Rw1G031840

Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
60048245 .. 60051716
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G031840.1

Sequence Viewer

Length: 1488 bp
ATGGCAGGGAAGATGAAGAAGAGCGAGGCCAGCAGCAGCAGCCGAAGCAGCAGCAACAACAACAACAACAGTAACCACAGAGCCGAGACCGTCGTCGTCGATTACGGCAAAAACAGAAGCACCTGCGGCTACTGCAAATCCAAAGCTCGCACCAGCATCTCTCACGGTCTGTGGGCGCAGAGCGTTACGATTAATGACTATCAAGATCTTCTTGACCGGGGTTGGAGAAGATCTGGTTGTTTCCTTTACAAACCGGAGATGGAAAAAACGTGCTGCCCTGCTTATACTATTCGCTTGAAAGCTGATGATTTTGTTGCTTCAAAAGAGCAGCTTCGGGTGACTAGACGAATGCAGAGGTTTTTAGATGGTGCCTTGGAATGTAAACGGCCAGGGGAGTCTACAGAGGGTCCAAATGCTTCCAAGGATACACGTGGCCAGACCCCCCTTGGAGTTTCAAGCTCAGCTCCCAACAACAGTGGAGAGAAAGATGGGGAAGAGAAAATTATGAATTACTTGTCAGATCAAGTTGATAAAGCAATTCGTTCATGCTCAGAAAGAGGGGAGCTTCCTGACATTCAATCTCCTAAAGCTTCTGTTAAAAAGGTTTTGCAAGCCAAAAGAAAGCTATTAGCTGAAGGGTCTGAAGATCTCTTATACTCCAGCAATATTGCATTTCAACTAGCAGCTGCTATAAGACGGTGTCTACCAGAATATAAGGAATCCCACAAGGGAAGACAATCGGGACACATTGCAGAGGAGAATGGGTTGTCTCCAAAACTCATTGCTGAGAAGCTAGAAAGTTCATTAAATCAGTTGGGGAACACTTCAGGTCTATCAGTAAAGGCTTGCAATGGACACTTAAATTTTTATTCTGCCACGAAACCTGCTCCCTCACATGGAAGTGCTCAAATCGTTAGCAACTCCAACAGATCTGCTTCCATGTCGGAAAGTAAAGGCTGCAGTTTGAAAAATAACTCTGAATGTACTCAGGTGAAGAGGCGGAGGCTTGAGATTCGTCTTAAAAGGTCCAGTTTTGATTCAGAAGAGTATGCCTTATATAGAAGATATCAAATGATGGTGCATAATGATACCCCTGCCCATGTTGCAGAAGGCTCATATAGGAGGTTCTTAGTTGATACTCCCTTAATTTATATTCCCCCAACTAATGATGGTACAGTTCCCCCATGTGGCTTTGGCTCATTCCATCAGCAATATGTAATTGATGGCAAACTTGTTGCAGTTGGTGTTATAGACATTCTTCCTAAATGCTTGTCCAGTAAATATTTATTCTGGGATCCAGACTTTGCGTTCCTATCACTAGGGAAGTATTCAGCACTGCAAGAAATAAATTGGGTGAAAGAGAATCAACTCCATTGCCCCACTCTTCAATTTTATTATCTTGGTTACTACATCCACTCCTGCAGTAAGATGAGATATAAGGCAGCGTATCGCCCGTCCGAGCTACTGTGCCCTCTTCGTTACCGGTAA

Protein Analysis

495

Amino Acids

55.45

Weight (kDa)

9.23

Isoelectric Point (pI)

55.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATE_N PF04376 40 - 110 1.1e-23 Arginine-tRNA-protein transferase, N terminus
ATE_C PF04377 348 - 490 6.5e-45 Arginine-tRNA-protein transferase, C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 2 cut(s) 131, 892
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 2 cut(s) 398, 703
AciI CCGC 2 cut(s) 126, 1000
AclWI GGATC 2 cut(s) 1289, 1302
AcoI YGGCCR 2 cut(s) 386, 433
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 3 cut(s) 654, 663, 810
AcvI CACGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 985, 1174
AfiI CCNNNNNNNGG 2 cut(s) 896, 1187
AflIII ACRYGT 1 cut(s) 428
AgeI ACCGGT 1 cut(s) 1482
AgsI TTSAA 7 cut(s) 298, 321, 456, 578, 677, 967, 1388
AjnI CCWGG 1 cut(s) 388
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 80, 774
AlwI GGATC 2 cut(s) 1289, 1302
AoxI GGCC 3 cut(s) 27, 386, 433
ApoI RAATTY 1 cut(s) 862
AseI ATTAAT 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 1482
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 2 cut(s) 407, 1026
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 3 cut(s) 349, 1003, 1366
AvaII GGWCC 2 cut(s) 407, 1026
BaeGI GKGCMC 1 cut(s) 1472
BalI TGGCCA 1 cut(s) 435
BamHI GGATCC 1 cut(s) 1294
BanI GGYRCC 1 cut(s) 368
BbrPI CACGTG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 739
Bbv12I GWGCWC 1 cut(s) 907
BccI CCATC 7 cut(s) 253, 359, 482, 1069, 1163, 1212, 1217
BceAI ACGGC 2 cut(s) 121, 401
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 418
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 80, 774
BfaI CTAG 4 cut(s) 342, 680, 794, 1319
BfmI CTRYAG 3 cut(s) 399, 958, 1420
BfuAI ACCTGC 2 cut(s) 131, 892
BfuI GTATCC 1 cut(s) 418
BglII AGATCT 4 cut(s) 205, 230, 646, 929
BlpI GCTNAGC 1 cut(s) 460
Bme1390I CCNGG 2 cut(s) 218, 390
Bme18I GGWCC 2 cut(s) 407, 1026
BmgT120I GGNCC 2 cut(s) 407, 1026
BmiI GGNNCC 3 cut(s) 370, 408, 1296
BmrFI CCNGG 2 cut(s) 218, 390
BmsI GCATC 1 cut(s) 165
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 739
BpmI CTGGAG 1 cut(s) 643
Bpu1102I GCTNAGC 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 1028
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 5 cut(s) 217, 372, 389, 420, 445
BsaWI WCCGGW 2 cut(s) 253, 1482
BsaXI ACNNNNNCTCC 4 cut(s) 749, 779, 1400, 1430
Bsc4I CCNNNNNNNGG 2 cut(s) 896, 1187
Bse118I RCCGGY 1 cut(s) 1482
Bse1I ACTGG 2 cut(s) 1029, 1275
Bse3DI GCAATG 4 cut(s) 747, 780, 856, 1372
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 5 cut(s) 217, 372, 389, 420, 445
BseGI GGATG 1 cut(s) 1410
BseLI CCNNNNNNNGG 2 cut(s) 896, 1187
BseMI GCAATG 4 cut(s) 747, 780, 856, 1372
BseMII CTCAG 4 cut(s) 474, 564, 777, 1001
BseNI ACTGG 2 cut(s) 1029, 1275
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 1472
BshFI GGCC 3 cut(s) 29, 388, 435
BshNI GGYRCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 1482
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 3 cut(s) 217, 254, 1483
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 2 cut(s) 896, 1187
BsmAI GTCTC 2 cut(s) 80, 774
BsmFI GGGAC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 3 cut(s) 29, 388, 435
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 907, 1472
Bsp143I GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
Bsp1720I GCTNAGC 1 cut(s) 460
BspACI CCGC 2 cut(s) 126, 1000
BspANI GGCC 3 cut(s) 29, 388, 435
BspCNI CTCAG 4 cut(s) 473, 563, 778, 1000
BspLI GGNNCC 3 cut(s) 370, 408, 1296
BspMAI CTGCAG 2 cut(s) 962, 1424
BspMI ACCTGC 2 cut(s) 131, 892
BspPI GGATC 2 cut(s) 1289, 1302
BspQI GCTCTTC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 4 cut(s) 747, 780, 856, 1372
BsrFI RCCGGY 1 cut(s) 1482
BsrI ACTGG 2 cut(s) 1029, 1275
BssAI RCCGGY 1 cut(s) 1482
BssECI CCNNGG 5 cut(s) 217, 372, 389, 420, 445
BssMI GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
BssT1I CCWWGG 3 cut(s) 372, 420, 445
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 7 cut(s) 71, 91, 167, 476, 699, 1177, 1467
Bst6I CTCTTC 6 cut(s) 14, 489, 989, 1038, 1389, 1479
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 31, 148, 612, 847
BstDEI CTNAG 5 cut(s) 460, 550, 786, 987, 1129
BstF5I GGATG 1 cut(s) 1410
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 6 cut(s) 208, 233, 523, 649, 932, 1297
BstMAI GTCTC 2 cut(s) 80, 774
BstMBI GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
BstMWI GCNNNNNNNGC 7 cut(s) 30, 39, 45, 48, 126, 132, 1103
BstNI CCWGG 1 cut(s) 390
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 216, 388
BstSFI CTRYAG 3 cut(s) 399, 958, 1420
BstSLI GKGCMC 1 cut(s) 1472
BstV2I GAAGAC 1 cut(s) 739
BstX2I RGATCY 5 cut(s) 205, 230, 646, 929, 1294
BstYI RGATCY 5 cut(s) 205, 230, 646, 929, 1294
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 3 cut(s) 29, 388, 435
BtsCI GGATG 1 cut(s) 1410
BtsI GCAGTG 1 cut(s) 1334
BtsIMutI CAGTG 2 cut(s) 481, 1334
BveI ACCTGC 2 cut(s) 131, 892
Cac8I GCNNGC 4 cut(s) 31, 148, 612, 847
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 1482
Cfr13I GGNCC 2 cut(s) 407, 1026
Csp6I GTAC 2 cut(s) 984, 1173
CspAI ACCGGT 1 cut(s) 1482
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 5 cut(s) 546, 896, 940, 1100, 1185
CviQI GTAC 2 cut(s) 984, 1173
DdeI CTNAG 5 cut(s) 460, 550, 786, 987, 1129
DpnI GATC 6 cut(s) 207, 232, 522, 648, 931, 1296
DpnII GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
EaeI YGGCCR 2 cut(s) 386, 433
Eam1104I CTCTTC 6 cut(s) 14, 489, 989, 1038, 1389, 1479
EarI CTCTTC 6 cut(s) 14, 489, 989, 1038, 1389, 1479
EciI GGCGGA 1 cut(s) 1015
Eco130I CCWWGG 3 cut(s) 372, 420, 445
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 1 cut(s) 1067
Eco47I GGWCC 2 cut(s) 407, 1026
Eco57I CTGAAG 3 cut(s) 654, 663, 810
Eco72I CACGTG 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 1067
EcoT14I CCWWGG 3 cut(s) 372, 420, 445
ErhI CCWWGG 3 cut(s) 372, 420, 445
FaeI CATG 5 cut(s) 549, 899, 943, 1103, 1188
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 315, 347
FaqI GGGAC 1 cut(s) 756
FatI CATG 5 cut(s) 545, 895, 939, 1099, 1184
FblI GTMKAC 2 cut(s) 398, 703
FokI GGATG 1 cut(s) 1397
FspBI CTAG 4 cut(s) 342, 680, 794, 1319
GlaI GCGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 643
HaeIII GGCC 3 cut(s) 29, 388, 435
HapII CCGG 3 cut(s) 217, 254, 1483
HhaI GCGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 549, 899, 943, 1103, 1188
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 5 cut(s) 395, 719, 1012, 1037, 1363
HpaII CCGG 3 cut(s) 217, 254, 1483
HphI GGTGA 3 cut(s) 349, 1003, 1366
Hpy166II GTNNAC 3 cut(s) 383, 399, 704
Hpy188I TCNGA 7 cut(s) 520, 553, 643, 946, 979, 1042, 1459
Hpy188III TCNNGA 5 cut(s) 203, 212, 569, 741, 1298
Hpy8I GTNNAC 3 cut(s) 383, 399, 704
Hpy99I CGWCG 3 cut(s) 95, 98, 101
HpyAV CCTTC 2 cut(s) 629, 1103
HpyCH4III ACNGT 7 cut(s) 71, 91, 167, 476, 699, 1177, 1467
HpyCH4IV ACGT 2 cut(s) 269, 430
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 39, 45, 48, 126, 132, 1103
HpyF3I CTNAG 5 cut(s) 460, 550, 786, 987, 1129
HpySE526I ACGT 2 cut(s) 269, 430
Hsp92II CATG 5 cut(s) 549, 899, 943, 1103, 1188
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 3 cut(s) 469, 562, 892
LweI GCATC 1 cut(s) 165
MaeI CTAG 4 cut(s) 342, 680, 794, 1319
MaeII ACGT 2 cut(s) 269, 430
MaeIII GTNAC 5 cut(s) 71, 184, 337, 1403, 1478
MalI GATC 6 cut(s) 207, 232, 522, 648, 931, 1296
MboI GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
MflI RGATCY 5 cut(s) 205, 230, 646, 929, 1294
MhlI GDGCHC 2 cut(s) 907, 1472
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 8 cut(s) 501, 508, 537, 862, 1146, 1218, 1348, 1388
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 3 cut(s) 203, 924, 948
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 6 cut(s) 192, 597, 806, 860, 1020, 1145
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 3 cut(s) 217, 254, 1483
MspR9I CCNGG 2 cut(s) 218, 390
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 7 cut(s) 30, 39, 45, 48, 126, 132, 1103
NciI CCSGG 1 cut(s) 218
NdeII GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
NlaIII CATG 5 cut(s) 549, 899, 943, 1103, 1188
NlaIV GGNNCC 3 cut(s) 370, 408, 1296
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 354
PfeI GAWTC 4 cut(s) 719, 1012, 1037, 1363
PflFI GACNNNGTC 1 cut(s) 699
PinAI ACCGGT 1 cut(s) 1482
PleI GAGTC 1 cut(s) 403
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 431
PshAI GACNNNNGTC 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 388
PspCI CACGTG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 370, 408, 1296
PspPI GGNCC 2 cut(s) 407, 1026
PstI CTGCAG 2 cut(s) 962, 1424
PsuI RGATCY 5 cut(s) 205, 230, 646, 929, 1294
PsyI GACNNNGTC 1 cut(s) 699
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 2 cut(s) 985, 1174
RsaNI GTAC 2 cut(s) 984, 1173
RseI CAYNNNNRTG 1 cut(s) 900
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 6 cut(s) 192, 597, 806, 860, 1020, 1145
Sau3AI GATC 6 cut(s) 205, 230, 520, 646, 929, 1294
Sau96I GGNCC 2 cut(s) 407, 1026
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 218, 390
SduI GDGCHC 2 cut(s) 907, 1472
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 3 cut(s) 399, 958, 1420
SinI GGWCC 2 cut(s) 407, 1026
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
Sse9I AATT 8 cut(s) 501, 508, 537, 862, 1146, 1218, 1348, 1388
SsiI CCGC 2 cut(s) 126, 1000
SspI AATATT 2 cut(s) 667, 1283
SspMI CTAG 4 cut(s) 342, 680, 794, 1319
StyD4I CCNGG 2 cut(s) 216, 388
StyI CCWWGG 3 cut(s) 372, 420, 445
TaaI ACNGT 7 cut(s) 71, 91, 167, 476, 699, 1177, 1467
TaiI ACGT 2 cut(s) 272, 433
TaqI TCGA 1 cut(s) 99
TasI AATT 8 cut(s) 501, 508, 537, 862, 1146, 1218, 1348, 1388
TatI WGTACW 1 cut(s) 983
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 4 cut(s) 719, 1012, 1037, 1363
Tru1I TTAA 6 cut(s) 192, 597, 806, 860, 1020, 1145
Tru9I TTAA 6 cut(s) 192, 597, 806, 860, 1020, 1145
TscAI CASTG 2 cut(s) 481, 1341
TseFI GTSAC 1 cut(s) 337
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 4 cut(s) 29, 521, 534, 792
TspRI CASTG 2 cut(s) 481, 1341
Tth111I GACNNNGTC 1 cut(s) 699
VpaK11BI GGWCC 2 cut(s) 407, 1026
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 443
XmiI GTMKAC 2 cut(s) 398, 703
XspI CTAG 4 cut(s) 342, 680, 794, 1319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.