Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Forward (+)

20394574 .. 20407696

Gene Structure 13123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGGCTTGGACGGATAAGGATGGTTGTAATGGGAAAGAAGGGGACCCAGTTGTAGAGAATGGATTCTTGAACTGTTCGCAGCCTTCTCCTAGTACCAGTGGCTCTCTTCTTGCTGGTGCAACTCCCGAAGGGGGGAAGAGTTTTGAAGTGAAAGAGACGATTTCTTATGCCAACATTCTTCGTTCAAGGAACAAGTTTTCTGATGCTCTTAGTCTTTATGAGACTGTGTTGGACAAAGATGCCAGAAATGTGGAAGCTCATATTGGGAAAGGAATATGCTTGCAAATGAAGAATATGGGAAGGCTTGCTTTTGACAGTTTCACGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCGCCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCAGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTGCTGGCAACACTCAAGATGGATTGCAGAAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCATATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTGCTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAATTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTACAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGACAGAGACAACCTTGATAAAGCAGTGGAGTGTTATCAGATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATAATTGCAAATCCCACATATGCAGAAGCATATAACAACCTAGGGGTTCTTTACAGAGATGCTGGCAATATTTCTCTGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAATGCAGGCCAGAACCGGTTGCTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGTTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCGGAACGTCCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGACAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTCGCAAGCATTGTTAGGGAAGATAAGATTGATATCTTGGTGGAACTTACTGGTCATACTGCTAACAACAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCAATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAAGCAGAAGCATGTTGAGCAGCTAGTTCGATTACCAGAATGCTTCCTTTGTTATACACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTCGCAAAGGTATTGAATAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCTCGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

697

Amino Acids

77.73

Weight (kDa)

5.83

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	193 - 219	4.6e-07	Tetratricopeptide repeat
TPR_1	PF00515	227 - 260	6e-10	Tetratricopeptide repeat
TPR_2	PF07719	227 - 259	6.1e-07	Tetratricopeptide repeat
TPR_8	PF13181	227 - 259	5e-08	Tetratricopeptide repeat
TPR_12	PF13424	227 - 295	7.2e-07	Tetratricopeptide repeat
TPR_1	PF00515	302 - 335	1e-05	Tetratricopeptide repeat
TPR_1	PF00515	336 - 369	6.6e-10	Tetratricopeptide repeat
TPR_2	PF07719	336 - 368	2.6e-06	Tetratricopeptide repeat
TPR_8	PF13181	336 - 368	9.4e-06	Tetratricopeptide repeat
TPR_11	PF13414	345 - 383	2.1e-06	TPR repeat
TPR_12	PF13424	371 - 434	1.4e-08	Tetratricopeptide repeat
TPR_16	PF13432	382 - 437	7.9e-07	Tetratricopeptide repeat
TPR_1	PF00515	404 - 436	1.2e-09	Tetratricopeptide repeat
TPR_2	PF07719	404 - 436	3.2e-07	Tetratricopeptide repeat
TPR_8	PF13181	404 - 436	2.1e-07	Tetratricopeptide repeat
Glyco_transf_41	PF13844	483 - 640	3.7e-23	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	591, 891
AccI	GTMKAC	3 cut(s)	606, 1137, 1402
AccIII	TCCGGA	1 cut(s)	1456
AciI	CCGC	2 cut(s)	397, 459
AclWI	GGATC	4 cut(s)	560, 1295, 1448, 1649
AcsI	RAATTY	3 cut(s)	775, 2060, 2079
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	3 cut(s)	94, 383, 917
AfiI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
AflII	CTTAAG	1 cut(s)	947
AgeI	ACCGGT	1 cut(s)	1329
AgsI	TTSAA	9 cut(s)	70, 146, 186, 559, 994, 1120, 1630, 1872, 2023
AhdI	GACNNNNNGTC	1 cut(s)	730
AhlI	ACTAGT	1 cut(s)	500
AjuI	GAANNNNNNNTTGG	4 cut(s)	246, 278, 644, 676
AloI	GAACNNNNNNTCC	2 cut(s)	969, 1001
AluBI	AGCT	8 cut(s)	257, 511, 554, 764, 1187, 1529, 1894, 1967
AluI	AGCT	8 cut(s)	257, 511, 554, 764, 1187, 1529, 1894, 1967
Alw26I	GTCTC	3 cut(s)	149, 215, 1041
AlwI	GGATC	4 cut(s)	560, 1295, 1448, 1649
AlwNI	CAGNNNCTG	2 cut(s)	1395, 1949
Aor13HI	TCCGGA	1 cut(s)	1456
AoxI	GGCC	6 cut(s)	327, 394, 668, 1321, 1769, 1946
ApeKI	GCWGC	8 cut(s)	79, 410, 461, 656, 1163, 1166, 1891, 2043
ApoI	RAATTY	3 cut(s)	775, 2060, 2079
AsiGI	ACCGGT	1 cut(s)	1329
Asp700I	GAANNNNTTC	1 cut(s)	62
AspA2I	CCTAGG	1 cut(s)	1228
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	3 cut(s)	43, 394, 1946
AsuHPI	GGTGA	1 cut(s)	950
AvaII	GGWCC	1 cut(s)	43
AvrII	CCTAGG	1 cut(s)	1228
AxyI	CCTNAGG	2 cut(s)	401, 1938
BaeGI	GKGCMC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	566
BbvI	GCAGC	8 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2030
BccI	CCATC	5 cut(s)	14, 338, 524, 1075, 1150
BceAI	ACGGC	1 cut(s)	648
BcgI	CGANNNNNNTGC	2 cut(s)	1880, 1914
BcoDI	GTCTC	3 cut(s)	149, 215, 1041
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
BfmI	CTRYAG	1 cut(s)	1578
BfoI	RGCGCY	1 cut(s)	638
BfrI	CTTAAG	1 cut(s)	947
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	9 cut(s)	80, 397, 411, 462, 657, 1164, 1167, 1892, 2044
BlnI	CCTAGG	1 cut(s)	1228
BlsI	GCNGC	9 cut(s)	81, 398, 412, 463, 658, 1165, 1168, 1893, 2045
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	730
BmgT120I	GGNCC	3 cut(s)	43, 394, 1946
BmiI	GGNNCC	2 cut(s)	44, 45
BmrI	ACTGGG	2 cut(s)	41, 1405
BmsI	GCATC	8 cut(s)	193, 229, 609, 898, 1150, 1237, 1264, 1585
BmuI	ACTGGG	2 cut(s)	41, 1405
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	2 cut(s)	1666, 1947
BpuEI	CTTGAG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	852
BsaBI	GATNNNNATC	3 cut(s)	852, 1483, 1709
BsaJI	CCNNGG	2 cut(s)	595, 1228
BsaWI	WCCGGW	2 cut(s)	1329, 1456
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
Bse118I	RCCGGY	2 cut(s)	1329, 1767
Bse1I	ACTGG	7 cut(s)	47, 96, 899, 1400, 1732, 1819, 1857
Bse21I	CCTNAGG	2 cut(s)	401, 1938
Bse3DI	GCAATG	2 cut(s)	1292, 1347
Bse8I	GATNNNNATC	3 cut(s)	852, 1483, 1709
BseAI	TCCGGA	1 cut(s)	1456
BseCI	ATCGAT	1 cut(s)	852
BseDI	CCNNGG	2 cut(s)	595, 1228
BseGI	GGATG	2 cut(s)	25, 1165
BseJI	GATNNNNATC	3 cut(s)	852, 1483, 1709
BseLI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
BseMI	GCAATG	2 cut(s)	1292, 1347
BseMII	CTCAG	4 cut(s)	357, 405, 1929, 2081
BseNI	ACTGG	7 cut(s)	47, 96, 899, 1400, 1732, 1819, 1857
BseRI	GAGGAG	1 cut(s)	1521
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	8 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2030
BsgI	GTGCAG	2 cut(s)	1026, 1758
BshFI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
BshTI	ACCGGT	1 cut(s)	1329
BshVI	ATCGAT	1 cut(s)	852
BsiSI	CCGG	3 cut(s)	1330, 1457, 1768
BslFI	GGGAC	5 cut(s)	56, 1406, 1449, 1454, 1631
BslI	CCNNNNNNNGG	5 cut(s)	131, 132, 403, 406, 1943
BsmAI	GTCTC	3 cut(s)	149, 215, 1041
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	5 cut(s)	56, 1406, 1449, 1454, 1631
BsmI	GAATGC	4 cut(s)	355, 442, 473, 1916
BsnI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp13I	TCCGGA	1 cut(s)	1456
Bsp1407I	TGTACA	2 cut(s)	381, 915
Bsp143I	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
BspACI	CCGC	2 cut(s)	397, 459
BspANI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
BspCNI	CTCAG	4 cut(s)	356, 406, 1930, 2080
BspDI	ATCGAT	1 cut(s)	852
BspEI	TCCGGA	1 cut(s)	1456
BspHI	TCATGA	1 cut(s)	1354
BspLI	GGNNCC	2 cut(s)	44, 45
BspMAI	CTGCAG	1 cut(s)	1582
BspPI	GGATC	4 cut(s)	560, 1295, 1448, 1649
BspTI	CTTAAG	1 cut(s)	947
BsrDI	GCAATG	2 cut(s)	1292, 1347
BsrFI	RCCGGY	2 cut(s)	1329, 1767
BsrGI	TGTACA	2 cut(s)	381, 915
BsrI	ACTGG	7 cut(s)	47, 96, 899, 1400, 1732, 1819, 1857
BssAI	RCCGGY	2 cut(s)	1329, 1767
BssECI	CCNNGG	2 cut(s)	595, 1228
BssMI	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
BssT1I	CCWWGG	2 cut(s)	595, 1228
Bst4CI	ACNGT	5 cut(s)	74, 226, 317, 1113, 1144
Bst6I	CTCTTC	2 cut(s)	111, 131
BstAFI	CTTAAG	1 cut(s)	947
BstAUI	TGTACA	2 cut(s)	381, 915
BstDEI	CTNAG	8 cut(s)	209, 343, 401, 414, 1468, 1599, 1938, 2067
BstEII	GGTNACC	1 cut(s)	1799
BstENI	CCTNNNNNAGG	2 cut(s)	404, 1941
BstF5I	GGATG	2 cut(s)	25, 1165
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	7 cut(s)	493, 568, 856, 1303, 1456, 1644, 2030
BstMAI	GTCTC	3 cut(s)	149, 215, 1041
BstMBI	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
BstMWI	GCNNNNNNNGC	6 cut(s)	437, 699, 1193, 1274, 1535, 1888
BstNSI	RCATGY	3 cut(s)	357, 1767, 1886
BstPI	GGTNACC	1 cut(s)	1799
BstSFI	CTRYAG	1 cut(s)	1578
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	8 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2030
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
BstXI	CCANNNNNNTGG	2 cut(s)	250, 337
BstYI	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
Bsu15I	ATCGAT	1 cut(s)	852
Bsu36I	CCTNAGG	2 cut(s)	401, 1938
BsuRI	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
BsuTUI	ATCGAT	1 cut(s)	852
BtsCI	GGATG	2 cut(s)	25, 1165
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	4 cut(s)	103, 1071, 1140, 1850
CaiI	CAGNNNCTG	2 cut(s)	1395, 1949
CciI	TCATGA	1 cut(s)	1354
CfoI	GCGC	1 cut(s)	637
Cfr10I	RCCGGY	2 cut(s)	1329, 1767
Cfr13I	GGNCC	3 cut(s)	43, 394, 1946
ClaI	ATCGAT	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	93, 382, 916
CspAI	ACCGGT	1 cut(s)	1329
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	8 cut(s)	354, 697, 958, 1174, 1355, 1544, 1764, 1883
CviQI	GTAC	3 cut(s)	93, 382, 916
DdeI	CTNAG	8 cut(s)	209, 343, 401, 414, 1468, 1599, 1938, 2067
DpnI	GATC	7 cut(s)	492, 567, 855, 1302, 1455, 1643, 2029
DpnII	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
DraI	TTTAAA	1 cut(s)	507
DriI	GACNNNNNGTC	1 cut(s)	730
Eam1104I	CTCTTC	2 cut(s)	111, 131
Eam1105I	GACNNNNNGTC	1 cut(s)	730
EarI	CTCTTC	2 cut(s)	111, 131
Eco130I	CCWWGG	2 cut(s)	595, 1228
Eco32I	GATATC	2 cut(s)	850, 1711
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	702
Eco81I	CCTNAGG	2 cut(s)	401, 1938
Eco91I	GGTNACC	1 cut(s)	1799
EcoNI	CCTNNNNNAGG	2 cut(s)	404, 1941
EcoO109I	RGGNCCY	2 cut(s)	43, 1946
EcoO65I	GGTNACC	1 cut(s)	1799
EcoRI	GAATTC	1 cut(s)	2060
EcoRV	GATATC	2 cut(s)	850, 1711
EcoT14I	CCWWGG	2 cut(s)	595, 1228
EcoT22I	ATGCAT	2 cut(s)	355, 1279
ErhI	CCWWGG	2 cut(s)	595, 1228
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	8 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886
FalI	AAGNNNNNCTT	4 cut(s)	292, 324, 1518, 1550
FaqI	GGGAC	5 cut(s)	56, 1406, 1449, 1454, 1631
FatI	CATG	8 cut(s)	353, 696, 957, 1173, 1354, 1543, 1763, 1882
FauI	CCCGC	1 cut(s)	466
FauNDI	CATATG	2 cut(s)	1207, 1279
FblI	GTMKAC	3 cut(s)	606, 1137, 1402
Fnu4HI	GCNGC	9 cut(s)	80, 397, 411, 462, 657, 1164, 1167, 1892, 2044
FokI	GGATG	2 cut(s)	32, 1172
Fsp4HI	GCNGC	9 cut(s)	80, 397, 411, 462, 657, 1164, 1167, 1892, 2044
FspBI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	9 cut(s)	80, 397, 411, 462, 657, 1164, 1167, 1892, 2044
GsuI	CTGGAG	2 cut(s)	1666, 1947
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	6 cut(s)	329, 396, 670, 1323, 1771, 1948
HapII	CCGG	3 cut(s)	1330, 1457, 1768
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	8 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HindIII	AAGCTT	2 cut(s)	509, 552
HinfI	GANTC	9 cut(s)	63, 341, 416, 731, 1307, 1839, 1847, 1859, 1868
HpaII	CCGG	3 cut(s)	1330, 1457, 1768
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	3 cut(s)	607, 1138, 1403
Hpy188I	TCNGA	5 cut(s)	202, 346, 435, 613, 1080
Hpy8I	GTNNAC	3 cut(s)	607, 1138, 1403
HpyCH4III	ACNGT	5 cut(s)	74, 226, 317, 1113, 1144
HpyCH4IV	ACGT	2 cut(s)	1405, 1462
HpyF10VI	GCNNNNNNNGC	6 cut(s)	437, 699, 1193, 1274, 1535, 1888
HpyF3I	CTNAG	8 cut(s)	209, 343, 401, 414, 1468, 1599, 1938, 2067
HpySE526I	ACGT	2 cut(s)	1405, 1462
Hsp92II	CATG	8 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886
HspAI	GCGC	1 cut(s)	635
KflI	GGGWCCC	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	1456
KroI	GCCGGC	1 cut(s)	1767
KroNI	GCCGGC	1 cut(s)	1769
Kzo9I	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
LmnI	GCTCC	2 cut(s)	583, 1534
Lsp1109I	GCAGC	8 cut(s)	91, 397, 448, 643, 1150, 1153, 1903, 2030
LweI	GCATC	8 cut(s)	193, 229, 609, 898, 1150, 1237, 1264, 1585
MaeI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
MaeII	ACGT	2 cut(s)	1405, 1462
MaeIII	GTNAC	3 cut(s)	746, 1786, 1799
MalI	GATC	7 cut(s)	492, 567, 855, 1302, 1455, 1643, 2029
MboI	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
MboII	GAAGA	6 cut(s)	98, 148, 170, 301, 571, 1709
MfeI	CAATTG	2 cut(s)	963, 1827
MflI	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
MhlI	GDGCHC	1 cut(s)	361
MlyI	GAGTC	3 cut(s)	335, 425, 740
MmeI	TCCRAC	2 cut(s)	210, 318
Mph1103I	ATGCAT	2 cut(s)	355, 1279
MroI	TCCGGA	1 cut(s)	1456
MroNI	GCCGGC	1 cut(s)	1767
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
MslI	CAYNNNNRTG	1 cut(s)	1548
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	3 cut(s)	1330, 1457, 1768
MunI	CAATTG	2 cut(s)	963, 1827
Mva1269I	GAATGC	4 cut(s)	355, 442, 473, 1916
MwoI	GCNNNNNNNGC	6 cut(s)	437, 699, 1193, 1274, 1535, 1888
NaeI	GCCGGC	1 cut(s)	1769
NdeI	CATATG	2 cut(s)	1207, 1279
NdeII	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
NgoMIV	GCCGGC	1 cut(s)	1767
NlaIII	CATG	8 cut(s)	357, 700, 961, 1177, 1358, 1547, 1767, 1886
NlaIV	GGNNCC	2 cut(s)	44, 45
NsiI	ATGCAT	2 cut(s)	355, 1279
NspI	RCATGY	3 cut(s)	357, 1767, 1886
PaeI	GCATGC	1 cut(s)	1767
PagI	TCATGA	1 cut(s)	1354
PctI	GAATGC	4 cut(s)	355, 442, 473, 1916
PdiI	GCCGGC	1 cut(s)	1769
PdmI	GAANNNNTTC	1 cut(s)	62
PfeI	GAWTC	6 cut(s)	63, 1307, 1839, 1847, 1859, 1868
PflFI	GACNNNGTC	1 cut(s)	1622
PinAI	ACCGGT	1 cut(s)	1329
PkrI	GCNGC	9 cut(s)	81, 398, 412, 463, 658, 1165, 1168, 1893, 2045
PleI	GAGTC	3 cut(s)	335, 424, 739
PpsI	GAGTC	3 cut(s)	335, 424, 739
PpuMI	RGGWCCY	1 cut(s)	43
PsiI	TTATAA	2 cut(s)	591, 891
Psp5II	RGGWCCY	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	1799
PspN4I	GGNNCC	2 cut(s)	44, 45
PspPI	GGNCC	3 cut(s)	43, 394, 1946
PspPPI	RGGWCCY	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	1582
PstNI	CAGNNNCTG	2 cut(s)	1395, 1949
PsuI	RGATCY	5 cut(s)	490, 565, 1300, 1453, 1641
PsyI	GACNNNGTC	1 cut(s)	1622
RsaI	GTAC	3 cut(s)	94, 383, 917
RsaNI	GTAC	3 cut(s)	93, 382, 916
RseI	CAYNNNNRTG	1 cut(s)	1548
SaqAI	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
SatI	GCNGC	9 cut(s)	80, 397, 411, 462, 657, 1164, 1167, 1892, 2044
Sau3AI	GATC	7 cut(s)	490, 565, 853, 1300, 1453, 1641, 2027
Sau96I	GGNCC	3 cut(s)	43, 394, 1946
SchI	GAGTC	3 cut(s)	335, 425, 740
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	8 cut(s)	193, 229, 609, 898, 1150, 1237, 1264, 1585
SfcI	CTRYAG	1 cut(s)	1578
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	1548
SmlI	CTYRAG	2 cut(s)	525, 947
SmoI	CTYRAG	2 cut(s)	525, 947
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	1767
SsiI	CCGC	2 cut(s)	397, 459
SspI	AATATT	1 cut(s)	1258
SspMI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
StyI	CCWWGG	2 cut(s)	595, 1228
TaaI	ACNGT	5 cut(s)	74, 226, 317, 1113, 1144
TaiI	ACGT	2 cut(s)	1408, 1465
TaqI	TCGA	2 cut(s)	852, 1900
TatI	WGTACW	2 cut(s)	381, 915
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	6 cut(s)	63, 1307, 1839, 1847, 1859, 1868
Tru1I	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
Tru9I	TTAA	6 cut(s)	485, 506, 834, 948, 1293, 2001
TscAI	CASTG	4 cut(s)	103, 1071, 1147, 1857
TseI	GCWGC	8 cut(s)	79, 410, 461, 656, 1163, 1166, 1891, 2043
TspDTI	ATGAA	9 cut(s)	302, 438, 564, 990, 1343, 1358, 1371, 1560, 1683
TspGWI	ACGGA	2 cut(s)	26, 338
TspRI	CASTG	4 cut(s)	103, 1071, 1147, 1857
Tth111I	GACNNNGTC	1 cut(s)	1622
Vha464I	CTTAAG	1 cut(s)	947
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	2 cut(s)	404, 1941
XapI	RAATTY	3 cut(s)	775, 2060, 2079
XceI	RCATGY	3 cut(s)	357, 1767, 1886
XmaJI	CCTAGG	1 cut(s)	1228
XmiI	GTMKAC	3 cut(s)	606, 1137, 1402
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	6 cut(s)	90, 473, 501, 761, 1229, 1895
Zsp2I	ATGCAT	2 cut(s)	355, 1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.