908
BshFI	GGCC	1 cut(s)	1083
BshTI	ACCGGT	1 cut(s)	936
BsiHKAI	GWGCWC	3 cut(s)	361, 1323, 1353
BsiSI	CCGG	1 cut(s)	937
BslFI	GGGAC	3 cut(s)	210, 1037, 1242
BslI	CCNNNNNNNGG	4 cut(s)	350, 641, 1020, 1021
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	3 cut(s)	210, 1037, 1242
BsnI	GGCC	1 cut(s)	1083
Bsp1286I	GDGCHC	4 cut(s)	361, 926, 1323, 1353
Bsp143I	GATC	4 cut(s)	100, 262, 748, 1217
BspACI	CCGC	4 cut(s)	137, 339, 454, 1215
BspANI	GGCC	1 cut(s)	1083
BspCNI	CTCAG	2 cut(s)	18, 454
BspLI	GGNNCC	3 cut(s)	750, 945, 1258
BspMAI	CTGCAG	2 cut(s)	416, 878
BspPI	GGATC	3 cut(s)	743, 756, 1225
BspQI	GCTCTTC	1 cut(s)	1311
BsrBI	CCGCTC	2 cut(s)	341, 1215
BsrDI	GCAATG	4 cut(s)	201, 234, 310, 826
BsrFI	RCCGGY	1 cut(s)	936
BsrI	ACTGG	3 cut(s)	483, 729, 1285
BssAI	RCCGGY	1 cut(s)	936
BssMI	GATC	4 cut(s)	100, 262, 748, 1217
BssSI	CACGAG	1 cut(s)	1221
Bst2BI	CACGAG	1 cut(s)	1221
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	3 cut(s)	153, 631, 921
Bst6I	CTCTTC	5 cut(s)	443, 492, 843, 933, 1311
BstC8I	GCNNGC	4 cut(s)	66, 301, 1248, 1323
BstDEI	CTNAG	3 cut(s)	5, 441, 583
BstF5I	GGATG	2 cut(s)	864, 1122
BstKTI	GATC	4 cut(s)	103, 265, 751, 1220
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	4 cut(s)	100, 262, 748, 1217
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	2 cut(s)	412, 874
BstSLI	GKGCMC	1 cut(s)	926
BstV1I	GCAGC	3 cut(s)	127, 398, 908
BstV2I	GAAGAC	1 cut(s)	193
BstX2I	RGATCY	3 cut(s)	100, 748, 1217
BstYI	RGATCY	3 cut(s)	100, 748, 1217
BsuRI	GGCC	1 cut(s)	1083
BtsCI	GGATG	2 cut(s)	864, 1122
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	4 cut(s)	66, 301, 1248, 1323
Cfr10I	RCCGGY	1 cut(s)	936
Cfr13I	GGNCC	3 cut(s)	480, 1005, 1256
Csp6I	GTAC	1 cut(s)	627
CspAI	ACCGGT	1 cut(s)	936
CviAII	CATG	5 cut(s)	350, 554, 639, 1057, 1070
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	3 cut(s)	5, 441, 583
DpnI	GATC	4 cut(s)	102, 264, 750, 1219
DpnII	GATC	4 cut(s)	100, 262, 748, 1217
EaeI	YGGCCR	1 cut(s)	1081
Eam1104I	CTCTTC	5 cut(s)	443, 492, 843, 933, 1311
EarI	CTCTTC	5 cut(s)	443, 492, 843, 933, 1311
EciI	GGCGGA	1 cut(s)	469
Ecl136II	GAGCTC	2 cut(s)	1321, 1351
Eco24I	GRGCYC	2 cut(s)	1323, 1353
Eco32I	GATATC	1 cut(s)	521
Eco47I	GGWCC	3 cut(s)	480, 1005, 1256
Eco53kI	GAGCTC	2 cut(s)	1321, 1351
Eco57I	CTGAAG	3 cut(s)	108, 117, 1068
EcoICRI	GAGCTC	2 cut(s)	1321, 1351
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	521
EcoT38I	GRGCYC	2 cut(s)	1323, 1353
FaeI	CATG	5 cut(s)	353, 557, 642, 1060, 1073
FaqI	GGGAC	3 cut(s)	210, 1037, 1242
FatI	CATG	5 cut(s)	349, 553, 638, 1056, 1069
FauI	CCCGC	1 cut(s)	346
FauNDI	CATATG	1 cut(s)	1165
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	138, 141, 412, 897
FokI	GGATG	2 cut(s)	851, 1129
FriOI	GRGCYC	2 cut(s)	1323, 1353
Fsp4HI	GCNGC	4 cut(s)	138, 141, 412, 897
FspBI	CTAG	3 cut(s)	134, 248, 773
GluI	GCNGC	4 cut(s)	138, 141, 412, 897
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	1083
HapII	CCGG	1 cut(s)	937
Hin1II	CATG	5 cut(s)	353, 557, 642, 1060, 1073
HindIII	AAGCTT	2 cut(s)	42, 1248
HinfI	GANTC	6 cut(s)	173, 466, 491, 1025, 1230, 1280
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	3 cut(s)	457, 820, 1325
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	9 cut(s)	8, 97, 400, 433, 496, 913, 1000, 1048, 1144
Hpy188III	TCNNGA	3 cut(s)	23, 195, 752
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	4 cut(s)	83, 557, 1106, 1130
HpyCH4III	ACNGT	3 cut(s)	153, 631, 921
HpyCH4IV	ACGT	1 cut(s)	1197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	3 cut(s)	5, 441, 583
HpySE526I	ACGT	1 cut(s)	1197
Hsp92II	CATG	5 cut(s)	353, 557, 642, 1060, 1073
Kzo9I	GATC	4 cut(s)	100, 262, 748, 1217
LguI	GCTCTTC	1 cut(s)	1311
LmnI	GCTCC	2 cut(s)	16, 346
Lsp1109I	GCAGC	3 cut(s)	127, 398, 908
LweI	GCATC	1 cut(s)	1177
MaeI	CTAG	3 cut(s)	134, 248, 773
MaeII	ACGT	1 cut(s)	1197
MaeIII	GTNAC	3 cut(s)	857, 932, 1193
MalI	GATC	4 cut(s)	102, 264, 750, 1219
MbiI	CCGCTC	2 cut(s)	341, 1215
MboI	GATC	4 cut(s)	100, 262, 748, 1217
MfeI	CAATTG	1 cut(s)	1344
MflI	RGATCY	3 cut(s)	100, 748, 1217
MhlI	GDGCHC	4 cut(s)	361, 926, 1323, 1353
MlsI	TGGCCA	1 cut(s)	1083
MluCI	AATT	7 cut(s)	316, 427, 434, 672, 802, 1203, 1344
MluNI	TGGCCA	1 cut(s)	1083
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	2 cut(s)	378, 402
MnlI	CCTC	9 cut(s)	6, 202, 355, 444, 450, 570, 936, 1039, 1087
Mox20I	TGGCCA	1 cut(s)	1083
MroXI	GAANNNNTTC	1 cut(s)	388
MscI	TGGCCA	1 cut(s)	1083
MseI	TTAA	5 cut(s)	51, 314, 474, 599, 1202
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	1083
MspI	CCGG	1 cut(s)	937
MspR9I	CCNGG	1 cut(s)	394
MunI	CAATTG	1 cut(s)	1344
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	557
NdeI	CATATG	1 cut(s)	1165
NdeII	GATC	4 cut(s)	100, 262, 748, 1217
NlaIII	CATG	5 cut(s)	353, 557, 642, 1060, 1073
NlaIV	GGNNCC	3 cut(s)	750, 945, 1258
PciSI	GCTCTTC	1 cut(s)	1311
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	5 cut(s)	173, 466, 491, 1230, 1280
PflFI	GACNNNGTC	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	936
PkrI	GCNGC	4 cut(s)	139, 142, 413, 898
PleI	GAGTC	1 cut(s)	1019
PpsI	GAGTC	1 cut(s)	1019
Psp124BI	GAGCTC	2 cut(s)	1323, 1353
Psp1406I	AACGTT	1 cut(s)	1197
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	3 cut(s)	750, 945, 1258
PspPI	GGNCC	3 cut(s)	480, 1005, 1256
PstI	CTGCAG	2 cut(s)	416, 878
PsuI	RGATCY	3 cut(s)	100, 748, 1217
PsyI	GACNNNGTC	1 cut(s)	153
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	2 cut(s)	1323, 1353
SapI	GCTCTTC	1 cut(s)	1311
SaqAI	TTAA	5 cut(s)	51, 314, 474, 599, 1202
SatI	GCNGC	4 cut(s)	138, 141, 412, 897
Sau3AI	GATC	4 cut(s)	100, 262, 748, 1217
Sau96I	GGNCC	3 cut(s)	480, 1005, 1256
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	4 cut(s)	361, 926, 1323, 1353
SfaNI	GCATC	1 cut(s)	1177
SfcI	CTRYAG	2 cut(s)	412, 874
SinI	GGWCC	3 cut(s)	480, 1005, 1256
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	7 cut(s)	316, 427, 434, 672, 802, 1203, 1344
SsiI	CCGC	4 cut(s)	137, 339, 454, 1215
SspI	AATATT	3 cut(s)	121, 737, 845
SspMI	CTAG	3 cut(s)	134, 248, 773
SstI	GAGCTC	2 cut(s)	1323, 1353
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	153, 631, 921
TaiI	ACGT	1 cut(s)	1200
TasI	AATT	7 cut(s)	316, 427, 434, 672, 802, 1203, 1344
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	5 cut(s)	173, 466, 491, 1230, 1280
Tru1I	TTAA	5 cut(s)	51, 314, 474, 599, 1202
Tru9I	TTAA	5 cut(s)	51, 314, 474, 599, 1202
TscAI	CASTG	1 cut(s)	795
TseI	GCWGC	3 cut(s)	140, 411, 896
TspDTI	ATGAA	5 cut(s)	246, 834, 1125, 1149, 1164
TspRI	CASTG	1 cut(s)	795
Tth111I	GACNNNGTC	1 cut(s)	153
VpaK11BI	GGWCC	3 cut(s)	480, 1005, 1256
XapI	RAATTY	2 cut(s)	316, 434
XmiI	GTMKAC	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	3 cut(s)	134, 248, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.