Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

11780603 .. 11786825

Gene Structure 6223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGTGAATATAACCACCATCAGAACAGCATCAAATGGCCTGTGGCAAGGCGACAACCCTTTAAACTTCGCCTTCCCACTCCTAATAGTTCAGACCACCTTGATCATCGTCGTCAGCCGCTTCCTTGCTTTCCTACTGAAACCCCTCCACCAACCCAAAGTCATTGCAGAGATTGTCGGTGGAATTCTGCTTGGTCCTTCAGCTTTCGGACGAAACAAAGATTACTTGCACAAAATCTTTCCTTCATGGAGCACTCCAATATTAGAATCAGTGGCAAGTATTGGTCTTCTATTTTACTTGTTCCTTGTAGGCTTAGAGCTCGATCTGAGCTCCACTCGCCGAAGTGGCAGAAGGGGTTTCAGCATAGCTCTCGCCGGCATAACGCTCCCTTTCCTCTGCGGCATCGGCGTCGCTTTGGTCTTCCGCAAAACAATTGATGGAGCTGACAAAGCAGGGTTCACTCAGTTCCTTGTCTTCATGGGAGTTGCCCTCTCCATCACCGCCTTCCCTGTGCTTGCCCGCATCTTAGCGGAGCTCAAACTGTTAACAACTCAGATTGGGGAGACTGCCATGGCGGCTGCTGCCTTCAACGACGTTGGTGCATGGATCTTGCTGGCCGTGGCGGTGGCCCTGGCAGGTGACGGTGCTGGTGGCCACAACAAGAGCCCTTTGATATCCATTTGGGTCCTCCTTTCAGGTGTTGCCTTTGTGGCCTTCATGATGGTCGTGATCCGACCTGCCATGAAATGGGTCGCCAGCCGGTGCACACCGGAGCAAGATGTCGTGGACGAAGCCTATATTTGCTTAACCTTAACCGGAGTAATGGTGGCCGGGTTCATGACTGACATAATTGGAATTCATTCCATATTTGGAGCTTTCGTCTTCGGACTCGCAATTCCGAAAGGACAGTTTGCAGATAGATTAATATCGAGGATTGAAGACTTAGTGTCCGGCTTGTTGCTTCCGCTTTACTTTGCATCAAGTGGGTTGAAAACAGATGTGGCTAAAATACGTGGCGGCAGGGCGTGGGGGTTGTTGGCTCTGGTTATAACCACGGCTTGCGCTGGGAAGATTCTCGGGACGTTTGTGGTGGCAATGATGTTTATGATTCCGGCAAGAGAGTCATTGACACTTGGTGTGCTCATGAACACTAAAGGCTTGGTGGAGCTCATTGTTCTAAACATTGGCAAGGAGGAGAAGGTGCTAAATGACGAGTCATTTGCAATTCTAGTCCTCATGGCACTCTTCACCACCTTCATTACATGTCCGGTAGTGATGGCCATTTACAAACCGGCACGTGGAATCTCTATTCGCACTCACCGTAAACTTTGTGATCTATCCACAGCTGATCAAGCCGCCAAAGACGAGCTCCGAATTCTTGCGTGTGTTCATGGTCCAAACAATGCACCCTCGCTCATAAGCTTAATAGATTCAATTCGAAGCACCAAAAAATCCCAACTCAAACTCTTCCTAATGCACCTTGTTGAACTCACCGAGCGCTCTTCTTCAATCGTTATGGTCCAACGGGCTCGAAAAAATGGGTTTCCTTTCTTTAACCGAACGCCTCGAGGTGAGTGGTATGATAGAGTTGCTGGGGCATTCCAAGCCTATAGTCAATTGGGACGAGTTACGGTCCGGCCCACAACCGCAATTTCGGCTTTGGCAACAATGTATGAGGATATTTGCCATGTGGCGGAAGAGAAGAGGGCGGCCATGATCGTCTTGCCATTCCACAAGCAATGGAGATGTGATGGTGATGATCATGAGAAAAAAGAGATCAATGTGGGCAATGATTGGAGAGGGGTCAACCAAAGAGTGCTCCAAAATGCGCCGTGCTCGGTTGCAGTGCTTGTGGACCGTGGATTTGATAATTTCAAAGCCCAAAGTCTCGAGCCGGATAAGGTTGTGGCCCTACGGATTTGTATTGTGTTTTTGGGTGGGCCTGATGATCGAGAGGCCTTGGAATTGGGTGGTCGGATGGCTGACCACCCGGCTGTTAAAGTGAAGGTTGTGAGGTTCGCCGAGAAAGAAGGTCTGGAGAGTAATGGGCTTATGTTAAAGCCTTCACCCACCAAGTCCACCGAGAACAGTTGTAGCTTCTCCACAGCCATAATGGACCGAGAGAAAGAAAAGGAACTAGATGAGGCTGCAGTGGCTGAGTTCAGGAGCAAGTTGGTGGAGGATGGGACGGCAGAGTACACTGAGCTAGTGGTGGCTAGGAATATTGTGGAGGGGGTGTTGGCAATTGGACGCAGTGGAGATCAGGACCTAATAATAGTAGGAAAAGGACGGTTCCCATCAAGTATGGTAGCGGAATTGGCAGACCGACAAGCGGAGCACGCTGAGCTGGGGCCTGTCGGAGACATTTTGGCCTTTTCCGGCCACGGTGTGGTCTCATCAATCCTTGTGATTCAACAGCACAATGTAGCTCATGCGGTGGAAGCTCCAGTGTCCAAGATGGTTCGTGGTGAGTATGAAAAGTTCGCCCCTGATGAATCCTCCAGTGTACTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

838

Amino Acids

90.91

Weight (kDa)

7.91

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	40 - 421	8.3e-56	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	486 - 623	2.4e-37	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	638 - 807	6.4e-11	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1049
AarI	CACCTGC	1 cut(s)	626
AbsI	CCTCGAGG	1 cut(s)	1566
Acc36I	ACCTGC	2 cut(s)	626, 745
AccB7I	CCANNNNNTGG	2 cut(s)	747, 2389
AclWI	GGATC	2 cut(s)	614, 724
AcoI	YGGCCR	6 cut(s)	615, 652, 828, 1278, 1710, 2380
AcsI	RAATTY	3 cut(s)	183, 855, 1374
AcuI	CTGAAG	1 cut(s)	183
AcvI	CACGTG	1 cut(s)	1298
AcyI	GRCGYC	1 cut(s)	408
AdeI	CACNNNGTG	2 cut(s)	1136, 2389
AfaI	GTAC	2 cut(s)	2198, 2508
AfeI	AGCGCT	1 cut(s)	1499
AfiI	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 2332, 2389
AflIII	ACRYGT	1 cut(s)	1262
AgsI	TTSAA	8 cut(s)	589, 938, 991, 1434, 1487, 1509, 1876, 2414
AhdI	GACNNNNNGTC	1 cut(s)	946
AjnI	CCWGG	1 cut(s)	630
Alw26I	GTCTC	4 cut(s)	557, 1892, 2355, 2398
Alw44I	GTGCAC	1 cut(s)	763
AlwI	GGATC	2 cut(s)	614, 724
AlwNI	CAGNNNCTG	1 cut(s)	2156
Ama87I	CYCGRG	3 cut(s)	1076, 1566, 1889
Aor51HI	AGCGCT	1 cut(s)	1499
ApaLI	GTGCAC	1 cut(s)	763
ApeKI	GCWGC	3 cut(s)	578, 581, 2147
ApoI	RAATTY	3 cut(s)	183, 855, 1374
ArsI	GACNNNNNNTTYG	4 cut(s)	1202, 1234, 1847, 1879
AseI	ATTAAT	1 cut(s)	923
Asp700I	GAANNNNTTC	1 cut(s)	859
AspLEI	GCGC	3 cut(s)	1064, 1500, 1831
AsuC2I	CCSGG	2 cut(s)	832, 1991
AsuII	TTCGAA	1 cut(s)	1438
AvaI	CYCGRG	3 cut(s)	1076, 1566, 1889
AvaII	GGWCC	8 cut(s)	194, 685, 1394, 1519, 1633, 1855, 2116, 2266
BaeGI	GKGCMC	1 cut(s)	767
BalI	TGGCCA	2 cut(s)	654, 1280
BanII	GRGCYC	7 cut(s)	321, 332, 537, 668, 1170, 1371, 1531
BbrPI	CACGTG	1 cut(s)	1298
BbsI	GAAGAC	5 cut(s)	278, 412, 466, 874, 945
BbvI	GCAGC	3 cut(s)	565, 568, 2134
BceAI	ACGGC	4 cut(s)	602, 1071, 1816, 2205
BcgI	CGANNNNNNTGC	8 cut(s)	352, 386, 391, 425, 581, 615, 1202, 1236
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	3 cut(s)	102, 1348, 1759
BcnI	CCSGG	2 cut(s)	832, 1991
BcoDI	GTCTC	4 cut(s)	557, 1892, 2355, 2398
BfaI	CTAG	4 cut(s)	1229, 2138, 2207, 2217
BfmI	CTRYAG	2 cut(s)	1609, 2148
BfoI	RGCGCY	1 cut(s)	1501
BfuAI	ACCTGC	2 cut(s)	626, 745
BglI	GCCNNNNNGGC	3 cut(s)	345, 575, 710
BisI	GCNGC	9 cut(s)	118, 400, 576, 579, 582, 1018, 1356, 1710, 2148
BlpI	GCTNAGC	1 cut(s)	2343
BlsI	GCNGC	9 cut(s)	119, 401, 577, 580, 583, 1019, 1357, 1711, 2149
Bme1390I	CCNGG	3 cut(s)	632, 832, 1991
Bme18I	GGWCC	8 cut(s)	194, 685, 1394, 1519, 1633, 1855, 2116, 2266
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmeT110I	CYCGRG	3 cut(s)	1076, 1566, 1889
BmiI	GGNNCC	3 cut(s)	686, 2294, 2352
BmrFI	CCNGG	3 cut(s)	632, 832, 1991
BmsI	GCATC	4 cut(s)	38, 411, 531, 986
BpiI	GAAGAC	5 cut(s)	278, 412, 466, 874, 945
BplI	GAGNNNNNCTC	4 cut(s)	319, 351, 474, 506
BpmI	CTGGAG	3 cut(s)	2057, 2430, 2485
Bpu1102I	GCTNAGC	1 cut(s)	2343
Bpu14I	TTCGAA	1 cut(s)	1438
BpuMI	CCSGG	2 cut(s)	832, 1991
BsaAI	YACGTR	2 cut(s)	1013, 1298
BsaBI	GATNNNNATC	1 cut(s)	925
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	2398
BsaJI	CCNNGG	7 cut(s)	570, 618, 630, 1053, 1858, 1959, 2383
BsaWI	WCCGGW	3 cut(s)	769, 815, 1267
BsaXI	ACNNNNNCTCC	6 cut(s)	810, 840, 864, 894, 2222, 2252
Bsc4I	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 2332, 2389
Bse118I	RCCGGY	3 cut(s)	374, 759, 1291
Bse1I	ACTGG	3 cut(s)	2447, 2502, 2514
Bse3DI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
Bse8I	GATNNNNATC	1 cut(s)	925
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	7 cut(s)	570, 618, 630, 1053, 1858, 1959, 2383
BseGI	GGATG	2 cut(s)	1983, 2188
BseJI	GATNNNNATC	1 cut(s)	925
BseLI	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 2332, 2389
BseMI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
BseMII	CTCAG	6 cut(s)	317, 476, 566, 2148, 2193, 2334
BseNI	ACTGG	3 cut(s)	2447, 2502, 2514
BseRI	GAGGAG	1 cut(s)	1208
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	3 cut(s)	565, 568, 2134
BseYI	CCCAGC	3 cut(s)	1064, 1592, 2347
BsiHKCI	CYCGRG	3 cut(s)	1076, 1566, 1889
BslFI	GGGAC	3 cut(s)	1093, 1635, 2200
BslI	CCNNNNNNNGG	5 cut(s)	747, 1298, 1693, 2332, 2389
BsmAI	GTCTC	4 cut(s)	557, 1892, 2355, 2398
BsmFI	GGGAC	3 cut(s)	1093, 1635, 2200
BsmI	GAATGC	1 cut(s)	1598
Bso31I	GGTCTC	1 cut(s)	2398
BsoBI	CYCGRG	3 cut(s)	1076, 1566, 1889
Bsp119I	TTCGAA	1 cut(s)	1438
Bsp1720I	GCTNAGC	1 cut(s)	2343
Bsp19I	CCATGG	1 cut(s)	570
BspCNI	CTCAG	6 cut(s)	318, 475, 565, 2149, 2194, 2335
BspHI	TCATGA	4 cut(s)	717, 837, 1143, 1762
BspLI	GGNNCC	3 cut(s)	686, 2294, 2352
BspMAI	CTGCAG	1 cut(s)	2152
BspMI	ACCTGC	2 cut(s)	626, 745
BspPI	GGATC	2 cut(s)	614, 724
BspQI	GCTCTTC	1 cut(s)	1507
BspT104I	TTCGAA	1 cut(s)	1438
BspTNI	GGTCTC	1 cut(s)	2398
BsrDI	GCAATG	4 cut(s)	162, 1101, 1745, 1795
BsrFI	RCCGGY	3 cut(s)	374, 759, 1291
BsrI	ACTGG	3 cut(s)	2447, 2502, 2514
BssAI	RCCGGY	3 cut(s)	374, 759, 1291
BssECI	CCNNGG	7 cut(s)	570, 618, 630, 1053, 1858, 1959, 2383
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	2 cut(s)	570, 1959
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	9 cut(s)	543, 644, 909, 1322, 1633, 1859, 2090, 2292, 2387
Bst6I	CTCTTC	5 cut(s)	1250, 1472, 1507, 1692, 1697
BstACI	GRCGYC	1 cut(s)	408
BstBAI	YACGTR	2 cut(s)	1013, 1298
BstBI	TTCGAA	1 cut(s)	1438
BstC8I	GCNNGC	7 cut(s)	376, 516, 520, 615, 757, 1060, 2340
BstDEI	CTNAG	9 cut(s)	313, 326, 462, 526, 552, 943, 2157, 2202, 2343
BstDSI	CCRYGG	5 cut(s)	570, 618, 1053, 1858, 2383
BstF5I	GGATG	2 cut(s)	1983, 2188
BstH2I	RGCGCY	1 cut(s)	1501
BstHHI	GCGC	3 cut(s)	1064, 1500, 1831
BstMAI	GTCTC	4 cut(s)	557, 1892, 2355, 2398
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	1 cut(s)	1266
BstSCI	CCNGG	3 cut(s)	630, 830, 1989
BstSFI	CTRYAG	2 cut(s)	1609, 2148
BstSLI	GKGCMC	1 cut(s)	767
BstV1I	GCAGC	3 cut(s)	565, 568, 2134
BstV2I	GAAGAC	5 cut(s)	278, 412, 466, 874, 945
BstX2I	RGATCY	1 cut(s)	606
BstXI	CCANNNNNNTGG	1 cut(s)	2509
BstYI	RGATCY	1 cut(s)	606
BtgI	CCRYGG	5 cut(s)	570, 618, 1053, 1858, 2383
BtsCI	GGATG	2 cut(s)	1983, 2188
BtsI	GCAGTG	3 cut(s)	1851, 2157, 2260
BtsIMutI	CAGTG	7 cut(s)	276, 1851, 2157, 2199, 2260, 2454, 2509
BveI	ACCTGC	2 cut(s)	626, 745
Cac8I	GCNNGC	7 cut(s)	376, 516, 520, 615, 757, 1060, 2340
CaiI	CAGNNNCTG	1 cut(s)	2156
CciI	TCATGA	4 cut(s)	717, 837, 1143, 1762
CfoI	GCGC	3 cut(s)	1064, 1500, 1831
Cfr10I	RCCGGY	3 cut(s)	374, 759, 1291
CpoI	CGGWCCG	1 cut(s)	1633
CseI	GACGC	2 cut(s)	397, 2259
Csp6I	GTAC	2 cut(s)	2197, 2507
CspI	CGGWCCG	1 cut(s)	1633
CviQI	GTAC	2 cut(s)	2197, 2507
DdeI	CTNAG	9 cut(s)	313, 326, 462, 526, 552, 943, 2157, 2202, 2343
DraI	TTTAAA	1 cut(s)	63
DraIII	CACNNNGTG	2 cut(s)	1136, 2389
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	6 cut(s)	615, 652, 828, 1278, 1710, 2380
Eam1104I	CTCTTC	5 cut(s)	1250, 1472, 1507, 1692, 1697
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	5 cut(s)	1250, 1472, 1507, 1692, 1697
EciI	GGCGGA	1 cut(s)	1709
Ecl136II	GAGCTC	5 cut(s)	319, 330, 535, 1168, 1369
Eco130I	CCWWGG	2 cut(s)	570, 1959
Eco147I	AGGCCT	1 cut(s)	1958
Eco24I	GRGCYC	7 cut(s)	321, 332, 537, 668, 1170, 1371, 1531
Eco31I	GGTCTC	1 cut(s)	2398
Eco32I	GATATC	1 cut(s)	675
Eco47I	GGWCC	8 cut(s)	194, 685, 1394, 1519, 1633, 1855, 2116, 2266
Eco47III	AGCGCT	1 cut(s)	1499
Eco53kI	GAGCTC	5 cut(s)	319, 330, 535, 1168, 1369
Eco57I	CTGAAG	1 cut(s)	183
Eco72I	CACGTG	1 cut(s)	1298
Eco88I	CYCGRG	3 cut(s)	1076, 1566, 1889
EcoICRI	GAGCTC	5 cut(s)	319, 330, 535, 1168, 1369
EcoO109I	RGGNCCY	3 cut(s)	685, 2266, 2351
EcoRI	GAATTC	3 cut(s)	183, 855, 1374
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	675
EcoT14I	CCWWGG	2 cut(s)	570, 1959
EcoT38I	GRGCYC	7 cut(s)	321, 332, 537, 668, 1170, 1371, 1531
ErhI	CCWWGG	2 cut(s)	570, 1959
FaqI	GGGAC	3 cut(s)	1093, 1635, 2200
FauI	CCCGC	1 cut(s)	527
FbaI	TGATCA	3 cut(s)	102, 1348, 1759
Fnu4HI	GCNGC	9 cut(s)	118, 400, 576, 579, 582, 1018, 1356, 1710, 2148
FokI	GGATG	2 cut(s)	1990, 2195
FriOI	GRGCYC	7 cut(s)	321, 332, 537, 668, 1170, 1371, 1531
Fsp4HI	GCNGC	9 cut(s)	118, 400, 576, 579, 582, 1018, 1356, 1710, 2148
FspBI	CTAG	4 cut(s)	1229, 2138, 2207, 2217
GlaI	GCGC	3 cut(s)	1063, 1499, 1830
GluI	GCNGC	9 cut(s)	118, 400, 576, 579, 582, 1018, 1356, 1710, 2148
GsaI	CCCAGC	3 cut(s)	1068, 1596, 2351
GsuI	CTGGAG	3 cut(s)	2057, 2430, 2485
HaeII	RGCGCY	1 cut(s)	1501
HgaI	GACGC	2 cut(s)	397, 2259
HhaI	GCGC	3 cut(s)	1064, 1500, 1831
Hin1I	GRCGYC	1 cut(s)	408
Hin6I	GCGC	3 cut(s)	1062, 1498, 1829
HinP1I	GCGC	3 cut(s)	1062, 1498, 1829
HincII	GTYRAC	2 cut(s)	546, 1807
HindII	GTYRAC	2 cut(s)	546, 1807
HindIII	AAGCTT	1 cut(s)	1420
HpaI	GTTAAC	1 cut(s)	546
Hpy99I	CGWCG	3 cut(s)	113, 413, 596
HpyCH4III	ACNGT	9 cut(s)	543, 644, 909, 1322, 1633, 1859, 2090, 2292, 2387
HpyCH4IV	ACGT	4 cut(s)	594, 1012, 1082, 1297
HpyF3I	CTNAG	9 cut(s)	313, 326, 462, 526, 552, 943, 2157, 2202, 2343
HpySE526I	ACGT	4 cut(s)	594, 1012, 1082, 1297
Hsp92I	GRCGYC	1 cut(s)	408
HspAI	GCGC	3 cut(s)	1062, 1498, 1829
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	3 cut(s)	102, 1348, 1759
KspAI	GTTAAC	1 cut(s)	546
LguI	GCTCTTC	1 cut(s)	1507
Lsp1109I	GCAGC	3 cut(s)	565, 568, 2134
LweI	GCATC	4 cut(s)	38, 411, 531, 986
MaeI	CTAG	4 cut(s)	1229, 2138, 2207, 2217
MaeII	ACGT	4 cut(s)	594, 1012, 1082, 1297
MaeIII	GTNAC	2 cut(s)	638, 1627
MfeI	CAATTG	3 cut(s)	432, 1616, 2244
MflI	RGATCY	1 cut(s)	606
MlsI	TGGCCA	2 cut(s)	654, 1280
MluNI	TGGCCA	2 cut(s)	654, 1280
MlyI	GAGTC	3 cut(s)	882, 1130, 1223
MmeI	TCCRAC	4 cut(s)	757, 1546, 1955, 2338
Mox20I	TGGCCA	2 cut(s)	654, 1280
MroNI	GCCGGC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	859
MscI	TGGCCA	2 cut(s)	654, 1280
MseI	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2057
Msp20I	TGGCCA	2 cut(s)	654, 1280
MspA1I	CMGCKG	1 cut(s)	1346
MspR9I	CCNGG	3 cut(s)	632, 832, 1991
MunI	CAATTG	3 cut(s)	432, 1616, 2244
Mva1269I	GAATGC	1 cut(s)	1598
MvaI	CCWGG	1 cut(s)	632
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	832, 1991
NcoI	CCATGG	1 cut(s)	570
NgoMIV	GCCGGC	1 cut(s)	374
NlaIV	GGNNCC	3 cut(s)	686, 2294, 2352
NmeAIII	GCCGAG	1 cut(s)	2047
NmuCI	GTSAC	1 cut(s)	638
NspI	RCATGY	1 cut(s)	1266
NspV	TTCGAA	1 cut(s)	1438
PaeR7I	CTCGAG	2 cut(s)	1566, 1889
PagI	TCATGA	4 cut(s)	717, 837, 1143, 1762
PaqCI	CACCTGC	1 cut(s)	626
PceI	AGGCCT	1 cut(s)	1958
PciI	ACATGT	1 cut(s)	1262
PciSI	GCTCTTC	1 cut(s)	1507
PcsI	WCGNNNNNNNCGW	1 cut(s)	1318
PctI	GAATGC	1 cut(s)	1598
PdiI	GCCGGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	7 cut(s)	266, 1072, 1108, 1302, 1430, 2410, 2495
PflMI	CCANNNNNTGG	2 cut(s)	747, 2389
PkrI	GCNGC	9 cut(s)	119, 401, 577, 580, 583, 1019, 1357, 1711, 2149
PleI	GAGTC	3 cut(s)	882, 1129, 1222
PmaCI	CACGTG	1 cut(s)	1298
PmlI	CACGTG	1 cut(s)	1298
PpsI	GAGTC	3 cut(s)	882, 1129, 1222
Ppu21I	YACGTR	2 cut(s)	1013, 1298
PpuMI	RGGWCCY	2 cut(s)	685, 2266
PscI	ACATGT	1 cut(s)	1262
PshBI	ATTAAT	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	1049
Psp124BI	GAGCTC	5 cut(s)	321, 332, 537, 1170, 1371
Psp5II	RGGWCCY	2 cut(s)	685, 2266
Psp6I	CCWGG	1 cut(s)	630
PspCI	CACGTG	1 cut(s)	1298
PspFI	CCCAGC	3 cut(s)	1064, 1592, 2347
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	3 cut(s)	686, 2294, 2352
PspPPI	RGGWCCY	2 cut(s)	685, 2266
PspXI	VCTCGAGB	1 cut(s)	1566
PsrI	GAACNNNNNNTAC	2 cut(s)	2465, 2497
PstI	CTGCAG	1 cut(s)	2152
PstNI	CAGNNNCTG	1 cut(s)	2156
PsuI	RGATCY	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	1346
RsaI	GTAC	2 cut(s)	2198, 2508
RsaNI	GTAC	2 cut(s)	2197, 2507
Rsr2I	CGGWCCG	1 cut(s)	1633
RsrII	CGGWCCG	1 cut(s)	1633
SacI	GAGCTC	5 cut(s)	321, 332, 537, 1170, 1371
SapI	GCTCTTC	1 cut(s)	1507
SaqAI	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2057
SatI	GCNGC	9 cut(s)	118, 400, 576, 579, 582, 1018, 1356, 1710, 2148
SchI	GAGTC	3 cut(s)	882, 1130, 1223
ScrFI	CCNGG	3 cut(s)	632, 832, 1991
SfaNI	GCATC	4 cut(s)	38, 411, 531, 986
SfcI	CTRYAG	2 cut(s)	1609, 2148
Sfr274I	CTCGAG	2 cut(s)	1566, 1889
SfuI	TTCGAA	1 cut(s)	1438
SinI	GGWCC	8 cut(s)	194, 685, 1394, 1519, 1633, 1855, 2116, 2266
SlaI	CTCGAG	2 cut(s)	1566, 1889
SmlI	CTYRAG	2 cut(s)	1566, 1889
SmoI	CTYRAG	2 cut(s)	1566, 1889
SseBI	AGGCCT	1 cut(s)	1958
SspI	AATATT	2 cut(s)	261, 2224
SspMI	CTAG	4 cut(s)	1229, 2138, 2207, 2217
SstI	GAGCTC	5 cut(s)	321, 332, 537, 1170, 1371
StuI	AGGCCT	1 cut(s)	1958
StyD4I	CCNGG	3 cut(s)	630, 830, 1989
StyI	CCWWGG	2 cut(s)	570, 1959
TaaI	ACNGT	9 cut(s)	543, 644, 909, 1322, 1633, 1859, 2090, 2292, 2387
TaiI	ACGT	4 cut(s)	597, 1015, 1085, 1300
TaqI	TCGA	7 cut(s)	321, 929, 1438, 1531, 1567, 1890, 1951
TaqII	GACCGA	2 cut(s)	2133, 2340
TatI	WGTACW	2 cut(s)	2196, 2506
TauI	GCSGC	6 cut(s)	120, 402, 578, 1020, 1358, 1712
TfiI	GAWTC	7 cut(s)	266, 1072, 1108, 1302, 1430, 2410, 2495
Tru1I	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2057
Tru9I	TTAA	9 cut(s)	62, 545, 806, 812, 923, 1424, 1554, 1998, 2057
TscAI	CASTG	7 cut(s)	276, 1851, 2157, 2206, 2260, 2454, 2509
TseFI	GTSAC	1 cut(s)	638
TseI	GCWGC	3 cut(s)	578, 581, 2147
Tsp45I	GTSAC	1 cut(s)	638
TspGWI	ACGGA	1 cut(s)	1930
TspRI	CASTG	7 cut(s)	276, 1851, 2157, 2206, 2260, 2454, 2509
Van91I	CCANNNNNTGG	2 cut(s)	747, 2389
VneI	GTGCAC	1 cut(s)	763
VpaK11BI	GGWCC	8 cut(s)	194, 685, 1394, 1519, 1633, 1855, 2116, 2266
VspI	ATTAAT	1 cut(s)	923
XapI	RAATTY	3 cut(s)	183, 855, 1374
XceI	RCATGY	1 cut(s)	1266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2110
XhoI	CTCGAG	2 cut(s)	1566, 1889
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	4 cut(s)	1229, 2138, 2207, 2217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.