Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025779.1

Orthogroup ID

OG0004965

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1475

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025779.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggcagggaagatgaagaagagcgaggccagcagcagcagccgaagcagcagcaacaacaacaacaacagtaaccacagagccgagaccgtcgtcgtcgattacggcaaaaacagaagcacctgcggctactgcaaatccaaagctcgcaccagcatctctcacggtctgtgggcgcagagcgttacgattaatgactatcaagatcttcttgaccggggttggagaagatctggttgtttcctttacaaacctgagatggaaaaaacgtgctgccctgcttatactattcgtttgaaagctgatgattttgttgcttcgaaagagcagcttcgggtgactagacgaatgcagaggtttttagatggtgccttggaatgtaaacggccaggggagtctacagagggtccaaatgcttccaaggatgcacgtggccagaccccccttggagtttcaagctcagctcccaacaacagtggagagaaagatggggaagagaaaattatgaattacttgtcagatcaagttgataaagcaattcgttcatgctcagaaagaggggagcttcctgacattcaatctcctaaagcttctgttaaaaaggttttgcaagccaaaagaaagctattagctgaagggtctgaagatctcttatactccagcaatattgcatttcaactagcagctgctataagacggtgtctaccagaatataaggaatcccacaagggaagacaatcgggacacattgcagaggagaatgggttgtctccaaaactcattgctgagaagctagaaagttcattaaatcagttggggaacgcttctggtctatcagtaaaggcttgcaatggacacttaaatttttattctgccacgaaacctgctccctcacatggaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004057 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009894 GO:0009987 GO:0010029 GO:0010033 GO:0010150 GO:0016598 GO:0016740 GO:0016746 GO:0016755 GO:0019216 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048580 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0050994 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0065007 GO:0071704 GO:0080090 GO:0090693 GO:0097305 GO:0098542 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATE_C ATE_N

Protein Analysis

301

Amino Acids

32.94

Weight (kDa)

9.25

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT3G11240 AT5G05700 AT5G05700
fragaria_vesca	FvH4_7g24330 FvH4_7g24330 FvH4_7g24330
malus_domestica	MD01G1132500.v1.1 MD07G1220300.v1.1
prunus_persica	Prupe.2G248700_v2.0.a1
pyrus_communis	pycom01g16910 pycom01g16920 pycom07g19930
rosa_chinensis	RchiOBHm_Chr1g0369991
rosa_laevigata	RLG00000027080
rosa_multiflora	Rmu_co8315937.1_g000001 Rmu_sc0005056.1_g000016 Rmu_sc0025779.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286890 Rroxscaffold_4G00287140
rosa_rugosa	Rorug01G0352900 Rorug01G0353000
rosa_samantha	Rh1AG361900 Rh1BG325100 Rh1CG338400 Rh1DG355600
rosa_wichuraiana	Rw1G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	2 cut(s)	131, 892
AccB1I	GGYRCC	1 cut(s)	368
AccI	GTMKAC	2 cut(s)	398, 703
AciI	CCGC	1 cut(s)	126
AcoI	YGGCCR	2 cut(s)	386, 433
AcsI	RAATTY	1 cut(s)	862
AcuI	CTGAAG	2 cut(s)	654, 663
AcvI	CACGTG	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	896
AgsI	TTSAA	4 cut(s)	298, 456, 578, 677
AjnI	CCWGG	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	80, 774
AoxI	GGCC	3 cut(s)	27, 386, 433
ApeKI	GCWGC	9 cut(s)	33, 36, 39, 48, 51, 273, 328, 683, 686
ApoI	RAATTY	1 cut(s)	862
AseI	ATTAAT	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	349
AsuII	TTCGAA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	368
BbrPI	CACGTG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	739
BbvI	GCAGC	9 cut(s)	45, 48, 51, 60, 63, 260, 340, 673, 695
BccI	CCATC	3 cut(s)	253, 359, 482
BceAI	ACGGC	2 cut(s)	121, 401
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	80, 774
BfaI	CTAG	3 cut(s)	342, 680, 794
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	2 cut(s)	131, 892
BglII	AGATCT	3 cut(s)	205, 230, 646
BlpI	GCTNAGC	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	218, 390
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	370, 408
BmrFI	CCNGG	2 cut(s)	218, 390
BmsI	GCATC	2 cut(s)	165, 415
BoxI	GACNNNNGTC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	739
BpmI	CTGGAG	1 cut(s)	643
Bpu1102I	GCTNAGC	1 cut(s)	460
Bpu14I	TTCGAA	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	5 cut(s)	217, 372, 389, 420, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	896
Bse3DI	GCAATG	3 cut(s)	747, 780, 856
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	5 cut(s)	217, 372, 389, 420, 445
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	1 cut(s)	896
BseMI	GCAATG	3 cut(s)	747, 780, 856
BseMII	CTCAG	4 cut(s)	246, 474, 564, 777
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	9 cut(s)	45, 48, 51, 60, 63, 260, 340, 673, 695
BshFI	GGCC	3 cut(s)	29, 388, 435
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	217
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	1 cut(s)	896
BsmAI	GTCTC	2 cut(s)	80, 774
BsmFI	GGGAC	1 cut(s)	756
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	29, 388, 435
Bso31I	GGTCTC	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	320
Bsp143I	GATC	4 cut(s)	205, 230, 520, 646
Bsp1720I	GCTNAGC	1 cut(s)	460
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	3 cut(s)	29, 388, 435
BspCNI	CTCAG	4 cut(s)	247, 473, 563, 778
BspLI	GGNNCC	2 cut(s)	370, 408
BspMI	ACCTGC	2 cut(s)	131, 892
BspQI	GCTCTTC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	3 cut(s)	747, 780, 856
BssECI	CCNNGG	5 cut(s)	217, 372, 389, 420, 445
BssMI	GATC	4 cut(s)	205, 230, 520, 646
BssT1I	CCWWGG	3 cut(s)	372, 420, 445
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	5 cut(s)	71, 91, 167, 476, 699
Bst6I	CTCTTC	2 cut(s)	14, 489
BstBAI	YACGTR	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	31, 148, 612, 847
BstDEI	CTNAG	4 cut(s)	255, 460, 550, 786
BstF5I	GGATG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	208, 233, 523, 649
BstMAI	GTCTC	2 cut(s)	80, 774
BstMBI	GATC	4 cut(s)	205, 230, 520, 646
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 39, 45, 48, 126, 132
BstNI	CCWGG	1 cut(s)	390
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	216, 388
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	9 cut(s)	45, 48, 51, 60, 63, 260, 340, 673, 695
BstV2I	GAAGAC	1 cut(s)	739
BstX2I	RGATCY	3 cut(s)	205, 230, 646
BstYI	RGATCY	3 cut(s)	205, 230, 646
BsuRI	GGCC	3 cut(s)	29, 388, 435
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	2 cut(s)	131, 892
Cac8I	GCNNGC	4 cut(s)	31, 148, 612, 847
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	407
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	2 cut(s)	546, 896
DdeI	CTNAG	4 cut(s)	255, 460, 550, 786
DpnI	GATC	4 cut(s)	207, 232, 522, 648
DpnII	GATC	4 cut(s)	205, 230, 520, 646
EaeI	YGGCCR	2 cut(s)	386, 433
Eam1104I	CTCTTC	2 cut(s)	14, 489
EarI	CTCTTC	2 cut(s)	14, 489
Eco130I	CCWWGG	3 cut(s)	372, 420, 445
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	654, 663
Eco72I	CACGTG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	3 cut(s)	372, 420, 445
ErhI	CCWWGG	3 cut(s)	372, 420, 445
FaeI	CATG	2 cut(s)	549, 899
FaiI	YATR	7 cut(s)	285, 506, 547, 655, 692, 714, 897
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 315, 347
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	2 cut(s)	545, 895
FblI	GTMKAC	2 cut(s)	398, 703
FokI	GGATG	1 cut(s)	437
FspBI	CTAG	3 cut(s)	342, 680, 794
GlaI	GCGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	643
HaeIII	GGCC	3 cut(s)	29, 388, 435
HapII	CCGG	1 cut(s)	217
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	549, 899
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	2 cut(s)	395, 719
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	383, 399, 704
Hpy188I	TCNGA	3 cut(s)	520, 553, 643
Hpy188III	TCNNGA	4 cut(s)	203, 212, 569, 741
Hpy8I	GTNNAC	3 cut(s)	383, 399, 704
Hpy99I	CGWCG	3 cut(s)	95, 98, 101
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	5 cut(s)	71, 91, 167, 476, 699
HpyCH4IV	ACGT	2 cut(s)	269, 430
HpyCH4V	TGCA	7 cut(s)	135, 352, 428, 610, 671, 752, 849
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 39, 45, 48, 126, 132
HpyF3I	CTNAG	4 cut(s)	255, 460, 550, 786
HpySE526I	ACGT	2 cut(s)	269, 430
Hsp92II	CATG	2 cut(s)	549, 899
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	205, 230, 520, 646
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	3 cut(s)	469, 562, 892
Lsp1109I	GCAGC	9 cut(s)	45, 48, 51, 60, 63, 260, 340, 673, 695
LweI	GCATC	2 cut(s)	165, 415
MaeI	CTAG	3 cut(s)	342, 680, 794
MaeII	ACGT	2 cut(s)	269, 430
MaeIII	GTNAC	3 cut(s)	71, 184, 337
MalI	GATC	4 cut(s)	207, 232, 522, 648
MboI	GATC	4 cut(s)	205, 230, 520, 646
MboII	GAAGA	8 cut(s)	22, 28, 31, 200, 240, 506, 656, 744
MflI	RGATCY	3 cut(s)	205, 230, 646
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	4 cut(s)	501, 508, 537, 862
MluNI	TGGCCA	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	19, 348, 397, 551, 748, 901
Mox20I	TGGCCA	1 cut(s)	435
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	4 cut(s)	192, 597, 806, 860
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	218, 390
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	6 cut(s)	30, 39, 45, 48, 126, 132
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	4 cut(s)	205, 230, 520, 646
NlaIII	CATG	2 cut(s)	549, 899
NlaIV	GGNNCC	2 cut(s)	370, 408
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	320
PaqCI	CACCTGC	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	719
PflFI	GACNNNGTC	1 cut(s)	699
PleI	GAGTC	1 cut(s)	403
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	403
Ppu21I	YACGTR	1 cut(s)	431
PshAI	GACNNNNGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	388
PspCI	CACGTG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	370, 408
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	3 cut(s)	205, 230, 646
PsyI	GACNNNGTC	1 cut(s)	699
PvuII	CAGCTG	1 cut(s)	686
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	4 cut(s)	192, 597, 806, 860
Sau3AI	GATC	4 cut(s)	205, 230, 520, 646
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	2 cut(s)	218, 390
SfaNI	GCATC	2 cut(s)	165, 415
SfcI	CTRYAG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	4 cut(s)	501, 508, 537, 862
SsiI	CCGC	1 cut(s)	126
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	3 cut(s)	342, 680, 794
StyD4I	CCNGG	2 cut(s)	216, 388
StyI	CCWWGG	3 cut(s)	372, 420, 445
TaaI	ACNGT	5 cut(s)	71, 91, 167, 476, 699
TaiI	ACGT	2 cut(s)	272, 433
TaqI	TCGA	2 cut(s)	99, 320
TasI	AATT	4 cut(s)	501, 508, 537, 862
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	4 cut(s)	192, 597, 806, 860
Tru9I	TTAA	4 cut(s)	192, 597, 806, 860
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	9 cut(s)	33, 36, 39, 48, 51, 273, 328, 683, 686
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	29, 521, 534, 792
TspRI	CASTG	1 cut(s)	481
Tth111I	GACNNNGTC	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	407
VspI	ATTAAT	1 cut(s)	192
XapI	RAATTY	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	398, 703
XspI	CTAG	3 cut(s)	342, 680, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.