Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

18812724 .. 18825846

Gene Structure 13123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG193600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGCTTGGACGGATAAGGATGGTTGTAATGGGAAAGAAGGGGACCCAGTTGTAGAGAATGGATTCTTGAACTGTTCGCAGCCTTCTCCTAGTACCAGTGGCTCTCTTCTTGCTGGTGCAACTCCCGAAGGGGGGAAGAGTTTTGAAGTGAAAGAGACGATTTCTTATGCCAACATTCTTCGTTCAAGGAACAAGTTTTCTGATGCTCTTAGTCTTTATGAGACTGTGTTGGACAAAGATGCCAGAAATGTGGAAGCTCATATTGGGAAAGGAATATGCTTGCAAATGAAGAATATGGGAAGGCTTGCTTTTGACAGTTTCACGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCGCCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCAGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTGCTGGCAACACTCAAGATGGATTGCAGAAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTGTAATTTCATATTCTTCCAACTTTCTAACGTTTCTGCCCTTCTTTTTCTTGTTTAACATATTCGTATTGTATCTACCTCTGTCAATGCAGCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCATATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTGCTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAATTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTACAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGACAGAGACAACCTTGATAAAGCAGTGGAGTGTTATCAGATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATAATTGCAAATCCCACATATGCAGAAGCATATAACAACCTAGGGGTTCTTTACAGAGATGCTGGCAATATTTCTCTGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAATGCAGGCCAGAACCGGTTGCTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGTTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCGGAACGTCCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGACAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTCGCAAGCATTGTTAGGGAAGATAAGATTGATATCTTGGTGGAACTTACTGGTCATACTGCTAACAACAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCAATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAAGCAGAAGCATGTTGAGCAGCTAGTTCGATTACCAGAATGCTTCCTTTGTTATACACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTCGCAAAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCTCGCCTTGTAGTAAAATGTAAGCCCTTTAGTTGCGATAGTGTGAGAGAGAGATTTCTTTCAACATTGGAGCAGCTGGGGTTGGAACCACTACGTGTTGATCTTCTGCCTCTAATTTTACTCAATTACGATCATATGCAAGCATATTCTCTCATGGACATTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

775

Amino Acids

86.8

Weight (kDa)

5.84

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	225 - 249	1.5e-06	Tetratricopeptide repeat
TPR_1	PF00515	257 - 290	6.8e-10	Tetratricopeptide repeat
TPR_2	PF07719	257 - 289	7e-07	Tetratricopeptide repeat
TPR_8	PF13181	257 - 289	5.6e-08	Tetratricopeptide repeat
TPR_12	PF13424	257 - 325	8.1e-07	Tetratricopeptide repeat
TPR_1	PF00515	366 - 399	7.5e-10	Tetratricopeptide repeat
TPR_2	PF07719	366 - 398	3e-06	Tetratricopeptide repeat
TPR_11	PF13414	375 - 413	2.4e-06	TPR repeat
TPR_12	PF13424	401 - 464	1.6e-08	Tetratricopeptide repeat
TPR_16	PF13432	412 - 467	9e-07	Tetratricopeptide repeat
TPR_1	PF00515	434 - 466	1.3e-09	Tetratricopeptide repeat
TPR_2	PF07719	434 - 466	3.6e-07	Tetratricopeptide repeat
TPR_8	PF13181	434 - 466	2.4e-07	Tetratricopeptide repeat
Glyco_transf_41	PF13844	513 - 670	4.5e-23	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	681, 981
AccI	GTMKAC	3 cut(s)	696, 1227, 1492
AccIII	TCCGGA	1 cut(s)	1546
AciI	CCGC	2 cut(s)	397, 459
AclI	AACGTT	1 cut(s)	608
AclWI	GGATC	4 cut(s)	560, 1385, 1538, 1739
AcsI	RAATTY	3 cut(s)	865, 2139, 2158
AcuI	CTGAAG	1 cut(s)	792
AdeI	CACNNNGTG	1 cut(s)	2255
AfaI	GTAC	3 cut(s)	94, 383, 1007
AfiI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 2033
AflII	CTTAAG	1 cut(s)	1037
AflIII	ACRYGT	1 cut(s)	2254
AgeI	ACCGGT	1 cut(s)	1419
AgsI	TTSAA	9 cut(s)	70, 146, 186, 559, 1084, 1210, 1720, 1962, 2223
AhdI	GACNNNNNGTC	1 cut(s)	820
AhlI	ACTAGT	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 278, 734, 766
AloI	GAACNNNNNNTCC	2 cut(s)	1059, 1091
AluBI	AGCT	9 cut(s)	257, 511, 554, 854, 1277, 1619, 1984, 2057, 2236
AluI	AGCT	9 cut(s)	257, 511, 554, 854, 1277, 1619, 1984, 2057, 2236
Alw26I	GTCTC	3 cut(s)	149, 215, 1131
AlwI	GGATC	4 cut(s)	560, 1385, 1538, 1739
AlwNI	CAGNNNCTG	2 cut(s)	1485, 2039
Aor13HI	TCCGGA	1 cut(s)	1546
AoxI	GGCC	6 cut(s)	327, 394, 758, 1411, 1859, 2036
ApoI	RAATTY	3 cut(s)	865, 2139, 2158
AsiGI	ACCGGT	1 cut(s)	1419
Asp700I	GAANNNNTTC	1 cut(s)	62
AspA2I	CCTAGG	1 cut(s)	1318
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	3 cut(s)	43, 394, 2036
AsuHPI	GGTGA	1 cut(s)	1040
AvaII	GGWCC	1 cut(s)	43
AvrII	CCTAGG	1 cut(s)	1318
AxyI	CCTNAGG	2 cut(s)	401, 2028
BaeGI	GKGCMC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	566
BccI	CCATC	5 cut(s)	14, 338, 524, 1165, 1240
BceAI	ACGGC	1 cut(s)	738
BcgI	CGANNNNNNTGC	2 cut(s)	1970, 2004
BcoDI	GTCTC	3 cut(s)	149, 215, 1131
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	6 cut(s)	90, 473, 501, 851, 1319, 1985
BfmI	CTRYAG	1 cut(s)	1668
BfoI	RGCGCY	1 cut(s)	728
BfrI	CTTAAG	1 cut(s)	1037
BglII	AGATCT	1 cut(s)	490
BlnI	CCTAGG	1 cut(s)	1318
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmgT120I	GGNCC	3 cut(s)	43, 394, 2036
BmiI	GGNNCC	3 cut(s)	44, 45, 2247
BmrI	ACTGGG	2 cut(s)	41, 1495
BmsI	GCATC	8 cut(s)	193, 229, 699, 988, 1240, 1327, 1354, 1675
BmuI	ACTGGG	2 cut(s)	41, 1495
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	2 cut(s)	1756, 2037
BpuEI	CTTGAG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	942
BsaAI	YACGTR	1 cut(s)	2255
BsaBI	GATNNNNATC	3 cut(s)	942, 1573, 1799
BsaJI	CCNNGG	2 cut(s)	685, 1318
BsaWI	WCCGGW	2 cut(s)	1419, 1546
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 2033
Bse118I	RCCGGY	2 cut(s)	1419, 1857
Bse1I	ACTGG	7 cut(s)	47, 96, 989, 1490, 1822, 1909, 1947
Bse21I	CCTNAGG	2 cut(s)	401, 2028
Bse3DI	GCAATG	2 cut(s)	1382, 1437
Bse8I	GATNNNNATC	3 cut(s)	942, 1573, 1799
BseAI	TCCGGA	1 cut(s)	1546
BseCI	ATCGAT	1 cut(s)	942
BseDI	CCNNGG	2 cut(s)	685, 1318
BseGI	GGATG	2 cut(s)	25, 1255
BseJI	GATNNNNATC	3 cut(s)	942, 1573, 1799
BseLI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 2033
BseMI	GCAATG	2 cut(s)	1382, 1437
BseMII	CTCAG	4 cut(s)	357, 405, 2019, 2160
BseNI	ACTGG	7 cut(s)	47, 96, 989, 1490, 1822, 1909, 1947
BseRI	GAGGAG	1 cut(s)	1611
BseSI	GKGCMC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	2236
BsgI	GTGCAG	2 cut(s)	1116, 1848
BshFI	GGCC	6 cut(s)	329, 396, 760, 1413, 1861, 2038
BshTI	ACCGGT	1 cut(s)	1419
BshVI	ATCGAT	1 cut(s)	942
BsiSI	CCGG	3 cut(s)	1420, 1547, 1858
BslFI	GGGAC	5 cut(s)	56, 1496, 1539, 1544, 1721
BslI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 2033
BsmAI	GTCTC	3 cut(s)	149, 215, 1131
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	5 cut(s)	56, 1496, 1539, 1544, 1721
BsmI	GAATGC	4 cut(s)	355, 442, 473, 2006
BsnI	GGCC	6 cut(s)	329, 396, 760, 1413, 1861, 2038
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp13I	TCCGGA	1 cut(s)	1546
Bsp1407I	TGTACA	2 cut(s)	381, 1005
Bsp143I	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
BspACI	CCGC	2 cut(s)	397, 459
BspANI	GGCC	6 cut(s)	329, 396, 760, 1413, 1861, 2038
BspCNI	CTCAG	4 cut(s)	356, 406, 2020, 2159
BspDI	ATCGAT	1 cut(s)	942
BspEI	TCCGGA	1 cut(s)	1546
BspHI	TCATGA	1 cut(s)	1444
BspLI	GGNNCC	3 cut(s)	44, 45, 2247
BspMAI	CTGCAG	1 cut(s)	1672
BspPI	GGATC	4 cut(s)	560, 1385, 1538, 1739
BspTI	CTTAAG	1 cut(s)	1037
BsrDI	GCAATG	2 cut(s)	1382, 1437
BsrFI	RCCGGY	2 cut(s)	1419, 1857
BsrGI	TGTACA	2 cut(s)	381, 1005
BsrI	ACTGG	7 cut(s)	47, 96, 989, 1490, 1822, 1909, 1947
BssAI	RCCGGY	2 cut(s)	1419, 1857
BssECI	CCNNGG	2 cut(s)	685, 1318
BssMI	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
BssT1I	CCWWGG	2 cut(s)	685, 1318
Bst4CI	ACNGT	5 cut(s)	74, 226, 317, 1203, 1234
Bst6I	CTCTTC	2 cut(s)	111, 131
BstAFI	CTTAAG	1 cut(s)	1037
BstAUI	TGTACA	2 cut(s)	381, 1005
BstBAI	YACGTR	1 cut(s)	2255
BstDEI	CTNAG	8 cut(s)	209, 343, 401, 414, 1558, 1689, 2028, 2146
BstEII	GGTNACC	1 cut(s)	1889
BstENI	CCTNNNNNAGG	2 cut(s)	404, 2031
BstF5I	GGATG	2 cut(s)	25, 1255
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	9 cut(s)	493, 568, 946, 1393, 1546, 1734, 2109, 2263, 2293
BstMAI	GTCTC	3 cut(s)	149, 215, 1131
BstMBI	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
BstMWI	GCNNNNNNNGC	6 cut(s)	437, 789, 1283, 1364, 1625, 1978
BstNSI	RCATGY	3 cut(s)	357, 1857, 1976
BstPI	GGTNACC	1 cut(s)	1889
BstSFI	CTRYAG	1 cut(s)	1668
BstSLI	GKGCMC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	5 cut(s)	490, 565, 1390, 1543, 1731
BstXI	CCANNNNNNTGG	2 cut(s)	250, 337
BstYI	RGATCY	5 cut(s)	490, 565, 1390, 1543, 1731
Bsu15I	ATCGAT	1 cut(s)	942
Bsu36I	CCTNAGG	2 cut(s)	401, 2028
BsuRI	GGCC	6 cut(s)	329, 396, 760, 1413, 1861, 2038
BsuTUI	ATCGAT	1 cut(s)	942
BtsCI	GGATG	2 cut(s)	25, 1255
BtsI	GCAGTG	1 cut(s)	1161
BtsIMutI	CAGTG	4 cut(s)	103, 1161, 1230, 1940
CaiI	CAGNNNCTG	2 cut(s)	1485, 2039
CciI	TCATGA	1 cut(s)	1444
CfoI	GCGC	1 cut(s)	727
Cfr10I	RCCGGY	2 cut(s)	1419, 1857
Cfr13I	GGNCC	3 cut(s)	43, 394, 2036
ClaI	ATCGAT	1 cut(s)	942
Csp6I	GTAC	3 cut(s)	93, 382, 1006
CspAI	ACCGGT	1 cut(s)	1419
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	9 cut(s)	354, 787, 1048, 1264, 1445, 1634, 1854, 1973, 2314
CviQI	GTAC	3 cut(s)	93, 382, 1006
DdeI	CTNAG	8 cut(s)	209, 343, 401, 414, 1558, 1689, 2028, 2146
DpnI	GATC	9 cut(s)	492, 567, 945, 1392, 1545, 1733, 2108, 2262, 2292
DpnII	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
DraI	TTTAAA	1 cut(s)	507
DraIII	CACNNNGTG	1 cut(s)	2255
DriI	GACNNNNNGTC	1 cut(s)	820
Eam1104I	CTCTTC	2 cut(s)	111, 131
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	2 cut(s)	111, 131
Eco130I	CCWWGG	2 cut(s)	685, 1318
Eco32I	GATATC	2 cut(s)	940, 1801
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	2 cut(s)	401, 2028
Eco91I	GGTNACC	1 cut(s)	1889
EcoNI	CCTNNNNNAGG	2 cut(s)	404, 2031
EcoO109I	RGGNCCY	2 cut(s)	43, 2036
EcoO65I	GGTNACC	1 cut(s)	1889
EcoRI	GAATTC	1 cut(s)	2139
EcoRV	GATATC	2 cut(s)	940, 1801
EcoT14I	CCWWGG	2 cut(s)	685, 1318
EcoT22I	ATGCAT	2 cut(s)	355, 1369
ErhI	CCWWGG	2 cut(s)	685, 1318
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	9 cut(s)	357, 790, 1051, 1267, 1448, 1637, 1857, 1976, 2317
FalI	AAGNNNNNCTT	4 cut(s)	292, 324, 1608, 1640
FaqI	GGGAC	5 cut(s)	56, 1496, 1539, 1544, 1721
FatI	CATG	9 cut(s)	353, 786, 1047, 1263, 1444, 1633, 1853, 1972, 2313
FauI	CCCGC	1 cut(s)	466
FauNDI	CATATG	3 cut(s)	1297, 1369, 2295
FblI	GTMKAC	3 cut(s)	696, 1227, 1492
FokI	GGATG	2 cut(s)	32, 1262
FspBI	CTAG	6 cut(s)	90, 473, 501, 851, 1319, 1985
GlaI	GCGC	1 cut(s)	726
GsaI	CCCAGC	1 cut(s)	2240
GsuI	CTGGAG	2 cut(s)	1756, 2037
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	6 cut(s)	329, 396, 760, 1413, 1861, 2038
HapII	CCGG	3 cut(s)	1420, 1547, 1858
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	9 cut(s)	357, 790, 1051, 1267, 1448, 1637, 1857, 1976, 2317
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HindIII	AAGCTT	2 cut(s)	509, 552
HinfI	GANTC	9 cut(s)	63, 341, 416, 821, 1397, 1929, 1937, 1949, 1958
HpaII	CCGG	3 cut(s)	1420, 1547, 1858
HphI	GGTGA	1 cut(s)	1040
Hpy166II	GTNNAC	3 cut(s)	697, 1228, 1493
Hpy188I	TCNGA	5 cut(s)	202, 346, 435, 703, 1170
Hpy8I	GTNNAC	3 cut(s)	697, 1228, 1493
HpyCH4III	ACNGT	5 cut(s)	74, 226, 317, 1203, 1234
HpyCH4IV	ACGT	4 cut(s)	608, 1495, 1552, 2254
HpyF10VI	GCNNNNNNNGC	6 cut(s)	437, 789, 1283, 1364, 1625, 1978
HpyF3I	CTNAG	8 cut(s)	209, 343, 401, 414, 1558, 1689, 2028, 2146
HpySE526I	ACGT	4 cut(s)	608, 1495, 1552, 2254
Hsp92II	CATG	9 cut(s)	357, 790, 1051, 1267, 1448, 1637, 1857, 1976, 2317
HspAI	GCGC	1 cut(s)	725
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	1546
KroI	GCCGGC	1 cut(s)	1857
KroNI	GCCGGC	1 cut(s)	1859
Kzo9I	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
LmnI	GCTCC	2 cut(s)	1624, 2230
LweI	GCATC	8 cut(s)	193, 229, 699, 988, 1240, 1327, 1354, 1675
MaeI	CTAG	6 cut(s)	90, 473, 501, 851, 1319, 1985
MaeII	ACGT	4 cut(s)	608, 1495, 1552, 2254
MaeIII	GTNAC	3 cut(s)	836, 1876, 1889
MalI	GATC	9 cut(s)	492, 567, 945, 1392, 1545, 1733, 2108, 2262, 2292
MboI	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
MboII	GAAGA	8 cut(s)	98, 148, 170, 301, 571, 585, 1799, 2255
MfeI	CAATTG	2 cut(s)	1053, 1917
MflI	RGATCY	5 cut(s)	490, 565, 1390, 1543, 1731
MhlI	GDGCHC	1 cut(s)	361
MlyI	GAGTC	3 cut(s)	335, 425, 830
MmeI	TCCRAC	4 cut(s)	210, 318, 621, 2223
Mph1103I	ATGCAT	2 cut(s)	355, 1369
MroI	TCCGGA	1 cut(s)	1546
MroNI	GCCGGC	1 cut(s)	1857
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	7 cut(s)	485, 506, 633, 924, 1038, 1383, 2091
MslI	CAYNNNNRTG	1 cut(s)	1638
MspA1I	CMGCKG	2 cut(s)	461, 2236
MspCI	CTTAAG	1 cut(s)	1037
MspI	CCGG	3 cut(s)	1420, 1547, 1858
MunI	CAATTG	2 cut(s)	1053, 1917
Mva1269I	GAATGC	4 cut(s)	355, 442, 473, 2006
MwoI	GCNNNNNNNGC	6 cut(s)	437, 789, 1283, 1364, 1625, 1978
NaeI	GCCGGC	1 cut(s)	1859
NdeI	CATATG	3 cut(s)	1297, 1369, 2295
NdeII	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
NgoMIV	GCCGGC	1 cut(s)	1857
NlaIII	CATG	9 cut(s)	357, 790, 1051, 1267, 1448, 1637, 1857, 1976, 2317
NlaIV	GGNNCC	3 cut(s)	44, 45, 2247
NsiI	ATGCAT	2 cut(s)	355, 1369
NspI	RCATGY	3 cut(s)	357, 1857, 1976
PaeI	GCATGC	1 cut(s)	1857
PagI	TCATGA	1 cut(s)	1444
PctI	GAATGC	4 cut(s)	355, 442, 473, 2006
PdiI	GCCGGC	1 cut(s)	1859
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	6 cut(s)	63, 1397, 1929, 1937, 1949, 1958
PflFI	GACNNNGTC	1 cut(s)	1712
PinAI	ACCGGT	1 cut(s)	1419
PleI	GAGTC	3 cut(s)	335, 424, 829
PpsI	GAGTC	3 cut(s)	335, 424, 829
Ppu21I	YACGTR	1 cut(s)	2255
PpuMI	RGGWCCY	1 cut(s)	43
PsiI	TTATAA	2 cut(s)	681, 981
Psp1406I	AACGTT	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	1889
PspFI	CCCAGC	1 cut(s)	2236
PspN4I	GGNNCC	3 cut(s)	44, 45, 2247
PspPI	GGNCC	3 cut(s)	43, 394, 2036
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1672
PstNI	CAGNNNCTG	2 cut(s)	1485, 2039
PsuI	RGATCY	5 cut(s)	490, 565, 1390, 1543, 1731
PsyI	GACNNNGTC	1 cut(s)	1712
PvuII	CAGCTG	1 cut(s)	2236
RsaI	GTAC	3 cut(s)	94, 383, 1007
RsaNI	GTAC	3 cut(s)	93, 382, 1006
RseI	CAYNNNNRTG	1 cut(s)	1638
SaqAI	TTAA	7 cut(s)	485, 506, 633, 924, 1038, 1383, 2091
Sau3AI	GATC	9 cut(s)	490, 565, 943, 1390, 1543, 1731, 2106, 2260, 2290
Sau96I	GGNCC	3 cut(s)	43, 394, 2036
SchI	GAGTC	3 cut(s)	335, 425, 830
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	8 cut(s)	193, 229, 699, 988, 1240, 1327, 1354, 1675
SfcI	CTRYAG	1 cut(s)	1668
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	1638
SmlI	CTYRAG	2 cut(s)	525, 1037
SmoI	CTYRAG	2 cut(s)	525, 1037
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	1857
SsiI	CCGC	2 cut(s)	397, 459
SspI	AATATT	1 cut(s)	1348
SspMI	CTAG	6 cut(s)	90, 473, 501, 851, 1319, 1985
StyI	CCWWGG	2 cut(s)	685, 1318
TaaI	ACNGT	5 cut(s)	74, 226, 317, 1203, 1234
TaiI	ACGT	4 cut(s)	611, 1498, 1555, 2257
TaqI	TCGA	2 cut(s)	942, 1990
TatI	WGTACW	2 cut(s)	381, 1005
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	6 cut(s)	63, 1397, 1929, 1937, 1949, 1958
Tru1I	TTAA	7 cut(s)	485, 506, 633, 924, 1038, 1383, 2091
Tru9I	TTAA	7 cut(s)	485, 506, 633, 924, 1038, 1383, 2091
TscAI	CASTG	4 cut(s)	103, 1161, 1237, 1947
TspGWI	ACGGA	2 cut(s)	26, 338
TspRI	CASTG	4 cut(s)	103, 1161, 1237, 1947
Tth111I	GACNNNGTC	1 cut(s)	1712
Vha464I	CTTAAG	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	2 cut(s)	404, 2031
XapI	RAATTY	3 cut(s)	865, 2139, 2158
XceI	RCATGY	3 cut(s)	357, 1857, 1976
XmaJI	CCTAGG	1 cut(s)	1318
XmiI	GTMKAC	3 cut(s)	696, 1227, 1492
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	6 cut(s)	90, 473, 501, 851, 1319, 1985
Zsp2I	ATGCAT	2 cut(s)	355, 1369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.