Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

19322045 .. 19330698

Gene Structure 8654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGGCTTGGACGGATAAAGATGGTTGTAATGGGAAAGAAGGGGACCCAGTTGTAGAAAATGGATTCTTGAACTGTTCACAGCCTTCTCCTAGTACCAGTGGCTCTCTTCTTGCTGGTGCAACTCCCGAAGGGGGGAAGAGTTTTGAAGTGAAAGAGATGATTTCTTATGCCAACATTCTTCGTTCAAGGAACAAGTTTTCTGATGCTCTTAGTCTTTATGAGACTGTGTTGGAGAAAGATGCCGGAAATAATATGGGAAGGCTTGCTTTTGTCAGTTTCACGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCGCCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCAGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTGCTGGCAACACTCAAGATGGATTGCAGAAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCATATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTGCTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAATTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTACAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGACAGAGACAACCTTGATAAAGCAGTGGAGTGTTATCAGATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATAATTGCAAATCCCACATATGCGGAAGCATATAACAACCTAGGGGTTCTTTACAGAGATGCTGGCAATATTTCTATGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAATGCAGGCCAGAACCGGTTGCTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGTTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCGGAACGACCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGACAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTCGCAAGCATTGTTAGGGAAGATAAGATTGATATATTGGTGGAACTTACTGGTCATACTGCTAACAATAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCGATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAAGCAGAGTATGCATGTTGAGGAGCTGGTTCGATTACCAGAATGCTTCCTTTGTTATACACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTCGCAAAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCTCGCCTTGTAGTAAAATGTAAGCCCTTTAGTTGCGATAGTGTGAGAGAGAGATTTCTTTCAACATTGGAGCAGCTGGGGTTGGAACCACTACGTGTTGATCTTCTGCCTCTAATTTTACTCAATTACGATCATATGCAAGCATATTCTCTCATGGACATTAGTTTGGATACTTTTCCTTATGCTGGAACAACCACGACATGTGAATCTTTATATATGGGCGTTCCATGTGTTACTATGGCTGGTTCAGTACATGCACACAATGTTGGTGTCAGTATTCTTAGCACAGTGGGATTGGGAAACCTTATTGCCAAAAATGAGGAAGAATATGTTCAGTTGGCTGTGCAGTTGGCCTCTGACATAACAGCACTTTCAAATCTGAGGATGAGTCTGCGAGACCTCATGTCCAGGTCGCCTGTCTGTGATGGACCAAAGTTTACCCTTGGGCTGGAGTCGGCATACAGGAACATGTGGGGCAGGTACTGCAAAGGTGATGTGCCATCACAACGGCACATGGAAATACTACAACAGGAGATAACCCCTGAAGAGCCAACTACCAAAATTGCTGAACCAATAAGGATTACCGAATCAGGTTTTCCTGCATCGATTAAGTCCAATGGATTTAATCCTTGTCCAACACCTATGCCTAATCTCTCTTCTAGTGAAGAAAATGGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

903

Amino Acids

100.18

Weight (kDa)

5.41

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	179 - 205	6.3e-07	Tetratricopeptide repeat
TPR_1	PF00515	213 - 246	8.2e-10	Tetratricopeptide repeat
TPR_2	PF07719	213 - 245	8.4e-07	Tetratricopeptide repeat
TPR_8	PF13181	213 - 245	6.8e-08	Tetratricopeptide repeat
TPR_12	PF13424	213 - 281	1e-06	Tetratricopeptide repeat
TPR_1	PF00515	322 - 355	9e-10	Tetratricopeptide repeat
TPR_2	PF07719	322 - 354	3.5e-06	Tetratricopeptide repeat
TPR_11	PF13414	331 - 369	2.9e-06	TPR repeat
TPR_12	PF13424	357 - 420	1.6e-08	Tetratricopeptide repeat
TPR_1	PF00515	390 - 422	8.7e-10	Tetratricopeptide repeat
TPR_2	PF07719	390 - 422	2.8e-07	Tetratricopeptide repeat
TPR_8	PF13181	390 - 422	1.5e-07	Tetratricopeptide repeat
Glyco_transf_41	PF13844	469 - 627	1.1e-22	Glycosyl transferase family 41
Glyco_transf_41	PF13844	644 - 823	1.5e-25	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	549, 849
Acc36I	ACCTGC	1 cut(s)	2499
AccI	GTMKAC	3 cut(s)	564, 1095, 1360
AccIII	TCCGGA	1 cut(s)	1414
AciI	CCGC	3 cut(s)	355, 417, 1169
AclWI	GGATC	4 cut(s)	518, 1253, 1406, 1607
AcsI	RAATTY	3 cut(s)	733, 2010, 2029
AcuI	CTGAAG	2 cut(s)	660, 2595
AdeI	CACNNNGTG	1 cut(s)	2126
AfaI	GTAC	5 cut(s)	94, 341, 875, 2283, 2513
AfiI	CCNNNNNNNGG	7 cut(s)	131, 132, 361, 364, 1904, 2216, 2479
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	3 cut(s)	2125, 2231, 2499
AgeI	ACCGGT	1 cut(s)	1287
AhdI	GACNNNNNGTC	2 cut(s)	688, 2434
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	2438
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AloI	GAACNNNNNNTCC	2 cut(s)	927, 959
AluBI	AGCT	8 cut(s)	469, 512, 722, 1145, 1487, 1855, 1928, 2107
AluI	AGCT	8 cut(s)	469, 512, 722, 1145, 1487, 1855, 1928, 2107
Alw26I	GTCTC	3 cut(s)	215, 999, 2421
AlwI	GGATC	4 cut(s)	518, 1253, 1406, 1607
AlwNI	CAGNNNCTG	3 cut(s)	1353, 1910, 2514
Aor13HI	TCCGGA	1 cut(s)	1414
AoxI	GGCC	7 cut(s)	285, 352, 626, 1279, 1727, 1907, 2382
ApeKI	GCWGC	7 cut(s)	368, 419, 614, 1121, 1124, 1993, 2104
ApoI	RAATTY	3 cut(s)	733, 2010, 2029
AsiGI	ACCGGT	1 cut(s)	1287
Asp700I	GAANNNNTTC	1 cut(s)	2361
AspA2I	CCTAGG	1 cut(s)	1186
AspLEI	GCGC	1 cut(s)	595
AspS9I	GGNCC	4 cut(s)	43, 352, 1907, 2459
AsuHPI	GGTGA	2 cut(s)	908, 2534
AvaII	GGWCC	2 cut(s)	43, 2459
AvrII	CCTAGG	1 cut(s)	1186
AxyI	CCTNAGG	2 cut(s)	359, 1899
BaeGI	GKGCMC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	524
BbvI	GCAGC	7 cut(s)	355, 406, 601, 1108, 1111, 1980, 2116
BccI	CCATC	7 cut(s)	14, 296, 482, 1033, 1108, 2450, 2539
BceAI	ACGGC	2 cut(s)	606, 2555
BciT130I	CCWGG	1 cut(s)	2440
BciVI	GTATCC	1 cut(s)	2194
BcoDI	GTCTC	3 cut(s)	215, 999, 2421
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	6 cut(s)	90, 431, 459, 719, 1187, 2691
BfmI	CTRYAG	1 cut(s)	1536
BfoI	RGCGCY	1 cut(s)	596
BfrI	CTTAAG	1 cut(s)	905
BfuAI	ACCTGC	1 cut(s)	2499
BfuI	GTATCC	1 cut(s)	2194
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	8 cut(s)	355, 369, 420, 615, 1122, 1125, 1994, 2105
BlnI	CCTAGG	1 cut(s)	1186
BlsI	GCNGC	8 cut(s)	356, 370, 421, 616, 1123, 1126, 1995, 2106
Bme1390I	CCNGG	1 cut(s)	2440
Bme18I	GGWCC	2 cut(s)	43, 2459
BmeRI	GACNNNNNGTC	2 cut(s)	688, 2434
BmgT120I	GGNCC	4 cut(s)	43, 352, 1907, 2459
BmiI	GGNNCC	3 cut(s)	44, 45, 2118
BmrFI	CCNGG	1 cut(s)	2440
BmrI	ACTGGG	2 cut(s)	41, 1363
BmsI	GCATC	9 cut(s)	193, 229, 567, 856, 1108, 1195, 1222, 1543, 2642
BmuI	ACTGGG	2 cut(s)	41, 1363
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	3 cut(s)	1624, 1908, 2501
BpuEI	CTTGAG	1 cut(s)	468
Bsa29I	ATCGAT	2 cut(s)	810, 2636
BsaAI	YACGTR	1 cut(s)	2126
BsaBI	GATNNNNATC	2 cut(s)	810, 1441
BsaI	GGTCTC	1 cut(s)	2421
BsaJI	CCNNGG	3 cut(s)	553, 1186, 2473
BsaWI	WCCGGW	2 cut(s)	1287, 1414
Bsc4I	CCNNNNNNNGG	7 cut(s)	131, 132, 361, 364, 1904, 2216, 2479
Bse118I	RCCGGY	2 cut(s)	1287, 1725
Bse1I	ACTGG	7 cut(s)	47, 96, 857, 1358, 1690, 1777, 1815
Bse21I	CCTNAGG	2 cut(s)	359, 1899
Bse3DI	GCAATG	2 cut(s)	1250, 1305
Bse8I	GATNNNNATC	2 cut(s)	810, 1441
BseAI	TCCGGA	1 cut(s)	1414
BseBI	CCWGG	1 cut(s)	2440
BseCI	ATCGAT	2 cut(s)	810, 2636
BseDI	CCNNGG	3 cut(s)	553, 1186, 2473
BseGI	GGATG	2 cut(s)	1123, 2421
BseJI	GATNNNNATC	2 cut(s)	810, 1441
BseLI	CCNNNNNNNGG	7 cut(s)	131, 132, 361, 364, 1904, 2216, 2479
BseMI	GCAATG	2 cut(s)	1250, 1305
BseMII	CTCAG	5 cut(s)	315, 363, 1890, 2031, 2402
BseNI	ACTGG	7 cut(s)	47, 96, 857, 1358, 1690, 1777, 1815
BseRI	GAGGAG	2 cut(s)	1479, 1865
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	7 cut(s)	355, 406, 601, 1108, 1111, 1980, 2116
BseYI	CCCAGC	1 cut(s)	2107
BsgI	GTGCAG	3 cut(s)	984, 1716, 2396
BshFI	GGCC	7 cut(s)	287, 354, 628, 1281, 1729, 1909, 2384
BshTI	ACCGGT	1 cut(s)	1287
BshVI	ATCGAT	2 cut(s)	810, 2636
BsiSI	CCGG	4 cut(s)	243, 1288, 1415, 1726
BslFI	GGGAC	4 cut(s)	56, 1364, 1412, 1589
BslI	CCNNNNNNNGG	7 cut(s)	131, 132, 361, 364, 1904, 2216, 2479
BsmAI	GTCTC	3 cut(s)	215, 999, 2421
BsmFI	GGGAC	4 cut(s)	56, 1364, 1412, 1589
BsmI	GAATGC	4 cut(s)	313, 400, 431, 1877
BsnI	GGCC	7 cut(s)	287, 354, 628, 1281, 1729, 1909, 2384
Bso31I	GGTCTC	1 cut(s)	2421
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp13I	TCCGGA	1 cut(s)	1414
Bsp1407I	TGTACA	2 cut(s)	339, 873
Bsp143I	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
BspACI	CCGC	3 cut(s)	355, 417, 1169
BspANI	GGCC	7 cut(s)	287, 354, 628, 1281, 1729, 1909, 2384
BspCNI	CTCAG	5 cut(s)	314, 364, 1891, 2030, 2403
BspDI	ATCGAT	2 cut(s)	810, 2636
BspEI	TCCGGA	1 cut(s)	1414
BspHI	TCATGA	1 cut(s)	1312
BspLI	GGNNCC	3 cut(s)	44, 45, 2118
BspMAI	CTGCAG	1 cut(s)	1540
BspMI	ACCTGC	1 cut(s)	2499
BspPI	GGATC	4 cut(s)	518, 1253, 1406, 1607
BspQI	GCTCTTC	1 cut(s)	2571
BspTI	CTTAAG	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	2421
BsrDI	GCAATG	2 cut(s)	1250, 1305
BsrFI	RCCGGY	2 cut(s)	1287, 1725
BsrGI	TGTACA	2 cut(s)	339, 873
BsrI	ACTGG	7 cut(s)	47, 96, 857, 1358, 1690, 1777, 1815
BssAI	RCCGGY	2 cut(s)	1287, 1725
BssECI	CCNNGG	3 cut(s)	553, 1186, 2473
BssMI	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
BssT1I	CCWWGG	3 cut(s)	553, 1186, 2473
Bst2UI	CCWGG	1 cut(s)	2440
Bst4CI	ACNGT	5 cut(s)	74, 226, 1071, 1102, 2320
Bst6I	CTCTTC	4 cut(s)	111, 131, 2571, 2692
BstAFI	CTTAAG	1 cut(s)	905
BstAPI	GCANNNNNTGC	2 cut(s)	1840, 2514
BstAUI	TGTACA	2 cut(s)	339, 873
BstBAI	YACGTR	1 cut(s)	2126
BstEII	GGTNACC	1 cut(s)	1757
BstENI	CCTNNNNNAGG	2 cut(s)	362, 1902
BstF5I	GGATG	2 cut(s)	1123, 2421
BstH2I	RGCGCY	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	595
BstKTI	GATC	9 cut(s)	451, 526, 814, 1261, 1414, 1602, 1980, 2134, 2164
BstMAI	GTCTC	3 cut(s)	215, 999, 2421
BstMBI	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
BstMWI	GCNNNNNNNGC	7 cut(s)	395, 657, 1151, 1232, 1493, 1840, 2514
BstNI	CCWGG	1 cut(s)	2440
BstNSI	RCATGY	6 cut(s)	315, 1725, 1847, 2235, 2288, 2503
BstPI	GGTNACC	1 cut(s)	1757
BstSCI	CCNGG	1 cut(s)	2438
BstSFI	CTRYAG	1 cut(s)	1536
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	7 cut(s)	355, 406, 601, 1108, 1111, 1980, 2116
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	5 cut(s)	448, 523, 1258, 1411, 1599
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	5 cut(s)	448, 523, 1258, 1411, 1599
Bsu15I	ATCGAT	2 cut(s)	810, 2636
Bsu36I	CCTNAGG	2 cut(s)	359, 1899
BsuI	GTATCC	1 cut(s)	2194
BsuRI	GGCC	7 cut(s)	287, 354, 628, 1281, 1729, 1909, 2384
BsuTUI	ATCGAT	2 cut(s)	810, 2636
BtsCI	GGATG	2 cut(s)	1123, 2421
BtsI	GCAGTG	1 cut(s)	1029
BtsIMutI	CAGTG	5 cut(s)	103, 1029, 1098, 1808, 2325
BveI	ACCTGC	1 cut(s)	2499
CaiI	CAGNNNCTG	3 cut(s)	1353, 1910, 2514
CciI	TCATGA	1 cut(s)	1312
CfoI	GCGC	1 cut(s)	595
Cfr10I	RCCGGY	2 cut(s)	1287, 1725
Cfr13I	GGNCC	4 cut(s)	43, 352, 1907, 2459
ClaI	ATCGAT	2 cut(s)	810, 2636
Csp6I	GTAC	5 cut(s)	93, 340, 874, 2282, 2512
CspAI	ACCGGT	1 cut(s)	1287
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviQI	GTAC	5 cut(s)	93, 340, 874, 2282, 2512
DpnI	GATC	9 cut(s)	450, 525, 813, 1260, 1413, 1601, 1979, 2133, 2163
DpnII	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
DraI	TTTAAA	1 cut(s)	465
DraIII	CACNNNGTG	1 cut(s)	2126
DriI	GACNNNNNGTC	2 cut(s)	688, 2434
Eam1104I	CTCTTC	4 cut(s)	111, 131, 2571, 2692
Eam1105I	GACNNNNNGTC	2 cut(s)	688, 2434
EarI	CTCTTC	4 cut(s)	111, 131, 2571, 2692
Eco130I	CCWWGG	3 cut(s)	553, 1186, 2473
Eco31I	GGTCTC	1 cut(s)	2421
Eco32I	GATATC	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	43, 2459
Eco57I	CTGAAG	2 cut(s)	660, 2595
Eco81I	CCTNAGG	2 cut(s)	359, 1899
Eco91I	GGTNACC	1 cut(s)	1757
EcoNI	CCTNNNNNAGG	2 cut(s)	362, 1902
EcoO109I	RGGNCCY	2 cut(s)	43, 1907
EcoO65I	GGTNACC	1 cut(s)	1757
EcoRI	GAATTC	1 cut(s)	2010
EcoRII	CCWGG	1 cut(s)	2438
EcoRV	GATATC	1 cut(s)	808
EcoT14I	CCWWGG	3 cut(s)	553, 1186, 2473
EcoT22I	ATGCAT	3 cut(s)	313, 1237, 1845
ErhI	CCWWGG	3 cut(s)	553, 1186, 2473
FalI	AAGNNNNNCTT	4 cut(s)	250, 282, 1476, 1508
FaqI	GGGAC	4 cut(s)	56, 1364, 1412, 1589
FauI	CCCGC	1 cut(s)	424
FauNDI	CATATG	3 cut(s)	1165, 1237, 2166
FblI	GTMKAC	3 cut(s)	564, 1095, 1360
Fnu4HI	GCNGC	8 cut(s)	355, 369, 420, 615, 1122, 1125, 1994, 2105
FokI	GGATG	2 cut(s)	1130, 2428
Fsp4HI	GCNGC	8 cut(s)	355, 369, 420, 615, 1122, 1125, 1994, 2105
FspBI	CTAG	6 cut(s)	90, 431, 459, 719, 1187, 2691
GlaI	GCGC	1 cut(s)	594
GluI	GCNGC	8 cut(s)	355, 369, 420, 615, 1122, 1125, 1994, 2105
GsaI	CCCAGC	1 cut(s)	2111
GsuI	CTGGAG	3 cut(s)	1624, 1908, 2501
HaeII	RGCGCY	1 cut(s)	596
HaeIII	GGCC	7 cut(s)	287, 354, 628, 1281, 1729, 1909, 2384
HapII	CCGG	4 cut(s)	243, 1288, 1415, 1726
HhaI	GCGC	1 cut(s)	595
Hin6I	GCGC	1 cut(s)	593
HinP1I	GCGC	1 cut(s)	593
HindIII	AAGCTT	2 cut(s)	467, 510
HpaII	CCGG	4 cut(s)	243, 1288, 1415, 1726
HphI	GGTGA	2 cut(s)	908, 2534
Hpy166II	GTNNAC	5 cut(s)	77, 565, 1096, 1361, 2469
Hpy188I	TCNGA	8 cut(s)	202, 304, 393, 571, 1038, 2389, 2412, 2711
Hpy8I	GTNNAC	5 cut(s)	77, 565, 1096, 1361, 2469
HpyCH4III	ACNGT	5 cut(s)	74, 226, 1071, 1102, 2320
HpyCH4IV	ACGT	2 cut(s)	1363, 2125
HpyF10VI	GCNNNNNNNGC	7 cut(s)	395, 657, 1151, 1232, 1493, 1840, 2514
HpySE526I	ACGT	2 cut(s)	1363, 2125
HspAI	GCGC	1 cut(s)	593
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	1414
KroI	GCCGGC	1 cut(s)	1725
KroNI	GCCGGC	1 cut(s)	1727
Kzo9I	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
LguI	GCTCTTC	1 cut(s)	2571
LmnI	GCTCC	4 cut(s)	541, 1492, 1852, 2101
Lsp1109I	GCAGC	7 cut(s)	355, 406, 601, 1108, 1111, 1980, 2116
LweI	GCATC	9 cut(s)	193, 229, 567, 856, 1108, 1195, 1222, 1543, 2642
MaeI	CTAG	6 cut(s)	90, 431, 459, 719, 1187, 2691
MaeII	ACGT	2 cut(s)	1363, 2125
MaeIII	GTNAC	4 cut(s)	704, 1744, 1757, 2263
MalI	GATC	9 cut(s)	450, 525, 813, 1260, 1413, 1601, 1979, 2133, 2163
MboI	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
MfeI	CAATTG	1 cut(s)	921
MflI	RGATCY	5 cut(s)	448, 523, 1258, 1411, 1599
MhlI	GDGCHC	1 cut(s)	319
MlyI	GAGTC	5 cut(s)	293, 383, 698, 2428, 2492
MmeI	TCCRAC	4 cut(s)	210, 276, 2094, 2690
Mph1103I	ATGCAT	3 cut(s)	313, 1237, 1845
MroI	TCCGGA	1 cut(s)	1414
MroNI	GCCGGC	1 cut(s)	1725
MroXI	GAANNNNTTC	1 cut(s)	2361
MseI	TTAA	8 cut(s)	443, 464, 792, 906, 1251, 1962, 2640, 2655
MslI	CAYNNNNRTG	1 cut(s)	1506
MspA1I	CMGCKG	2 cut(s)	419, 2107
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	4 cut(s)	243, 1288, 1415, 1726
MspR9I	CCNGG	1 cut(s)	2440
MunI	CAATTG	1 cut(s)	921
Mva1269I	GAATGC	4 cut(s)	313, 400, 431, 1877
MvaI	CCWGG	1 cut(s)	2440
MwoI	GCNNNNNNNGC	7 cut(s)	395, 657, 1151, 1232, 1493, 1840, 2514
NaeI	GCCGGC	1 cut(s)	1727
NdeI	CATATG	3 cut(s)	1165, 1237, 2166
NdeII	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
NgoMIV	GCCGGC	1 cut(s)	1725
NlaIV	GGNNCC	3 cut(s)	44, 45, 2118
NsiI	ATGCAT	3 cut(s)	313, 1237, 1845
NspI	RCATGY	6 cut(s)	315, 1725, 1847, 2235, 2288, 2503
PaeI	GCATGC	1 cut(s)	1725
PagI	TCATGA	1 cut(s)	1312
PciI	ACATGT	2 cut(s)	2231, 2499
PciSI	GCTCTTC	1 cut(s)	2571
PctI	GAATGC	4 cut(s)	313, 400, 431, 1877
PdiI	GCCGGC	1 cut(s)	1727
PdmI	GAANNNNTTC	1 cut(s)	2361
PfeI	GAWTC	8 cut(s)	63, 1265, 1797, 1805, 1817, 1826, 2237, 2618
PflFI	GACNNNGTC	1 cut(s)	1580
PinAI	ACCGGT	1 cut(s)	1287
PkrI	GCNGC	8 cut(s)	356, 370, 421, 616, 1123, 1126, 1995, 2106
PleI	GAGTC	5 cut(s)	293, 382, 697, 2427, 2491
PpsI	GAGTC	5 cut(s)	293, 382, 697, 2427, 2491
Ppu21I	YACGTR	1 cut(s)	2126
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	2 cut(s)	2231, 2499
PsiI	TTATAA	2 cut(s)	549, 849
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	2438
PspEI	GGTNACC	1 cut(s)	1757
PspFI	CCCAGC	1 cut(s)	2107
PspGI	CCWGG	1 cut(s)	2438
PspN4I	GGNNCC	3 cut(s)	44, 45, 2118
PspPI	GGNCC	4 cut(s)	43, 352, 1907, 2459
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1540
PstNI	CAGNNNCTG	3 cut(s)	1353, 1910, 2514
PsuI	RGATCY	5 cut(s)	448, 523, 1258, 1411, 1599
PsyI	GACNNNGTC	1 cut(s)	1580
PvuII	CAGCTG	1 cut(s)	2107
RsaI	GTAC	5 cut(s)	94, 341, 875, 2283, 2513
RsaNI	GTAC	5 cut(s)	93, 340, 874, 2282, 2512
RseI	CAYNNNNRTG	1 cut(s)	1506
SapI	GCTCTTC	1 cut(s)	2571
SaqAI	TTAA	8 cut(s)	443, 464, 792, 906, 1251, 1962, 2640, 2655
SatI	GCNGC	8 cut(s)	355, 369, 420, 615, 1122, 1125, 1994, 2105
Sau3AI	GATC	9 cut(s)	448, 523, 811, 1258, 1411, 1599, 1977, 2131, 2161
Sau96I	GGNCC	4 cut(s)	43, 352, 1907, 2459
SchI	GAGTC	5 cut(s)	293, 383, 698, 2428, 2492
ScrFI	CCNGG	1 cut(s)	2440
SduI	GDGCHC	1 cut(s)	319
SfaNI	GCATC	9 cut(s)	193, 229, 567, 856, 1108, 1195, 1222, 1543, 2642
SfcI	CTRYAG	1 cut(s)	1536
SinI	GGWCC	2 cut(s)	43, 2459
SmiMI	CAYNNNNRTG	1 cut(s)	1506
SmlI	CTYRAG	2 cut(s)	483, 905
SmoI	CTYRAG	2 cut(s)	483, 905
SpeI	ACTAGT	1 cut(s)	458
SphI	GCATGC	1 cut(s)	1725
SsiI	CCGC	3 cut(s)	355, 417, 1169
SspI	AATATT	1 cut(s)	1216
SspMI	CTAG	6 cut(s)	90, 431, 459, 719, 1187, 2691
StyD4I	CCNGG	1 cut(s)	2438
StyI	CCWWGG	3 cut(s)	553, 1186, 2473
TaaI	ACNGT	5 cut(s)	74, 226, 1071, 1102, 2320
TaiI	ACGT	2 cut(s)	1366, 2128
TaqI	TCGA	3 cut(s)	810, 1861, 2636
TatI	WGTACW	3 cut(s)	339, 873, 2281
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	8 cut(s)	63, 1265, 1797, 1805, 1817, 1826, 2237, 2618
Tru1I	TTAA	8 cut(s)	443, 464, 792, 906, 1251, 1962, 2640, 2655
Tru9I	TTAA	8 cut(s)	443, 464, 792, 906, 1251, 1962, 2640, 2655
TscAI	CASTG	5 cut(s)	103, 1029, 1105, 1815, 2325
TseI	GCWGC	7 cut(s)	368, 419, 614, 1121, 1124, 1993, 2104
TspDTI	ATGAA	8 cut(s)	396, 522, 948, 1301, 1316, 1329, 1518, 1641
TspGWI	ACGGA	2 cut(s)	26, 296
TspRI	CASTG	5 cut(s)	103, 1029, 1105, 1815, 2325
Tth111I	GACNNNGTC	1 cut(s)	1580
Vha464I	CTTAAG	1 cut(s)	905
VpaK11BI	GGWCC	2 cut(s)	43, 2459
XagI	CCTNNNNNAGG	2 cut(s)	362, 1902
XapI	RAATTY	3 cut(s)	733, 2010, 2029
XceI	RCATGY	6 cut(s)	315, 1725, 1847, 2235, 2288, 2503
XmaJI	CCTAGG	1 cut(s)	1186
XmiI	GTMKAC	3 cut(s)	564, 1095, 1360
XmnI	GAANNNNTTC	1 cut(s)	2361
XspI	CTAG	6 cut(s)	90, 431, 459, 719, 1187, 2691
Zsp2I	ATGCAT	3 cut(s)	313, 1237, 1845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.