Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

20337434 .. 20350556

Gene Structure 13123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGGCTTGGACGGATAAGGATGGTTGTAATGGGAAAGAAGGGGACCCAGTTGTAGAGAATGGATTCTTGAACTGTTCGCAGCCTTCTCCTAGTACCAGTGGCTCTCTTCTTGCTGGTGCAACTCCCGAAGGGGGGAAGAGTTTTGAAGTGAAAGAGACGATTTCTTATGCCAACATTCTTCGTTCAAGGAACAAGTTTTCTGATGCTCTTAGTCTTTATGAGACTGTGTTGGACAAAGATGCCAGAAATGTGGAAGCTCATATTGGGAAAGGAATATGCTTGCAAATGAAGAATATGGGAAGGCTTGCTTTTGACAGTTTCACGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCGCCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCAGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTGCTGGCAACACTCAAGATGGATTGCAGAAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCATATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTGCTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAATTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTACAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGACAGAGACAACCTTGATAAAGCAGTGGAGTGTTATCAGATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATAATTGCAAATCCCACATATGCAGAAGCATATAACAACCTAGGGGTTCTTTACAGAGATGCTGGCAATATTTCTCTGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAATGCAGGCCAGAACCGGTTGCTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGTTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCGGAACGTCCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGACAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTCGCAAGCATTGTTAGGGAAGATAAGATTGATATCTTGGTGGAACTTACTGGTCATACTGCTAACAACAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCAATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAAGCAGAAGCATGTTGAGCAGCTAGTTCGATTACCAGAATGCTTCCTTTGTTATACACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTCGCAAAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCTCGCCTTGTAGTAAAATGTAAGCCCTTTAGTTGCGATAGTGTGAGAGAGAGATTTCTTTCAACATTGGAGCAGCTGGGGTTGGAACCACTACGTGTTGATCTTCTGCCTCTAATTTTACTCAATTACGATCATATGCAAGCATATTCTCTCATGGACATTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

745

Amino Acids

83.21

Weight (kDa)

5.84

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	193 - 219	5e-07	Tetratricopeptide repeat
TPR_1	PF00515	227 - 260	6.5e-10	Tetratricopeptide repeat
TPR_2	PF07719	227 - 259	6.6e-07	Tetratricopeptide repeat
TPR_8	PF13181	227 - 259	5.4e-08	Tetratricopeptide repeat
TPR_12	PF13424	227 - 295	7.9e-07	Tetratricopeptide repeat
TPR_1	PF00515	336 - 369	7.2e-10	Tetratricopeptide repeat
TPR_2	PF07719	336 - 368	2.8e-06	Tetratricopeptide repeat
TPR_8	PF13181	336 - 368	1e-05	Tetratricopeptide repeat
TPR_11	PF13414	345 - 383	2.3e-06	TPR repeat
TPR_12	PF13424	371 - 434	1.5e-08	Tetratricopeptide repeat
TPR_16	PF13432	382 - 437	8.6e-07	Tetratricopeptide repeat
TPR_1	PF00515	404 - 436	1.3e-09	Tetratricopeptide repeat
TPR_2	PF07719	404 - 436	3.5e-07	Tetratricopeptide repeat
TPR_8	PF13181	404 - 436	2.3e-07	Tetratricopeptide repeat
Glyco_transf_41	PF13844	483 - 640	4.2e-23	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	591, 891
AccI	GTMKAC	3 cut(s)	606, 1137, 1402
AccIII	TCCGGA	1 cut(s)	1456
AciI	CCGC	2 cut(s)	397, 459
AclWI	GGATC	4 cut(s)	560, 1295, 1448, 1649
AcsI	RAATTY	3 cut(s)	775, 2049, 2068
AcuI	CTGAAG	1 cut(s)	702
AdeI	CACNNNGTG	1 cut(s)	2165
AfaI	GTAC	3 cut(s)	94, 383, 917
AfiI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
AflII	CTTAAG	1 cut(s)	947
AflIII	ACRYGT	1 cut(s)	2164
AgeI	ACCGGT	1 cut(s)	1329
AgsI	TTSAA	9 cut(s)	70, 146, 186, 559, 994, 1120, 1630, 1872, 2133
AhdI	GACNNNNNGTC	1 cut(s)	730
AhlI	ACTAGT	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 278, 644, 676
AloI	GAACNNNNNNTCC	2 cut(s)	969, 1001
AluBI	AGCT	9 cut(s)	257, 511, 554, 764, 1187, 1529, 1894, 1967, 2146
AluI	AGCT	9 cut(s)	257, 511, 554, 764, 1187, 1529, 1894, 1967, 2146
Alw26I	GTCTC	3 cut(s)	149, 215, 1041
AlwI	GGATC	4 cut(s)	560, 1295, 1448, 1649
AlwNI	CAGNNNCTG	2 cut(s)	1395, 1949
Aor13HI	TCCGGA	1 cut(s)	1456
AoxI	GGCC	6 cut(s)	327, 394, 668, 1321, 1769, 1946
ApeKI	GCWGC	9 cut(s)	79, 410, 461, 656, 1163, 1166, 1891, 2032, 2143
ApoI	RAATTY	3 cut(s)	775, 2049, 2068
AsiGI	ACCGGT	1 cut(s)	1329
Asp700I	GAANNNNTTC	1 cut(s)	62
AspA2I	CCTAGG	1 cut(s)	1228
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	3 cut(s)	43, 394, 1946
AsuHPI	GGTGA	1 cut(s)	950
AvaII	GGWCC	1 cut(s)	43
AvrII	CCTAGG	1 cut(s)	1228
AxyI	CCTNAGG	2 cut(s)	401, 1938
BaeGI	GKGCMC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	566
BbvI	GCAGC	9 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2019, 2155
BccI	CCATC	5 cut(s)	14, 338, 524, 1075, 1150
BceAI	ACGGC	1 cut(s)	648
BcgI	CGANNNNNNTGC	2 cut(s)	1880, 1914
BcoDI	GTCTC	3 cut(s)	149, 215, 1041
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
BfmI	CTRYAG	1 cut(s)	1578
BfoI	RGCGCY	1 cut(s)	638
BfrI	CTTAAG	1 cut(s)	947
BglII	AGATCT	1 cut(s)	490
BlnI	CCTAGG	1 cut(s)	1228
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	43, 394, 1946
BmiI	GGNNCC	3 cut(s)	44, 45, 2157
BmrI	ACTGGG	2 cut(s)	41, 1405
BmsI	GCATC	8 cut(s)	193, 229, 609, 898, 1150, 1237, 1264, 1585
BmuI	ACTGGG	2 cut(s)	41, 1405
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	2 cut(s)	1666, 1947
BpuEI	CTTGAG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	852
BsaAI	YACGTR	1 cut(s)	2165
BsaBI	GATNNNNATC	3 cut(s)	852, 1483, 1709
BsaJI	CCNNGG	2 cut(s)	595, 1228
BsaWI	WCCGGW	2 cut(s)	1329, 1456
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
Bse118I	RCCGGY	2 cut(s)	1329, 1767
Bse1I	ACTGG	7 cut(s)	47, 96, 899, 1400, 1732, 1819, 1857
Bse21I	CCTNAGG	2 cut(s)	401, 1938
Bse3DI	GCAATG	2 cut(s)	1292, 1347
Bse8I	GATNNNNATC	3 cut(s)	852, 1483, 1709
BseAI	TCCGGA	1 cut(s)	1456
BseCI	ATCGAT	1 cut(s)	852
BseDI	CCNNGG	2 cut(s)	595, 1228
BseGI	GGATG	2 cut(s)	25, 1165
BseJI	GATNNNNATC	3 cut(s)	852, 1483, 1709
BseLI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
BseMI	GCAATG	2 cut(s)	1292, 1347
BseMII	CTCAG	4 cut(s)	357, 405, 1929, 2070
BseNI	ACTGG	7 cut(s)	47, 96, 899, 1400, 1732, 1819, 1857
BseRI	GAGGAG	1 cut(s)	1521
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	9 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2019, 2155
BseYI	CCCAGC	1 cut(s)	2146
BsgI	GTGCAG	2 cut(s)	1026, 1758
BshFI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
BshTI	ACCGGT	1 cut(s)	1329
BshVI	ATCGAT	1 cut(s)	852
BsiSI	CCGG	3 cut(s)	1330, 1457, 1768
BslFI	GGGAC	5 cut(s)	56, 1406, 1449, 1454, 1631
BslI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
BsmAI	GTCTC	3 cut(s)	149, 215, 1041
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	5 cut(s)	56, 1406, 1449, 1454, 1631
BsmI	GAATGC	4 cut(s)	355, 442, 473, 1916
BsnI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp13I	TCCGGA	1 cut(s)	1456
Bsp1407I	TGTACA	2 cut(s)	381, 915
Bsp143I	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
BspACI	CCGC	2 cut(s)	397, 459
BspANI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
BspCNI	CTCAG	4 cut(s)	356, 406, 1930, 2069
BspDI	ATCGAT	1 cut(s)	852
BspEI	TCCGGA	1 cut(s)	1456
BspHI	TCATGA	1 cut(s)	1354
BspLI	GGNNCC	3 cut(s)	44, 45, 2157
BspMAI	CTGCAG	1 cut(s)	1582
BspPI	GGATC	4 cut(s)	560, 1295, 1448, 1649
BspTI	CTTAAG	1 cut(s)	947
BsrDI	GCAATG	2 cut(s)	1292, 1347
BsrFI	RCCGGY	2 cut(s)	1329, 1767
BsrGI	TGTACA	2 cut(s)	381, 915
BsrI	ACTGG	7 cut(s)	47, 96, 899, 1400, 1732, 1819, 1857
BssAI	RCCGGY	2 cut(s)	1329, 1767
BssECI	CCNNGG	2 cut(s)	595, 1228
BssMI	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
BssT1I	CCWWGG	2 cut(s)	595, 1228
Bst4CI	ACNGT	5 cut(s)	74, 226, 317, 1113, 1144
Bst6I	CTCTTC	2 cut(s)	111, 131
BstAFI	CTTAAG	1 cut(s)	947
BstAUI	TGTACA	2 cut(s)	381, 915
BstBAI	YACGTR	1 cut(s)	2165
BstDEI	CTNAG	8 cut(s)	209, 343, 401, 414, 1468, 1599, 1938, 2056
BstEII	GGTNACC	1 cut(s)	1799
BstENI	CCTNNNNNAGG	2 cut(s)	404, 1941
BstF5I	GGATG	2 cut(s)	25, 1165
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	9 cut(s)	493, 568, 856, 1303, 1456, 1644, 2019, 2173, 2203
BstMAI	GTCTC	3 cut(s)	149, 215, 1041
BstMBI	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
BstMWI	GCNNNNNNNGC	6 cut(s)	437, 699, 1193, 1274, 1535, 1888
BstNSI	RCATGY	3 cut(s)	357, 1767, 1886
BstPI	GGTNACC	1 cut(s)	1799
BstSFI	CTRYAG	1 cut(s)	1578
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	9 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2019, 2155
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
BstXI	CCANNNNNNTGG	2 cut(s)	250, 337
BstYI	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
Bsu15I	ATCGAT	1 cut(s)	852
Bsu36I	CCTNAGG	2 cut(s)	401, 1938
BsuRI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
BsuTUI	ATCGAT	1 cut(s)	852
BtsCI	GGATG	2 cut(s)	25, 1165
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	4 cut(s)	103, 1071, 1140, 1850
CaiI	CAGNNNCTG	2 cut(s)	1395, 1949
CciI	TCATGA	1 cut(s)	1354
CfoI	GCGC	1 cut(s)	637
Cfr10I	RCCGGY	2 cut(s)	1329, 1767
Cfr13I	GGNCC	3 cut(s)	43, 394, 1946
ClaI	ATCGAT	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	93, 382, 916
CspAI	ACCGGT	1 cut(s)	1329
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	9 cut(s)	354, 697, 958, 1174, 1355, 1544, 1764, 1883, 2224
CviQI	GTAC	3 cut(s)	93, 382, 916
DdeI	CTNAG	8 cut(s)	209, 343, 401, 414, 1468, 1599, 1938, 2056
DpnI	GATC	9 cut(s)	492, 567, 855, 1302, 1455, 1643, 2018, 2172, 2202
DpnII	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
DraI	TTTAAA	1 cut(s)	507
DraIII	CACNNNGTG	1 cut(s)	2165
DriI	GACNNNNNGTC	1 cut(s)	730
Eam1104I	CTCTTC	2 cut(s)	111, 131
Eam1105I	GACNNNNNGTC	1 cut(s)	730
EarI	CTCTTC	2 cut(s)	111, 131
Eco130I	CCWWGG	2 cut(s)	595, 1228
Eco32I	GATATC	2 cut(s)	850, 1711
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	702
Eco81I	CCTNAGG	2 cut(s)	401, 1938
Eco91I	GGTNACC	1 cut(s)	1799
EcoNI	CCTNNNNNAGG	2 cut(s)	404, 1941
EcoO109I	RGGNCCY	2 cut(s)	43, 1946
EcoO65I	GGTNACC	1 cut(s)	1799
EcoRI	GAATTC	1 cut(s)	2049
EcoRV	GATATC	2 cut(s)	850, 1711
EcoT14I	CCWWGG	2 cut(s)	595, 1228
EcoT22I	ATGCAT	2 cut(s)	355, 1279
ErhI	CCWWGG	2 cut(s)	595, 1228
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	9 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886, 2227
FalI	AAGNNNNNCTT	4 cut(s)	292, 324, 1518, 1550
FaqI	GGGAC	5 cut(s)	56, 1406, 1449, 1454, 1631
FatI	CATG	9 cut(s)	353, 696, 957, 1173, 1354, 1543, 1763, 1882, 2223
FauI	CCCGC	1 cut(s)	466
FauNDI	CATATG	3 cut(s)	1207, 1279, 2205
FblI	GTMKAC	3 cut(s)	606, 1137, 1402
FokI	GGATG	2 cut(s)	32, 1172
FspBI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
GlaI	GCGC	1 cut(s)	636
GsaI	CCCAGC	1 cut(s)	2150
GsuI	CTGGAG	2 cut(s)	1666, 1947
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
HapII	CCGG	3 cut(s)	1330, 1457, 1768
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	9 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886, 2227
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HindIII	AAGCTT	2 cut(s)	509, 552
HinfI	GANTC	9 cut(s)	63, 341, 416, 731, 1307, 1839, 1847, 1859, 1868
HpaII	CCGG	3 cut(s)	1330, 1457, 1768
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	3 cut(s)	607, 1138, 1403
Hpy188I	TCNGA	5 cut(s)	202, 346, 435, 613, 1080
Hpy8I	GTNNAC	3 cut(s)	607, 1138, 1403
HpyCH4III	ACNGT	5 cut(s)	74, 226, 317, 1113, 1144
HpyCH4IV	ACGT	3 cut(s)	1405, 1462, 2164
HpyF10VI	GCNNNNNNNGC	6 cut(s)	437, 699, 1193, 1274, 1535, 1888
HpyF3I	CTNAG	8 cut(s)	209, 343, 401, 414, 1468, 1599, 1938, 2056
HpySE526I	ACGT	3 cut(s)	1405, 1462, 2164
Hsp92II	CATG	9 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886, 2227
HspAI	GCGC	1 cut(s)	635
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	1456
KroI	GCCGGC	1 cut(s)	1767
KroNI	GCCGGC	1 cut(s)	1769
Kzo9I	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
LmnI	GCTCC	3 cut(s)	583, 1534, 2140
Lsp1109I	GCAGC	9 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2019, 2155
LweI	GCATC	8 cut(s)	193, 229, 609, 898, 1150, 1237, 1264, 1585
MaeI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
MaeII	ACGT	3 cut(s)	1405, 1462, 2164
MaeIII	GTNAC	3 cut(s)	746, 1786, 1799
MalI	GATC	9 cut(s)	492, 567, 855, 1302, 1455, 1643, 2018, 2172, 2202
MboI	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
MboII	GAAGA	7 cut(s)	98, 148, 170, 301, 571, 1709, 2165
MfeI	CAATTG	2 cut(s)	963, 1827
MflI	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
MhlI	GDGCHC	1 cut(s)	361
MlyI	GAGTC	3 cut(s)	335, 425, 740
MmeI	TCCRAC	3 cut(s)	210, 318, 2133
Mph1103I	ATGCAT	2 cut(s)	355, 1279
MroI	TCCGGA	1 cut(s)	1456
MroNI	GCCGGC	1 cut(s)	1767
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
MslI	CAYNNNNRTG	1 cut(s)	1548
MspA1I	CMGCKG	2 cut(s)	461, 2146
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	3 cut(s)	1330, 1457, 1768
MunI	CAATTG	2 cut(s)	963, 1827
Mva1269I	GAATGC	4 cut(s)	355, 442, 473, 1916
MwoI	GCNNNNNNNGC	6 cut(s)	437, 699, 1193, 1274, 1535, 1888
NaeI	GCCGGC	1 cut(s)	1769
NdeI	CATATG	3 cut(s)	1207, 1279, 2205
NdeII	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
NgoMIV	GCCGGC	1 cut(s)	1767
NlaIII	CATG	9 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886, 2227
NlaIV	GGNNCC	3 cut(s)	44, 45, 2157
NsiI	ATGCAT	2 cut(s)	355, 1279
NspI	RCATGY	3 cut(s)	357, 1767, 1886
PaeI	GCATGC	1 cut(s)	1767
PagI	TCATGA	1 cut(s)	1354
PctI	GAATGC	4 cut(s)	355, 442, 473, 1916
PdiI	GCCGGC	1 cut(s)	1769
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	6 cut(s)	63, 1307, 1839, 1847, 1859, 1868
PflFI	GACNNNGTC	1 cut(s)	1622
PinAI	ACCGGT	1 cut(s)	1329
PleI	GAGTC	3 cut(s)	335, 424, 739
PpsI	GAGTC	3 cut(s)	335, 424, 739
Ppu21I	YACGTR	1 cut(s)	2165
PpuMI	RGGWCCY	1 cut(s)	43
PsiI	TTATAA	2 cut(s)	591, 891
Psp5II	RGGWCCY	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	1799
PspFI	CCCAGC	1 cut(s)	2146
PspN4I	GGNNCC	3 cut(s)	44, 45, 2157
PspPI	GGNCC	3 cut(s)	43, 394, 1946
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1582
PstNI	CAGNNNCTG	2 cut(s)	1395, 1949
PsuI	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
PsyI	GACNNNGTC	1 cut(s)	1622
PvuII	CAGCTG	1 cut(s)	2146
RsaI	GTAC	3 cut(s)	94, 383, 917
RsaNI	GTAC	3 cut(s)	93, 382, 916
RseI	CAYNNNNRTG	1 cut(s)	1548
SaqAI	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
Sau3AI	GATC	9 cut(s)	490, 565, 853, 1300, 1453, 1641, 2016, 2170, 2200
Sau96I	GGNCC	3 cut(s)	43, 394, 1946
SchI	GAGTC	3 cut(s)	335, 425, 740
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	8 cut(s)	193, 229, 609, 898, 1150, 1237, 1264, 1585
SfcI	CTRYAG	1 cut(s)	1578
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	1548
SmlI	CTYRAG	2 cut(s)	525, 947
SmoI	CTYRAG	2 cut(s)	525, 947
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	1767
SsiI	CCGC	2 cut(s)	397, 459
SspI	AATATT	1 cut(s)	1258
SspMI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
StyI	CCWWGG	2 cut(s)	595, 1228
TaaI	ACNGT	5 cut(s)	74, 226, 317, 1113, 1144
TaiI	ACGT	3 cut(s)	1408, 1465, 2167
TaqI	TCGA	2 cut(s)	852, 1900
TatI	WGTACW	2 cut(s)	381, 915
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	6 cut(s)	63, 1307, 1839, 1847, 1859, 1868
Tru1I	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
Tru9I	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
TscAI	CASTG	4 cut(s)	103, 1071, 1147, 1857
TseI	GCWGC	9 cut(s)	79, 410, 461, 656, 1163, 1166, 1891, 2032, 2143
TspDTI	ATGAA	9 cut(s)	302, 438, 564, 990, 1343, 1358, 1371, 1560, 1683
TspGWI	ACGGA	2 cut(s)	26, 338
TspRI	CASTG	4 cut(s)	103, 1071, 1147, 1857
Tth111I	GACNNNGTC	1 cut(s)	1622
Vha464I	CTTAAG	1 cut(s)	947
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	2 cut(s)	404, 1941
XapI	RAATTY	3 cut(s)	775, 2049, 2068
XceI	RCATGY	3 cut(s)	357, 1767, 1886
XmaJI	CCTAGG	1 cut(s)	1228
XmiI	GTMKAC	3 cut(s)	606, 1137, 1402
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
Zsp2I	ATGCAT	2 cut(s)	355, 1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.