Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Reverse (-)

29398894 .. 29407971

Gene Structure 9078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGCTTGGACGGATAAAGATGGTTGTAATGGGAAAGAAGGGGACCCAGTTGTAGAAAATGGATTCTTGAACTGTTCACAGCCTTCTCCTAGTACCAGTGGCTCTCTTCTTGCTGGTGCAACTCCGGAAGGGGGAAGAACTGTGTTGGAGACAGATGCCGGAAATGTGGAAGCTCATATTGGGAAAGGAATATGCTTGCAAATGAAGAATATGGGAAGGCTTGCTTTTGACAGTTTCATGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCGCCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCGGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTTCTGGCAACACTCAAGATGGATTGCAGCAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCATATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTGCTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAACTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTATAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGACAGAGACAACCTTGATAAAGCAATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAGGCTATAATTGCAAATCCCACATATGCAGAAGCATATAACAACCTAGGGGTTCTTTACAGAGATGCTGGCAATATTTCTATGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAATGCAGGCCAGAACCGGTTGCTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGTTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCGGAACGACCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGAGAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTCGCAAGCATTGTTAGGGAAGATAAGATTGATATCTTGGTGGAACTTACCGGTCATACTGCTAACAATAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCGATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAGGCAGAAGCATGTTGAGGAGCTAGTTCGATTACCAGAATGCTTCCTTTGTTATACACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTTGCAAAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCTCGCCTTGTAGTAAAATGTAAGCCCTTTAGTTGCGATAGTGTGAGAGAGAGATTTCTTTCAACATTGGAGCAGCTGGGGTTGGAACCACTACGTGTTGATCTTCTGCCTCTAATTTTACTCAATTACGATCATATGCAAGCATATTCTCTCATGGACATTAGTTTGGATACTTTTCCTTATGCTGGAACAACCACGACATGTGAATCTTTATATATGGGCGTTCCATGTGTTACTATGGCTGGTTCAGTACATGCACACAATGTTGGTGTTAGTATTCTCAGCACAGTGGGATTGGGAAACCTTATTGCTAAAAATGAGGAAGAATATGTTCAGTTGGCTGTGCAGTTGGCCTCTGACATAACAGCACTTTCAAATCTGAGGATGAGTCTGCGAGACCTCATGTTCAGGTCGCCTGTCTGTGATGGACCAAAGTTTACCCTTGGGCTGGAGTCGGCATACAGGAACATGTGGTGCAGGTACTGCAAAGGTGATGTGCCATCACAACGGCACATGGAAATACTACAACAGGAGGTAACCCCTGAAGAGCCAACTACCAAAATTGCTGAACCAATAAGGATTACCGAATCAGGTTTTCCTGCATTGATTAAGTCCAATGGATTTAATCCTTGTCCAACACCTATGCCTAATCTCTCTTCTAGTGAAGAAAATAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

883

Amino Acids

98.0

Weight (kDa)

5.48

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	165 - 191	6.1e-07	Tetratricopeptide repeat
TPR_1	PF00515	199 - 232	8e-10	Tetratricopeptide repeat
TPR_2	PF07719	199 - 231	8.1e-07	Tetratricopeptide repeat
TPR_8	PF13181	199 - 231	6.6e-08	Tetratricopeptide repeat
TPR_12	PF13424	199 - 267	9.8e-07	Tetratricopeptide repeat
TPR_12	PF13424	338 - 401	1.6e-08	Tetratricopeptide repeat
TPR_16	PF13432	349 - 404	1e-05	Tetratricopeptide repeat
TPR_1	PF00515	371 - 403	8.4e-10	Tetratricopeptide repeat
TPR_2	PF07719	371 - 403	2.7e-07	Tetratricopeptide repeat
TPR_8	PF13181	371 - 403	1.5e-07	Tetratricopeptide repeat
Glyco_transf_41	PF13844	450 - 607	5.7e-23	Glycosyl transferase family 41
Glyco_transf_41	PF13844	624 - 803	2.1e-25	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	507, 807
Acc36I	ACCTGC	1 cut(s)	2439
AccI	GTMKAC	3 cut(s)	522, 1038, 1303
AccIII	TCCGGA	2 cut(s)	124, 1357
AciI	CCGC	3 cut(s)	313, 356, 375
AclWI	GGATC	4 cut(s)	476, 1196, 1349, 1550
AcsI	RAATTY	2 cut(s)	1950, 1969
AcuI	CTGAAG	2 cut(s)	618, 2535
AdeI	CACNNNGTG	1 cut(s)	2066
AfaI	GTAC	4 cut(s)	94, 299, 2223, 2453
AfiI	CCNNNNNNNGG	6 cut(s)	131, 319, 322, 1844, 2156, 2419
AflII	CTTAAG	1 cut(s)	863
AflIII	ACRYGT	3 cut(s)	2065, 2171, 2439
AgeI	ACCGGT	2 cut(s)	1230, 1628
AgsI	TTSAA	8 cut(s)	70, 475, 910, 1021, 1531, 1773, 2034, 2346
AhdI	GACNNNNNGTC	1 cut(s)	646
AhlI	ACTAGT	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	4 cut(s)	162, 194, 560, 592
AloI	GAACNNNNNNTCC	2 cut(s)	885, 917
AluBI	AGCT	8 cut(s)	173, 427, 470, 680, 1430, 1795, 1868, 2047
AluI	AGCT	8 cut(s)	173, 427, 470, 680, 1430, 1795, 1868, 2047
Alw26I	GTCTC	3 cut(s)	143, 957, 2361
AlwI	GGATC	4 cut(s)	476, 1196, 1349, 1550
AlwNI	CAGNNNCTG	3 cut(s)	1296, 1850, 2454
Aor13HI	TCCGGA	2 cut(s)	124, 1357
AoxI	GGCC	7 cut(s)	243, 310, 584, 1222, 1670, 1847, 2322
ApeKI	GCWGC	8 cut(s)	326, 377, 454, 572, 1064, 1067, 1933, 2044
ApoI	RAATTY	2 cut(s)	1950, 1969
AsiGI	ACCGGT	2 cut(s)	1230, 1628
Asp700I	GAANNNNTTC	1 cut(s)	2301
AspA2I	CCTAGG	1 cut(s)	1129
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	5 cut(s)	43, 310, 358, 1847, 2399
AsuHPI	GGTGA	2 cut(s)	866, 2474
AvaII	GGWCC	3 cut(s)	43, 358, 2399
AvrII	CCTAGG	1 cut(s)	1129
AxyI	CCTNAGG	2 cut(s)	317, 1839
BaeGI	GKGCMC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	8 cut(s)	313, 364, 466, 559, 1051, 1054, 1920, 2056
BccI	CCATC	6 cut(s)	14, 254, 440, 1051, 2390, 2479
BceAI	ACGGC	2 cut(s)	564, 2495
BciVI	GTATCC	1 cut(s)	2134
BcoDI	GTCTC	3 cut(s)	143, 957, 2361
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	7 cut(s)	90, 389, 417, 677, 1130, 1796, 2631
BfmI	CTRYAG	1 cut(s)	1479
BfoI	RGCGCY	1 cut(s)	554
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	2439
BfuI	GTATCC	1 cut(s)	2134
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	9 cut(s)	313, 327, 378, 455, 573, 1065, 1068, 1934, 2045
BlnI	CCTAGG	1 cut(s)	1129
BlsI	GCNGC	9 cut(s)	314, 328, 379, 456, 574, 1066, 1069, 1935, 2046
Bme18I	GGWCC	3 cut(s)	43, 358, 2399
BmeRI	GACNNNNNGTC	1 cut(s)	646
BmgT120I	GGNCC	5 cut(s)	43, 310, 358, 1847, 2399
BmiI	GGNNCC	4 cut(s)	44, 45, 360, 2058
BmrI	ACTGGG	2 cut(s)	41, 1306
BmsI	GCATC	7 cut(s)	145, 525, 814, 1051, 1138, 1165, 1486
BmuI	ACTGGG	2 cut(s)	41, 1306
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	3 cut(s)	1567, 1848, 2441
BpuEI	CTTGAG	1 cut(s)	426
Bsa29I	ATCGAT	1 cut(s)	768
BsaAI	YACGTR	1 cut(s)	2066
BsaBI	GATNNNNATC	3 cut(s)	768, 1384, 1610
BsaI	GGTCTC	1 cut(s)	2361
BsaJI	CCNNGG	3 cut(s)	511, 1129, 2413
BsaWI	WCCGGW	4 cut(s)	124, 1230, 1357, 1628
Bsc4I	CCNNNNNNNGG	6 cut(s)	131, 319, 322, 1844, 2156, 2419
Bse118I	RCCGGY	3 cut(s)	1230, 1628, 1668
Bse1I	ACTGG	6 cut(s)	47, 96, 815, 1301, 1720, 1758
Bse21I	CCTNAGG	2 cut(s)	317, 1839
Bse3DI	GCAATG	3 cut(s)	987, 1193, 1248
Bse8I	GATNNNNATC	3 cut(s)	768, 1384, 1610
BseAI	TCCGGA	2 cut(s)	124, 1357
BseCI	ATCGAT	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	511, 1129, 2413
BseGI	GGATG	2 cut(s)	1066, 2361
BseJI	GATNNNNATC	3 cut(s)	768, 1384, 1610
BseLI	CCNNNNNNNGG	6 cut(s)	131, 319, 322, 1844, 2156, 2419
BseMI	GCAATG	3 cut(s)	987, 1193, 1248
BseMII	CTCAG	6 cut(s)	273, 321, 1830, 1971, 2266, 2342
BseNI	ACTGG	6 cut(s)	47, 96, 815, 1301, 1720, 1758
BseRI	GAGGAG	2 cut(s)	1422, 1805
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	8 cut(s)	313, 364, 466, 559, 1051, 1054, 1920, 2056
BseYI	CCCAGC	1 cut(s)	2047
BsgI	GTGCAG	4 cut(s)	942, 1659, 2336, 2467
BshFI	GGCC	7 cut(s)	245, 312, 586, 1224, 1672, 1849, 2324
BshTI	ACCGGT	2 cut(s)	1230, 1628
BshVI	ATCGAT	1 cut(s)	768
BsiSI	CCGG	6 cut(s)	125, 159, 1231, 1358, 1629, 1669
BslFI	GGGAC	3 cut(s)	56, 1307, 1355
BslI	CCNNNNNNNGG	6 cut(s)	131, 319, 322, 1844, 2156, 2419
BsmAI	GTCTC	3 cut(s)	143, 957, 2361
BsmFI	GGGAC	3 cut(s)	56, 1307, 1355
BsmI	GAATGC	4 cut(s)	271, 358, 389, 1817
BsnI	GGCC	7 cut(s)	245, 312, 586, 1224, 1672, 1849, 2324
Bso31I	GGTCTC	1 cut(s)	2361
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp13I	TCCGGA	2 cut(s)	124, 1357
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
BspACI	CCGC	3 cut(s)	313, 356, 375
BspANI	GGCC	7 cut(s)	245, 312, 586, 1224, 1672, 1849, 2324
BspCNI	CTCAG	6 cut(s)	272, 322, 1831, 1970, 2265, 2343
BspDI	ATCGAT	1 cut(s)	768
BspEI	TCCGGA	2 cut(s)	124, 1357
BspHI	TCATGA	1 cut(s)	1255
BspLI	GGNNCC	4 cut(s)	44, 45, 360, 2058
BspMAI	CTGCAG	1 cut(s)	1483
BspMI	ACCTGC	1 cut(s)	2439
BspPI	GGATC	4 cut(s)	476, 1196, 1349, 1550
BspQI	GCTCTTC	1 cut(s)	2511
BspTI	CTTAAG	1 cut(s)	863
BspTNI	GGTCTC	1 cut(s)	2361
BsrDI	GCAATG	3 cut(s)	987, 1193, 1248
BsrFI	RCCGGY	3 cut(s)	1230, 1628, 1668
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	6 cut(s)	47, 96, 815, 1301, 1720, 1758
BssAI	RCCGGY	3 cut(s)	1230, 1628, 1668
BssECI	CCNNGG	3 cut(s)	511, 1129, 2413
BssMI	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
BssT1I	CCWWGG	3 cut(s)	511, 1129, 2413
Bst4CI	ACNGT	6 cut(s)	74, 142, 233, 1014, 1045, 2260
Bst6I	CTCTTC	3 cut(s)	111, 2511, 2632
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	2454
BstAUI	TGTACA	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	2066
BstDEI	CTNAG	9 cut(s)	259, 317, 330, 1369, 1500, 1839, 1957, 2252, 2351
BstEII	GGTNACC	2 cut(s)	1700, 2506
BstENI	CCTNNNNNAGG	2 cut(s)	320, 1842
BstF5I	GGATG	2 cut(s)	1066, 2361
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	9 cut(s)	409, 484, 772, 1204, 1357, 1545, 1920, 2074, 2104
BstMAI	GTCTC	3 cut(s)	143, 957, 2361
BstMBI	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
BstMWI	GCNNNNNNNGC	6 cut(s)	353, 615, 1094, 1175, 1436, 2454
BstNSI	RCATGY	6 cut(s)	273, 1668, 1787, 2175, 2228, 2443
BstPI	GGTNACC	2 cut(s)	1700, 2506
BstSFI	CTRYAG	1 cut(s)	1479
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	8 cut(s)	313, 364, 466, 559, 1051, 1054, 1920, 2056
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	5 cut(s)	406, 481, 1201, 1354, 1542
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	5 cut(s)	406, 481, 1201, 1354, 1542
Bsu15I	ATCGAT	1 cut(s)	768
Bsu36I	CCTNAGG	2 cut(s)	317, 1839
BsuI	GTATCC	1 cut(s)	2134
BsuRI	GGCC	7 cut(s)	245, 312, 586, 1224, 1672, 1849, 2324
BsuTUI	ATCGAT	1 cut(s)	768
BtsCI	GGATG	2 cut(s)	1066, 2361
BtsIMutI	CAGTG	4 cut(s)	103, 1041, 1751, 2265
BveI	ACCTGC	1 cut(s)	2439
CaiI	CAGNNNCTG	3 cut(s)	1296, 1850, 2454
CciI	TCATGA	1 cut(s)	1255
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	3 cut(s)	1230, 1628, 1668
Cfr13I	GGNCC	5 cut(s)	43, 310, 358, 1847, 2399
ClaI	ATCGAT	1 cut(s)	768
Csp6I	GTAC	4 cut(s)	93, 298, 2222, 2452
CspAI	ACCGGT	2 cut(s)	1230, 1628
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviQI	GTAC	4 cut(s)	93, 298, 2222, 2452
DdeI	CTNAG	9 cut(s)	259, 317, 330, 1369, 1500, 1839, 1957, 2252, 2351
DpnI	GATC	9 cut(s)	408, 483, 771, 1203, 1356, 1544, 1919, 2073, 2103
DpnII	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
DraI	TTTAAA	1 cut(s)	423
DraIII	CACNNNGTG	1 cut(s)	2066
DriI	GACNNNNNGTC	1 cut(s)	646
Eam1104I	CTCTTC	3 cut(s)	111, 2511, 2632
Eam1105I	GACNNNNNGTC	1 cut(s)	646
EarI	CTCTTC	3 cut(s)	111, 2511, 2632
Eco130I	CCWWGG	3 cut(s)	511, 1129, 2413
Eco31I	GGTCTC	1 cut(s)	2361
Eco32I	GATATC	2 cut(s)	766, 1612
Eco47I	GGWCC	3 cut(s)	43, 358, 2399
Eco57I	CTGAAG	2 cut(s)	618, 2535
Eco81I	CCTNAGG	2 cut(s)	317, 1839
Eco91I	GGTNACC	2 cut(s)	1700, 2506
EcoNI	CCTNNNNNAGG	2 cut(s)	320, 1842
EcoO109I	RGGNCCY	2 cut(s)	43, 1847
EcoO65I	GGTNACC	2 cut(s)	1700, 2506
EcoRI	GAATTC	1 cut(s)	1950
EcoRV	GATATC	2 cut(s)	766, 1612
EcoT14I	CCWWGG	3 cut(s)	511, 1129, 2413
EcoT22I	ATGCAT	2 cut(s)	271, 1180
ErhI	CCWWGG	3 cut(s)	511, 1129, 2413
FalI	AAGNNNNNCTT	4 cut(s)	208, 240, 1419, 1451
FaqI	GGGAC	3 cut(s)	56, 1307, 1355
FauI	CCCGC	1 cut(s)	382
FauNDI	CATATG	3 cut(s)	1108, 1180, 2106
FblI	GTMKAC	3 cut(s)	522, 1038, 1303
Fnu4HI	GCNGC	9 cut(s)	313, 327, 378, 455, 573, 1065, 1068, 1934, 2045
FokI	GGATG	2 cut(s)	1073, 2368
Fsp4HI	GCNGC	9 cut(s)	313, 327, 378, 455, 573, 1065, 1068, 1934, 2045
FspBI	CTAG	7 cut(s)	90, 389, 417, 677, 1130, 1796, 2631
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	9 cut(s)	313, 327, 378, 455, 573, 1065, 1068, 1934, 2045
GsaI	CCCAGC	1 cut(s)	2051
GsuI	CTGGAG	3 cut(s)	1567, 1848, 2441
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	7 cut(s)	245, 312, 586, 1224, 1672, 1849, 2324
HapII	CCGG	6 cut(s)	125, 159, 1231, 1358, 1629, 1669
HhaI	GCGC	1 cut(s)	553
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	2 cut(s)	425, 468
HpaII	CCGG	6 cut(s)	125, 159, 1231, 1358, 1629, 1669
HphI	GGTGA	2 cut(s)	866, 2474
Hpy166II	GTNNAC	5 cut(s)	77, 523, 1039, 1304, 2409
Hpy188I	TCNGA	6 cut(s)	262, 351, 529, 2329, 2352, 2651
Hpy8I	GTNNAC	5 cut(s)	77, 523, 1039, 1304, 2409
HpyCH4III	ACNGT	6 cut(s)	74, 142, 233, 1014, 1045, 2260
HpyCH4IV	ACGT	2 cut(s)	1306, 2065
HpyF10VI	GCNNNNNNNGC	6 cut(s)	353, 615, 1094, 1175, 1436, 2454
HpyF3I	CTNAG	9 cut(s)	259, 317, 330, 1369, 1500, 1839, 1957, 2252, 2351
HpySE526I	ACGT	2 cut(s)	1306, 2065
HspAI	GCGC	1 cut(s)	551
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	2 cut(s)	124, 1357
KroI	GCCGGC	1 cut(s)	1668
KroNI	GCCGGC	1 cut(s)	1670
Kzo9I	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
LguI	GCTCTTC	1 cut(s)	2511
LmnI	GCTCC	4 cut(s)	499, 1435, 1792, 2041
Lsp1109I	GCAGC	8 cut(s)	313, 364, 466, 559, 1051, 1054, 1920, 2056
LweI	GCATC	7 cut(s)	145, 525, 814, 1051, 1138, 1165, 1486
MaeI	CTAG	7 cut(s)	90, 389, 417, 677, 1130, 1796, 2631
MaeII	ACGT	2 cut(s)	1306, 2065
MaeIII	GTNAC	5 cut(s)	662, 1687, 1700, 2203, 2506
MalI	GATC	9 cut(s)	408, 483, 771, 1203, 1356, 1544, 1919, 2073, 2103
MboI	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
MfeI	CAATTG	1 cut(s)	879
MflI	RGATCY	5 cut(s)	406, 481, 1201, 1354, 1542
MhlI	GDGCHC	1 cut(s)	277
MlyI	GAGTC	5 cut(s)	251, 341, 656, 2368, 2432
MmeI	TCCRAC	4 cut(s)	126, 234, 2034, 2630
Mph1103I	ATGCAT	2 cut(s)	271, 1180
MroI	TCCGGA	2 cut(s)	124, 1357
MroNI	GCCGGC	1 cut(s)	1668
MroXI	GAANNNNTTC	1 cut(s)	2301
MseI	TTAA	8 cut(s)	401, 422, 750, 864, 1194, 1902, 2580, 2595
MslI	CAYNNNNRTG	1 cut(s)	1449
MspA1I	CMGCKG	2 cut(s)	377, 2047
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	6 cut(s)	125, 159, 1231, 1358, 1629, 1669
MunI	CAATTG	1 cut(s)	879
Mva1269I	GAATGC	4 cut(s)	271, 358, 389, 1817
MwoI	GCNNNNNNNGC	6 cut(s)	353, 615, 1094, 1175, 1436, 2454
NaeI	GCCGGC	1 cut(s)	1670
NdeI	CATATG	3 cut(s)	1108, 1180, 2106
NdeII	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
NgoMIV	GCCGGC	1 cut(s)	1668
NlaIV	GGNNCC	4 cut(s)	44, 45, 360, 2058
NsiI	ATGCAT	2 cut(s)	271, 1180
NspI	RCATGY	6 cut(s)	273, 1668, 1787, 2175, 2228, 2443
PaeI	GCATGC	1 cut(s)	1668
PagI	TCATGA	1 cut(s)	1255
PciI	ACATGT	2 cut(s)	2171, 2439
PciSI	GCTCTTC	1 cut(s)	2511
PctI	GAATGC	4 cut(s)	271, 358, 389, 1817
PdiI	GCCGGC	1 cut(s)	1670
PdmI	GAANNNNTTC	1 cut(s)	2301
PfeI	GAWTC	8 cut(s)	63, 1208, 1740, 1748, 1760, 1769, 2177, 2558
PinAI	ACCGGT	2 cut(s)	1230, 1628
PkrI	GCNGC	9 cut(s)	314, 328, 379, 456, 574, 1066, 1069, 1935, 2046
PleI	GAGTC	5 cut(s)	251, 340, 655, 2367, 2431
PpsI	GAGTC	5 cut(s)	251, 340, 655, 2367, 2431
Ppu21I	YACGTR	1 cut(s)	2066
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	2 cut(s)	2171, 2439
PsiI	TTATAA	2 cut(s)	507, 807
Psp5II	RGGWCCY	1 cut(s)	43
PspEI	GGTNACC	2 cut(s)	1700, 2506
PspFI	CCCAGC	1 cut(s)	2047
PspN4I	GGNNCC	4 cut(s)	44, 45, 360, 2058
PspPI	GGNCC	5 cut(s)	43, 310, 358, 1847, 2399
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1483
PstNI	CAGNNNCTG	3 cut(s)	1296, 1850, 2454
PsuI	RGATCY	5 cut(s)	406, 481, 1201, 1354, 1542
PvuII	CAGCTG	1 cut(s)	2047
RsaI	GTAC	4 cut(s)	94, 299, 2223, 2453
RsaNI	GTAC	4 cut(s)	93, 298, 2222, 2452
RseI	CAYNNNNRTG	1 cut(s)	1449
SapI	GCTCTTC	1 cut(s)	2511
SaqAI	TTAA	8 cut(s)	401, 422, 750, 864, 1194, 1902, 2580, 2595
SatI	GCNGC	9 cut(s)	313, 327, 378, 455, 573, 1065, 1068, 1934, 2045
Sau3AI	GATC	9 cut(s)	406, 481, 769, 1201, 1354, 1542, 1917, 2071, 2101
Sau96I	GGNCC	5 cut(s)	43, 310, 358, 1847, 2399
SchI	GAGTC	5 cut(s)	251, 341, 656, 2368, 2432
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	7 cut(s)	145, 525, 814, 1051, 1138, 1165, 1486
SfcI	CTRYAG	1 cut(s)	1479
SinI	GGWCC	3 cut(s)	43, 358, 2399
SmiMI	CAYNNNNRTG	1 cut(s)	1449
SmlI	CTYRAG	2 cut(s)	441, 863
SmoI	CTYRAG	2 cut(s)	441, 863
SpeI	ACTAGT	1 cut(s)	416
SphI	GCATGC	1 cut(s)	1668
SsiI	CCGC	3 cut(s)	313, 356, 375
SspI	AATATT	1 cut(s)	1159
SspMI	CTAG	7 cut(s)	90, 389, 417, 677, 1130, 1796, 2631
StyI	CCWWGG	3 cut(s)	511, 1129, 2413
TaaI	ACNGT	6 cut(s)	74, 142, 233, 1014, 1045, 2260
TaiI	ACGT	2 cut(s)	1309, 2068
TaqI	TCGA	2 cut(s)	768, 1801
TatI	WGTACW	2 cut(s)	297, 2221
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	8 cut(s)	63, 1208, 1740, 1748, 1760, 1769, 2177, 2558
Tru1I	TTAA	8 cut(s)	401, 422, 750, 864, 1194, 1902, 2580, 2595
Tru9I	TTAA	8 cut(s)	401, 422, 750, 864, 1194, 1902, 2580, 2595
TscAI	CASTG	4 cut(s)	103, 1048, 1758, 2265
TseI	GCWGC	8 cut(s)	326, 377, 454, 572, 1064, 1067, 1933, 2044
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	4 cut(s)	103, 1048, 1758, 2265
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	3 cut(s)	43, 358, 2399
XagI	CCTNNNNNAGG	2 cut(s)	320, 1842
XapI	RAATTY	2 cut(s)	1950, 1969
XceI	RCATGY	6 cut(s)	273, 1668, 1787, 2175, 2228, 2443
XmaJI	CCTAGG	1 cut(s)	1129
XmiI	GTMKAC	3 cut(s)	522, 1038, 1303
XmnI	GAANNNNTTC	1 cut(s)	2301
XspI	CTAG	7 cut(s)	90, 389, 417, 677, 1130, 1796, 2631
Zsp2I	ATGCAT	2 cut(s)	271, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.