Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

11771556 .. 11772279

Gene Structure 724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCGGGTCGGGGCAAGGGCGGTAAGGGTTTGGGCAAAGGCGGGGCCAAGCGCCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTGGCTCGCCGTGGCGGCGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTGGAGAACGTCATCCGCGATGCCGTGACGTACACCGAGCACGCCAGGAGGAAGACGGTGACGGCCATGGATGTGGTGTACGCGCTCAAGAGGCAGGGCAGGACTCTCTACGGGTTCGGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

103

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	72, 204, 269
AciI	CCGC	7 cut(s)	21, 42, 70, 106, 126, 202, 306
AcoI	YGGCCR	2 cut(s)	99, 249
AcvI	CACGTG	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	129, 171
AfaI	GTAC	2 cut(s)	218, 266
AfiI	CCNNNNNNNGG	2 cut(s)	61, 112
AflIII	ACRYGT	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	81, 230
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	4 cut(s)	45, 99, 145, 249
AspLEI	GCGC	2 cut(s)	54, 271
AspS9I	GGNCC	2 cut(s)	45, 64
AsuHPI	GGTGA	2 cut(s)	82, 256
AvaII	GGWCC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	4 cut(s)	93, 105, 194, 264
BciT130I	CCWGG	2 cut(s)	83, 232
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	83, 232
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	45, 64
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	83, 232
BmsI	GCATC	2 cut(s)	96, 196
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	129, 171
BsaJI	CCNNGG	3 cut(s)	82, 121, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 112
Bse118I	RCCGGY	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	83, 232
BseDI	CCNNGG	3 cut(s)	82, 121, 252
BseGI	GGATG	4 cut(s)	78, 102, 198, 262
BseLI	CCNNNNNNNGG	2 cut(s)	61, 112
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	3 cut(s)	72, 204, 269
BshFI	GGCC	4 cut(s)	47, 101, 147, 251
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	61, 112
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	4 cut(s)	47, 101, 147, 251
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	7 cut(s)	21, 42, 70, 106, 126, 202, 306
BspANI	GGCC	4 cut(s)	47, 101, 147, 251
BspFNI	CGCG	3 cut(s)	72, 204, 269
BspLI	GGNNCC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	82, 121, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	129, 171
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	83, 232
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	2 cut(s)	129, 171
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	99, 118, 228
BstDSI	CCRYGG	2 cut(s)	121, 252
BstF5I	GGATG	4 cut(s)	78, 102, 198, 262
BstFNI	CGCG	3 cut(s)	72, 204, 269
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 271
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 277
BstNI	CCWGG	2 cut(s)	83, 232
BstSCI	CCNGG	2 cut(s)	81, 230
BstUI	CGCG	3 cut(s)	72, 204, 269
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	4 cut(s)	47, 101, 147, 251
BtgI	CCRYGG	2 cut(s)	121, 252
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	78, 102, 198, 262
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	3 cut(s)	99, 118, 228
CfoI	GCGC	2 cut(s)	54, 271
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	45, 64
CseI	GACGC	2 cut(s)	118, 160
Csp6I	GTAC	2 cut(s)	217, 265
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	47, 97, 101, 116, 147, 251
CviKI_1	RGCY	6 cut(s)	47, 97, 101, 116, 147, 251
CviQI	GTAC	2 cut(s)	217, 265
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	99, 249
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	81, 230
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	4 cut(s)	65, 89, 185, 269
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	2 cut(s)	53, 270
GluI	GCNGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	47, 101, 147, 251
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	2 cut(s)	118, 160
HhaI	GCGC	2 cut(s)	54, 271
Hin1I	GRCGYC	2 cut(s)	129, 171
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	2 cut(s)	52, 269
HinP1I	GCGC	2 cut(s)	52, 269
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	82, 256
Hpy166II	GTNNAC	2 cut(s)	219, 265
Hpy188III	TCNNGA	3 cut(s)	178, 188, 274
Hpy8I	GTNNAC	2 cut(s)	219, 265
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	166, 195, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 277
HpySE526I	ACGT	3 cut(s)	166, 195, 215
Hsp92I	GRCGYC	2 cut(s)	129, 171
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	2 cut(s)	52, 269
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	180
LweI	GCATC	2 cut(s)	96, 196
MaeII	ACGT	3 cut(s)	166, 195, 215
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	6 cut(s)	77, 151, 158, 185, 228, 270
MroNI	GCCGGC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	83, 232
MvaI	CCWGG	2 cut(s)	83, 232
MvnI	CGCG	3 cut(s)	72, 204, 269
MwoI	GCNNNNNNNGC	2 cut(s)	126, 277
NaeI	GCCGGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	211, 244
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	283
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	81, 230
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	81, 230
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	2 cut(s)	45, 64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	2 cut(s)	218, 266
RsaNI	GTAC	2 cut(s)	217, 265
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	45, 64
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	83, 232
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	4 cut(s)	66, 169, 198, 218
SfaNI	GCATC	2 cut(s)	96, 196
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	176, 272
SmoI	CTYRAG	2 cut(s)	176, 272
SsiI	CCGC	7 cut(s)	21, 42, 70, 106, 126, 202, 306
StyD4I	CCNGG	2 cut(s)	81, 230
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	3 cut(s)	169, 198, 218
TauI	GCSGC	1 cut(s)	129
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.