Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

3631887 .. 3638100

Gene Structure 6214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2745 bp

ATGGTGGGACTGGAAGATGATACTGAGAGAGAGAGGTCACCAGTCGTAGAGAATGGTTTTTCCAATGGGTCTCGGTCTTCTTCTTCTAGCGCAGGTGTTTTGTCTCCATCACGAAAGGTCACTCAGGGGAACGATACACTTTCTTATGCCAATATTCTTCGGGCAAGAAACAAGTTTGCTGATGCGCTTGCTCTCTATGAGGCTATGCTGGAGAAAGATAGCAAGAATGTTGAAGCTCACATTGGAAAAGGGATATGCTTGCAGACGCAGAACAAAGGGAATCTAGCTTTCGATTGTTTTTCTGAAGCGATCAGGTTGGATCCGCATAATGCTTGTGCCCTTACACACTGTGGTATACTTCATAAAGAAGAAGGACGCCTCGTAGAAGCTGCTGAGTCCTACCAGAAAGCATTGATGGCAGATGCATCATACAAGCCAGCAGCAGAGTGTTTAGCCATTGTTTTGACCGACCTTGGAACTAGCCTGAAGCTGGCTGGGAATACTCAGGAAGGAATTCAAAAGTATTACGAAGCCCTTAAGATTGACCCACACTATGCTCCTGCATATTACAACTTAGGTGTTGTATACTCCGAAATGATGCAATATGACAATGCCTTGAGCTGCTACGAGAAGGCTGCACTTGAGAGGCCTATGTATGCTGAAGCATATTGTAACATGGGTGTCATTTATAAGAACCGTGGTGACTTGGAGATGGCAATCACTTGTTATGAGAGATGTCTAGCTGTGTCTCCAAACTTTGAGATTGCGAAGAACAATATGGCCATAGCTCTGACAGATTTAGGAACAAAGGTTAAACTTGAAGGCGATGTAACCCAAGGAGTGGCATATTACAAGAAGGCTCTCTATTATAACTGGCACTATGCAGATGCTATGTACAATCTTGGGGTGGCTTATGGAGAAATGCTAAAGTTCGACATGGCGATTGTCTTCTATGAGCTTGCTTTCCACTTTAATCCACATTGTGCTGAGGCTTGCAACAATTTGGGAGTACTTTACAAAGACCGTGACAACCTTGATAAAGCTGTGGAGTGTTATCAGATGGCTCTATCAATCAAACCAAATTTTGCACAGTCGCTTAATAACCTTGGTGTCGTCTATACAGTCCAGGGGAAAATGGATGCTGCTGCCAGCATGATTGAGAAGGCTATACTTGCTAATCCCACATATGCAGAAGCTTTTAACAACCTAGGTGTTCTTTACAGAGATGCTGGAAATATAACTATGGCTATCGATGCTTATGAGGAATGCCTTAAGATAGATCCAGATTCTCGCAATGCTGGCCAGAACCGATTGCTTGCCATGAATTACATAAATGAAGGACTCGATGACAAACTATTTGAGGCTCACAGAGACTGGGGTTGGCGCTTCACAAGATTACACCCTCAATACACTTCATGGGATAATCTGAAAGATCCAGAGCGACCTATCACCATTGGATATATCTCACCAGATTTCTTCACTCATTCAGTATCTTATTTCATTGAAGCTCCCCTTACGCATCATGATTATACAAAGTACAAAGTGGTGGTTTATTCAGCGGTAGTTAAGGCAGATGCAAAAACATACAGGTTTAGGGATAAAGTGTTGAAGAAAGGTGGAGTTTGGAAGGATATATACGGGATAGATGAGAAAAAGATAGCAAGTATGGTCAGAGAGGACAAAATCGACATTTTGGTAGAACTCACTGGTCATACGGCAAACAACAAGTTGGGAACAATGGCCTGCAGACCAGCACCGGTTCAGGTTACTTGGATCGGCTATCCAAATACTACGGGTTTGCCCACTGTTGATTACAGAATTACAGATTCGTTGGCTGATCCACCAGATACCAAACAAAAGCAGGTCGAGGAGCTGGTTAGGCTTCCGGACTGTTTTCTTTGTTATACACCTTCCCCAGAGGCTGGTCCTGTTTGTCCAACACCTGCGCTTTCTAATGGCTTTGTCACATTTGGTAGTTTCAACAACCTCGCAAAGATAACTCCTAAGGTGCTGCAAGTGTGGGCTAGGATACTGTGTGCAGTTCCCAATTCTCGTCTAGTGGTAAAATGCAAACCTTTCTGCTGCGATAGCATTAGGCAGAGGTTTCTCACCACGCTGGAGCAGCTTGGGTTAGAATCAAAGCGTGTTGATCTCTTGCCTTTGATTCTTTTCAATCACGACCATATGCAAGCCTATTCCTTGATGGATATTAGTTTGGACACATTCCCTTATGCTGGAACTACCACTACCTGTGAGTCTCTCTACATGGGAGTTCCATGTGTTACAATGGCTGGCTCAGTACATGCTCATAATGTTGGTGTCAGTCTTCTCACTAAAGTTGGATTAGGACACCTGGTTGCCAAAAATGAGGATGAGTATGTTCAGCTATCTGTTGATCTAGCCTCTGATGTCACAGCTCTTTCTAAATTGAGAATGAGTCTCCGGGATCTAATGGCTGGATCTCCTGTTTGTAATGGTCCTTCCTTTGCTGTTGGTCTTGAATCCGCATATCGGAATATGTGGAAAAAGTACTGCAAAGGTGAAGTGCCGTCCTTAAGGCGAATGGAAATGCTGCAAAAAGAGGTCCATGATGATCCCTTAATCTCAAAAGACTTGGGACCATCAAGAGTCAGCGTTACTGGAGAAGCCACTCCGTCTCTCAAGGCCAATGGTTCTGCTCCTGTACCTTCCTCTTTACCAACCCAATCCCCGCAGCTCTCAAAGAGAATGGACTCCACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

914

Amino Acids

101.43

Weight (kDa)

5.98

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_11	PF13414	166 - 198	1.5e-06	TPR repeat
TPR_1	PF00515	186 - 212	1.8e-07	Tetratricopeptide repeat
TPR_1	PF00515	220 - 253	7.5e-10	Tetratricopeptide repeat
TPR_2	PF07719	220 - 252	1.7e-06	Tetratricopeptide repeat
TPR_8	PF13181	220 - 252	1.2e-07	Tetratricopeptide repeat
TPR_1	PF00515	329 - 362	1.5e-09	Tetratricopeptide repeat
TPR_2	PF07719	329 - 361	6.3e-06	Tetratricopeptide repeat
TPR_11	PF13414	338 - 376	1.9e-07	TPR repeat
TPR_12	PF13424	363 - 427	6.5e-08	Tetratricopeptide repeat
TPR_16	PF13432	375 - 430	7.4e-06	Tetratricopeptide repeat
TPR_1	PF00515	397 - 429	8.4e-09	Tetratricopeptide repeat
TPR_2	PF07719	397 - 429	1.9e-06	Tetratricopeptide repeat
TPR_8	PF13181	397 - 429	2.1e-06	Tetratricopeptide repeat
Glyco_transf_41	PF13844	468 - 633	6.6e-25	Glycosyl transferase family 41
Glyco_transf_41	PF13844	650 - 826	2.2e-24	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	690, 870
AarI	CACCTGC	2 cut(s)	83, 1951
Acc36I	ACCTGC	3 cut(s)	83, 1852, 1951
AccB7I	CCANNNNNTGG	2 cut(s)	841, 1922
AccI	GTMKAC	2 cut(s)	355, 585
AccIII	TCCGGA	1 cut(s)	1885
AciI	CCGC	4 cut(s)	323, 1559, 2505, 2711
AclWI	GGATC	9 cut(s)	314, 327, 1274, 1427, 1781, 1832, 2454, 2467, 2588
AcoI	YGGCCR	2 cut(s)	780, 1300
AcsI	RAATTY	2 cut(s)	513, 1081
AcuI	CTGAAG	3 cut(s)	324, 506, 681
AcyI	GRCGYC	1 cut(s)	376
AdeI	CACNNNGTG	2 cut(s)	350, 983
AfaI	GTAC	6 cut(s)	896, 1011, 1538, 2301, 2531, 2685
AfiI	CCNNNNNNNGG	5 cut(s)	490, 841, 1922, 2234, 2511
AflII	CTTAAG	3 cut(s)	536, 1271, 2554
AgeI	ACCGGT	1 cut(s)	1756
AgsI	TTSAA	8 cut(s)	233, 518, 821, 1505, 1609, 1981, 2173, 2501
AjnI	CCWGG	2 cut(s)	1125, 2352
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
Alw26I	GTCTC	7 cut(s)	75, 108, 753, 1365, 2262, 2444, 2661
AlwI	GGATC	9 cut(s)	314, 327, 1274, 1427, 1781, 1832, 2454, 2467, 2588
AlwNI	CAGNNNCTG	2 cut(s)	1374, 1922
Aor13HI	TCCGGA	1 cut(s)	1885
AoxI	GGCC	5 cut(s)	647, 780, 1300, 1740, 2664
ApoI	RAATTY	2 cut(s)	513, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	1340, 1372
AsiGI	ACCGGT	1 cut(s)	1756
Asp700I	GAANNNNTTC	1 cut(s)	513
AspA2I	CCTAGG	1 cut(s)	1207
AspLEI	GCGC	4 cut(s)	92, 187, 1386, 1948
AspS9I	GGNCC	4 cut(s)	1925, 2477, 2584, 2618
AsuC2I	CCSGG	1 cut(s)	2444
AsuHPI	GGTGA	6 cut(s)	30, 713, 1441, 1458, 2101, 2552
AvaII	GGWCC	4 cut(s)	1925, 2477, 2584, 2618
AvrII	CCTAGG	1 cut(s)	1207
AxyI	CCTNAGG	1 cut(s)	2004
BaeGI	GKGCMC	1 cut(s)	340
BalI	TGGCCA	2 cut(s)	782, 1302
BamHI	GGATCC	1 cut(s)	319
BarI	GAAGNNNNNNTAC	4 cut(s)	1619, 1651, 2464, 2496
BbsI	GAAGAC	3 cut(s)	69, 940, 2318
BbvCI	CCTCAGC	1 cut(s)	987
BccI	CCATC	6 cut(s)	115, 409, 706, 1054, 2197, 2629
BceAI	ACGGC	2 cut(s)	1731, 2533
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	1127, 2354
BciVI	GTATCC	1 cut(s)	2022
BcnI	CCSGG	1 cut(s)	2444
BcoDI	GTCTC	7 cut(s)	75, 108, 753, 1365, 2262, 2444, 2661
BfmI	CTRYAG	1 cut(s)	1744
BfoI	RGCGCY	1 cut(s)	1387
BfrI	CTTAAG	3 cut(s)	536, 1271, 2554
BfuAI	ACCTGC	3 cut(s)	83, 1852, 1951
BfuI	GTATCC	1 cut(s)	2022
BlnI	CCTAGG	1 cut(s)	1207
BmcAI	AGTACT	2 cut(s)	1011, 2531
Bme1390I	CCNGG	3 cut(s)	1127, 2354, 2444
Bme18I	GGWCC	4 cut(s)	1925, 2477, 2584, 2618
BmgT120I	GGNCC	4 cut(s)	1925, 2477, 2584, 2618
BmiI	GGNNCC	2 cut(s)	321, 2619
BmrFI	CCNGG	3 cut(s)	1127, 2354, 2444
BmrI	ACTGGG	1 cut(s)	1384
BmuI	ACTGGG	1 cut(s)	1384
BpiI	GAAGAC	3 cut(s)	69, 940, 2318
BpmI	CTGGAG	3 cut(s)	230, 2138, 2661
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	3 cut(s)	637, 662, 2645
BpuMI	CCSGG	1 cut(s)	2444
Bsa29I	ATCGAT	1 cut(s)	1251
BsaBI	GATNNNNATC	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	376
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	6 cut(s)	472, 697, 835, 1105, 1126, 1207
BsaWI	WCCGGW	2 cut(s)	1756, 1885
Bsc4I	CCNNNNNNNGG	5 cut(s)	490, 841, 1922, 2234, 2511
Bse118I	RCCGGY	1 cut(s)	1756
Bse1I	ACTGG	6 cut(s)	15, 41, 878, 1379, 1711, 2644
Bse21I	CCTNAGG	1 cut(s)	2004
Bse3DI	GCAATG	1 cut(s)	1300
Bse8I	GATNNNNATC	1 cut(s)	716
BseAI	TCCGGA	1 cut(s)	1885
BseBI	CCWGG	2 cut(s)	1127, 2354
BseCI	ATCGAT	1 cut(s)	1251
BseDI	CCNNGG	6 cut(s)	472, 697, 835, 1105, 1126, 1207
BseGI	GGATG	2 cut(s)	1144, 2377
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	5 cut(s)	490, 841, 1922, 2234, 2511
BseMI	GCAATG	1 cut(s)	1300
BseMII	CTCAG	6 cut(s)	15, 137, 384, 518, 978, 2310
BseNI	ACTGG	6 cut(s)	15, 41, 878, 1379, 1711, 2644
BseRI	GAGGAG	1 cut(s)	1883
BseSI	GKGCMC	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	494
BsgI	GTGCAG	2 cut(s)	621, 2058
BshFI	GGCC	5 cut(s)	649, 782, 1302, 1742, 2666
BshTI	ACCGGT	1 cut(s)	1756
BshVI	ATCGAT	1 cut(s)	1251
BsiSI	CCGG	3 cut(s)	1757, 1886, 2443
BslFI	GGGAC	2 cut(s)	21, 2631
BslI	CCNNNNNNNGG	5 cut(s)	490, 841, 1922, 2234, 2511
BsmAI	GTCTC	7 cut(s)	75, 108, 753, 1365, 2262, 2444, 2661
BsmBI	CGTCTC	1 cut(s)	2661
BsmFI	GGGAC	2 cut(s)	21, 2631
BsmI	GAATGC	1 cut(s)	1271
BsnI	GGCC	5 cut(s)	649, 782, 1302, 1742, 2666
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	1885
Bsp1407I	TGTACA	1 cut(s)	894
BspACI	CCGC	4 cut(s)	323, 1559, 2505, 2711
BspANI	GGCC	5 cut(s)	649, 782, 1302, 1742, 2666
BspCNI	CTCAG	6 cut(s)	16, 136, 385, 517, 979, 2309
BspDI	ATCGAT	1 cut(s)	1251
BspEI	TCCGGA	1 cut(s)	1885
BspHI	TCATGA	1 cut(s)	1522
BspLI	GGNNCC	2 cut(s)	321, 2619
BspMAI	CTGCAG	1 cut(s)	1748
BspMI	ACCTGC	3 cut(s)	83, 1852, 1951
BspPI	GGATC	9 cut(s)	314, 327, 1274, 1427, 1781, 1832, 2454, 2467, 2588
BspTI	CTTAAG	3 cut(s)	536, 1271, 2554
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	1300
BsrFI	RCCGGY	1 cut(s)	1756
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	6 cut(s)	15, 41, 878, 1379, 1711, 2644
BssAI	RCCGGY	1 cut(s)	1756
BssECI	CCNNGG	6 cut(s)	472, 697, 835, 1105, 1126, 1207
BssNAI	GTATAC	2 cut(s)	356, 586
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	4 cut(s)	472, 835, 1105, 1207
Bst1107I	GTATAC	2 cut(s)	356, 586
Bst2UI	CCWGG	2 cut(s)	1127, 2354
Bst4CI	ACNGT	8 cut(s)	350, 698, 1025, 1092, 1123, 1807, 1892, 2034
BstACI	GRCGYC	1 cut(s)	376
BstAFI	CTTAAG	3 cut(s)	536, 1271, 2554
BstAUI	TGTACA	1 cut(s)	894
BstDEI	CTNAG	8 cut(s)	24, 123, 393, 504, 574, 987, 2004, 2296
BstDSI	CCRYGG	1 cut(s)	697
BstEII	GGTNACC	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	1144, 2377
BstH2I	RGCGCY	1 cut(s)	1387
BstHHI	GCGC	4 cut(s)	92, 187, 1386, 1948
BstMAI	GTCTC	7 cut(s)	75, 108, 753, 1365, 2262, 2444, 2661
BstMWI	GCNNNNNNNGC	7 cut(s)	416, 1172, 1253, 1299, 1879, 2088, 2122
BstNI	CCWGG	2 cut(s)	1127, 2354
BstNSI	RCATGY	1 cut(s)	2306
BstPI	GGTNACC	1 cut(s)	36
BstSCI	CCNGG	3 cut(s)	1125, 2352, 2442
BstSFI	CTRYAG	1 cut(s)	1744
BstSLI	GKGCMC	1 cut(s)	340
BstV2I	GAAGAC	3 cut(s)	69, 940, 2318
BstX2I	RGATCY	5 cut(s)	319, 1279, 1432, 2446, 2459
BstYI	RGATCY	5 cut(s)	319, 1279, 1432, 2446, 2459
BstZ17I	GTATAC	2 cut(s)	356, 586
Bsu15I	ATCGAT	1 cut(s)	1251
Bsu36I	CCTNAGG	1 cut(s)	2004
BsuI	GTATCC	1 cut(s)	2022
BsuRI	GGCC	5 cut(s)	649, 782, 1302, 1742, 2666
BsuTUI	ATCGAT	1 cut(s)	1251
BtgI	CCRYGG	1 cut(s)	697
BtgZI	GCGATG	1 cut(s)	840
BtsCI	GGATG	2 cut(s)	1144, 2377
BtsIMutI	CAGTG	3 cut(s)	346, 1704, 1803
BveI	ACCTGC	3 cut(s)	83, 1852, 1951
CaiI	CAGNNNCTG	2 cut(s)	1374, 1922
CciI	TCATGA	1 cut(s)	1522
CfoI	GCGC	4 cut(s)	92, 187, 1386, 1948
Cfr10I	RCCGGY	1 cut(s)	1756
Cfr13I	GGNCC	4 cut(s)	1925, 2477, 2584, 2618
ClaI	ATCGAT	1 cut(s)	1251
CseI	GACGC	2 cut(s)	274, 384
CsiI	ACCWGGT	1 cut(s)	2352
Csp6I	GTAC	6 cut(s)	895, 1010, 1537, 2300, 2530, 2684
CspAI	ACCGGT	1 cut(s)	1756
CviQI	GTAC	6 cut(s)	895, 1010, 1537, 2300, 2530, 2684
DdeI	CTNAG	8 cut(s)	24, 123, 393, 504, 574, 987, 2004, 2296
DraIII	CACNNNGTG	2 cut(s)	350, 983
EaeI	YGGCCR	2 cut(s)	780, 1300
Eco130I	CCWWGG	4 cut(s)	472, 835, 1105, 1207
Eco147I	AGGCCT	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	4 cut(s)	1925, 2477, 2584, 2618
Eco57I	CTGAAG	3 cut(s)	324, 506, 681
Eco81I	CCTNAGG	1 cut(s)	2004
Eco91I	GGTNACC	1 cut(s)	36
EcoO65I	GGTNACC	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	1125, 2352
EcoT14I	CCWWGG	4 cut(s)	472, 835, 1105, 1207
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	4 cut(s)	472, 835, 1105, 1207
Esp3I	CGTCTC	1 cut(s)	2661
FalI	AAGNNNNNCTT	2 cut(s)	1497, 1529
FaqI	GGGAC	2 cut(s)	21, 2631
FauI	CCCGC	1 cut(s)	2718
FauNDI	CATATG	2 cut(s)	1186, 2184
FblI	GTMKAC	2 cut(s)	355, 585
FokI	GGATG	2 cut(s)	1151, 2384
GlaI	GCGC	4 cut(s)	91, 186, 1385, 1947
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	3 cut(s)	230, 2138, 2661
HaeII	RGCGCY	1 cut(s)	1387
HaeIII	GGCC	5 cut(s)	649, 782, 1302, 1742, 2666
HapII	CCGG	3 cut(s)	1757, 1886, 2443
HgaI	GACGC	2 cut(s)	274, 384
HhaI	GCGC	4 cut(s)	92, 187, 1386, 1948
Hin1I	GRCGYC	1 cut(s)	376
Hin6I	GCGC	4 cut(s)	90, 185, 1384, 1946
HinP1I	GCGC	4 cut(s)	90, 185, 1384, 1946
HindIII	AAGCTT	1 cut(s)	1194
HpaII	CCGG	3 cut(s)	1757, 1886, 2443
HphI	GGTGA	6 cut(s)	30, 713, 1441, 1458, 2101, 2552
Hpy166II	GTNNAC	2 cut(s)	356, 586
Hpy188I	TCNGA	8 cut(s)	304, 592, 792, 1059, 1428, 1673, 2407, 2514
Hpy188III	TCNNGA	9 cut(s)	111, 506, 1283, 1436, 1523, 1886, 2177, 2498, 2625
Hpy8I	GTNNAC	2 cut(s)	356, 586
HpyCH4III	ACNGT	8 cut(s)	350, 698, 1025, 1092, 1123, 1807, 1892, 2034
HpyF10VI	GCNNNNNNNGC	7 cut(s)	416, 1172, 1253, 1299, 1879, 2088, 2122
HpyF3I	CTNAG	8 cut(s)	24, 123, 393, 504, 574, 987, 2004, 2296
Hsp92I	GRCGYC	1 cut(s)	376
HspAI	GCGC	4 cut(s)	90, 185, 1384, 1946
Kpn2I	TCCGGA	1 cut(s)	1885
LmnI	GCTCC	5 cut(s)	562, 1513, 1870, 2119, 2683
MabI	ACCWGGT	1 cut(s)	2352
MflI	RGATCY	5 cut(s)	319, 1279, 1432, 2446, 2459
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	2 cut(s)	782, 1302
MluCI	AATT	7 cut(s)	513, 1000, 1081, 1324, 1818, 2047, 2426
MluNI	TGGCCA	2 cut(s)	782, 1302
MlyI	GAGTC	6 cut(s)	404, 1335, 2264, 2446, 2637, 2726
MmeI	TCCRAC	3 cut(s)	297, 1961, 2320
Mox20I	TGGCCA	2 cut(s)	782, 1302
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	1885
MroXI	GAANNNNTTC	1 cut(s)	513
MscI	TGGCCA	2 cut(s)	782, 1302
MseI	TTAA	9 cut(s)	537, 813, 972, 1098, 1200, 1272, 1566, 2555, 2600
Msp20I	TGGCCA	2 cut(s)	782, 1302
MspA1I	CMGCKG	1 cut(s)	1559
MspCI	CTTAAG	3 cut(s)	536, 1271, 2554
MspI	CCGG	3 cut(s)	1757, 1886, 2443
MspR9I	CCNGG	3 cut(s)	1127, 2354, 2444
Mva1269I	GAATGC	1 cut(s)	1271
MvaI	CCWGG	2 cut(s)	1127, 2354
MwoI	GCNNNNNNNGC	7 cut(s)	416, 1172, 1253, 1299, 1879, 2088, 2122
NciI	CCSGG	1 cut(s)	2444
NdeI	CATATG	2 cut(s)	1186, 2184
NlaIV	GGNNCC	2 cut(s)	321, 2619
NmuCI	GTSAC	6 cut(s)	36, 118, 701, 1025, 1963, 2410
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	2306
PagI	TCATGA	1 cut(s)	1522
PaqCI	CACCTGC	2 cut(s)	83, 1951
PceI	AGGCCT	1 cut(s)	649
PctI	GAATGC	1 cut(s)	1271
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	6 cut(s)	280, 1286, 1826, 2135, 2164, 2501
PflMI	CCANNNNNTGG	2 cut(s)	841, 1922
PfoI	TCCNGGA	1 cut(s)	2442
PinAI	ACCGGT	1 cut(s)	1756
PleI	GAGTC	6 cut(s)	403, 1335, 2263, 2445, 2636, 2726
PpsI	GAGTC	6 cut(s)	403, 1335, 2263, 2445, 2636, 2726
PsiI	TTATAA	2 cut(s)	690, 870
Psp6I	CCWGG	2 cut(s)	1125, 2352
PspEI	GGTNACC	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	2 cut(s)	1125, 2352
PspN4I	GGNNCC	2 cut(s)	321, 2619
PspPI	GGNCC	4 cut(s)	1925, 2477, 2584, 2618
PsrI	GAACNNNNNNTAC	2 cut(s)	2230, 2262
PstI	CTGCAG	1 cut(s)	1748
PstNI	CAGNNNCTG	2 cut(s)	1374, 1922
PsuI	RGATCY	5 cut(s)	319, 1279, 1432, 2446, 2459
RsaI	GTAC	6 cut(s)	896, 1011, 1538, 2301, 2531, 2685
RsaNI	GTAC	6 cut(s)	895, 1010, 1537, 2300, 2530, 2684
SaqAI	TTAA	9 cut(s)	537, 813, 972, 1098, 1200, 1272, 1566, 2555, 2600
Sau96I	GGNCC	4 cut(s)	1925, 2477, 2584, 2618
ScaI	AGTACT	2 cut(s)	1011, 2531
SchI	GAGTC	6 cut(s)	404, 1335, 2264, 2446, 2637, 2726
ScrFI	CCNGG	3 cut(s)	1127, 2354, 2444
SduI	GDGCHC	1 cut(s)	340
SexAI	ACCWGGT	1 cut(s)	2352
SfcI	CTRYAG	1 cut(s)	1744
SinI	GGWCC	4 cut(s)	1925, 2477, 2584, 2618
SmlI	CTYRAG	6 cut(s)	536, 616, 641, 1271, 2554, 2660
SmoI	CTYRAG	6 cut(s)	536, 616, 641, 1271, 2554, 2660
Sse9I	AATT	7 cut(s)	513, 1000, 1081, 1324, 1818, 2047, 2426
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	4 cut(s)	323, 1559, 2505, 2711
SspI	AATATT	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	3 cut(s)	1125, 2352, 2442
StyI	CCWWGG	4 cut(s)	472, 835, 1105, 1207
TaaI	ACNGT	8 cut(s)	350, 698, 1025, 1092, 1123, 1807, 1892, 2034
TaqI	TCGA	6 cut(s)	291, 933, 1251, 1344, 1686, 1866
TaqII	GACCGA	2 cut(s)	63, 482
TasI	AATT	7 cut(s)	513, 1000, 1081, 1324, 1818, 2047, 2426
TatI	WGTACW	5 cut(s)	894, 1009, 1536, 2299, 2529
TfiI	GAWTC	6 cut(s)	280, 1286, 1826, 2135, 2164, 2501
Tru1I	TTAA	9 cut(s)	537, 813, 972, 1098, 1200, 1272, 1566, 2555, 2600
Tru9I	TTAA	9 cut(s)	537, 813, 972, 1098, 1200, 1272, 1566, 2555, 2600
TscAI	CASTG	3 cut(s)	353, 1711, 1810
TseFI	GTSAC	6 cut(s)	36, 118, 701, 1025, 1963, 2410
Tsp45I	GTSAC	6 cut(s)	36, 118, 701, 1025, 1963, 2410
TspDTI	ATGAA	5 cut(s)	350, 1337, 1350, 1404, 1489
TspGWI	ACGGA	1 cut(s)	2643
TspRI	CASTG	3 cut(s)	353, 1711, 1810
Van91I	CCANNNNNTGG	2 cut(s)	841, 1922
Vha464I	CTTAAG	3 cut(s)	536, 1271, 2554
VpaK11BI	GGWCC	4 cut(s)	1925, 2477, 2584, 2618
XapI	RAATTY	2 cut(s)	513, 1081
XceI	RCATGY	1 cut(s)	2306
XmaJI	CCTAGG	1 cut(s)	1207
XmiI	GTMKAC	2 cut(s)	355, 585
XmnI	GAANNNNTTC	1 cut(s)	513
ZrmI	AGTACT	2 cut(s)	1011, 2531
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.