Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Reverse (-)

29632117 .. 29641624

Gene Structure 9508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023896

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2802 bp

ATGGGATTAAACCAAAGTGGCTACTATTATTGGAAGCCCTTAGCCCTTAGACACAGAGAGCCCGGACCCTTCTCTCTCTCTCTCTCTTCTTTACCCTTGAAGGAGCTCATTGAAATCCCACTGTTGAATTTGGTCCAAGAAATTGGGAGTGGCTCTCTTCTTGCTGGTGCAACTCCGGATGGGGGGAAGAGTTTTGAAGTGAAAGAGACAATTTCTTATGCGAACATTCTTCGTTCAAGGAACAAGTTTTCTGATGCTCTTAGTTTTTACGAGACTGTGTTGGAGAAAGATGCCGGAAATGTGGAAGCTCATATTGGGAAAGGAATATGCTTGCAAATGAAGAATATGGGAAGGCTTGCTTTTGACAGTTTCATGGAGGCCATCAAGTTGGACTCAGAGAATGCATGTGCCCTCACGCATTGTGGTATTTTGTACAAAGATGAGGGCCGCCTAAGGGAGGCTGCTGAGTCGTATCAAAAGGCTCTGAATGCAGACCCTTCATACAAACCCGCTGCTGAATGCCTAGCCATTGTATTAACAGATCTTGGAACTAGTTTAAAGCTTGCTGGCAACACTCAAGATGGATTGCAGAAGTATTATGAAGCTTTGAAGACAGATCCACACTATGCTCCTGCTTATTATAACCTTGGTGTTGTCTACTCTGAAATGATGCAATTTGACACGGCGCTTACTTGCTATGAGAAGGCTGCATTGGAGAGGCCGATGTATGCTGAAGCGTATTGCAACATGGGCGTTATTTACAAAAATCGTGGCGACTTGGAGTCTGCTATTGCTTGTTACGAGAGGTGTCTAGCTGTTTCGCCAAACTTTGAGATTGCAAAGAATAATATGGCAATAGCCTTGACAGATTTAGGAACAAAGGTTAAATTGGAGGGAGATATCGATCAAGGCATAGCATATTACAAGAAGGCTTTGTATTATAACTGGCACTATGCTGATGCTATGTACAATCTTGGGGTTGCTTATGGTGAAATGCTTAAGTTTGACATGGCAATTGTGTTCTATGAACTTGCTTTCCACTTCAATCCCCATTGTGCAGAGGCGTGCAATAATTTGGGAGTAATATACAAAGATAGAGACAACCTTGATAAAGCAGTGGAGTGTTATCAGATGGCTTTGTCAATCAAACCAAACTTCTCACAGTCATTGAACAATCTTGGAGTTGTCTACACTGTTCAGGGTAAGATGGATGCTGCTGCAAGCATGATTGAGAAAGCTATAATTGCAAATCCCACATATGCAGAAGCATATAACAATCTAGGGGTTCTTTACAGAGATGCTGGCAATATTTCTATGGCTATTGATGCATATGAGCAATGCCTTAAAATAGATCCTGATTCACGAAACGCAGGCCAGAACCGGTTACTTGCAATGAACTACATTCATGAAGGACAAGATGATAAACTTTTTGTGGCTCACAGGGACTGGGGTAGACGTTTTATGAGGCTATTCTCACAGCACACTTCTTGGGACAATCTAAAAGATCCGGAACGACCCTTAGTGATTGGATATGTATCTCCCGATTATTTTACTCACTCTGTATCATATTTTATAGAAGCTCCTCTTGCCCACCATGAATATGCAAAATACAAAGTGGTTGTTTATTCTGCAGTTGTGAAGGCAGATGCTAAGACTATCAGGTTTAGGGAGAAAGTCTTGAAAAAGGGTGGGATCTGGAGAGATATTTATGGGATTGATGAAAAAAAAGTTGCAAGCATTGTTAGGGAAGATAAGATTGATATCTTGGTGGAACTTACTGGTCATACTGCTAACAATAAGTTGGGAACAATGGCATGCCGGCCTGCACCTGTTCAGGTTACTTGGATTGGTTACCCAAACACAACTGGTTTGCCAGCGATTGATTATAGAATCACAGATTCACTGGCAGATTCTCCTGATTCAAAGCAGAAGCATGTTGAGGAGCTAGTTCGATTACCGGAATGCTTCCTTTGTTATACACCTTCCCCTGAGGCAGGGCCTGTTTCCCCTACTCCAGCTCTTTCCAATGGCTTTATTACATTTGGAAGTTTTAATAATCTCGCAAAGATCACACCAAAAGTGCTGCAAGTTTGGGCAAGAATTCTCTCAGCAATTCCAAATTCCCGCCTTGTAGTAAAATGTAAGCCCTTTAGTTGCGATAGTGTGAGAGAGAGATTTCTTTCAACATTGGAGCAGCTGGGGTTGGAACCACTACGTGTTGATCTTCTGCCTCTAATTTTACTCAATTACGATCATATGCAAGCATATTCTCTCATGGACATTAGTTTGGATACTTTTCCTTATGCTGGAACAACCACGACATGTGAATCTTTATATATGGGCGTTCCATGTGTTACTATGGCTGGTTCAGTACATGCACACAATGTCGGTGTTAGTATTCTCAGCACAGTGGGATTGGGAAACCTTATTGCTAAAAATGAGGAAGAATATGTTCAGTTGGCTGTGCAGTTGGCCTCTGACATAACAGCACTTTCAAATCTGAGGATGAGTCTGCGAGACCTCATGTCCAGGTCGCCTGTCTGTGATGGACCAAAGTTTACCCTTGGGCTGGAGTCGGCATACAGGAACATGTGGCGCAGGTACTGCAAAGGTGATGTGCCATCACAACGGCACATGGAAATACTACAACAGGAGGTAACCCCTGAAGAGCCAACTAACAAAATGGCTGAACCAATAAGGATTACCGAATCAGGTTTTCCTGCATCGATTAAGTCCAATGGATTTAATCCTTGTCCAACACCTATGCCTAATCTCTCTTCTAGTGAAGAAAATGGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

934

Amino Acids

103.96

Weight (kDa)

5.73

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	210 - 236	6.5e-07	Tetratricopeptide repeat
TPR_1	PF00515	244 - 277	8.5e-10	Tetratricopeptide repeat
TPR_2	PF07719	244 - 276	8.7e-07	Tetratricopeptide repeat
TPR_8	PF13181	244 - 276	7e-08	Tetratricopeptide repeat
TPR_12	PF13424	244 - 312	1.1e-06	Tetratricopeptide repeat
TPR_1	PF00515	353 - 386	9.3e-10	Tetratricopeptide repeat
TPR_2	PF07719	353 - 385	3.7e-06	Tetratricopeptide repeat
TPR_11	PF13414	362 - 400	3e-06	TPR repeat
TPR_12	PF13424	388 - 451	1.7e-08	Tetratricopeptide repeat
TPR_1	PF00515	421 - 453	9e-10	Tetratricopeptide repeat
TPR_2	PF07719	421 - 453	2.9e-07	Tetratricopeptide repeat
TPR_8	PF13181	421 - 453	1.6e-07	Tetratricopeptide repeat
Glyco_transf_41	PF13844	500 - 657	6.3e-23	Glycosyl transferase family 41
Glyco_transf_41	PF13844	674 - 853	1.5e-25	Glycosyl transferase family 41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	642, 942
Acc36I	ACCTGC	1 cut(s)	2589
AccI	GTMKAC	3 cut(s)	657, 1188, 1453
AccIII	TCCGGA	2 cut(s)	175, 1507
AciI	CCGC	3 cut(s)	448, 510, 2125
AclWI	GGATC	4 cut(s)	611, 1346, 1499, 1700
AcsI	RAATTY	3 cut(s)	127, 2100, 2119
AcuI	CTGAAG	2 cut(s)	753, 2685
AdeI	CACNNNGTG	1 cut(s)	2216
AfaI	GTAC	4 cut(s)	434, 968, 2373, 2603
AfiI	CCNNNNNNNGG	6 cut(s)	182, 454, 457, 1994, 2306, 2569
AflII	CTTAAG	1 cut(s)	998
AflIII	ACRYGT	3 cut(s)	2215, 2321, 2589
AgeI	ACCGGT	1 cut(s)	1380
AhdI	GACNNNNNGTC	2 cut(s)	781, 2524
AhlI	ACTAGT	1 cut(s)	551
AjnI	CCWGG	1 cut(s)	2528
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 695, 727
AloI	GAACNNNNNNTCC	2 cut(s)	1020, 1052
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	4 cut(s)	200, 266, 1092, 2511
AlwI	GGATC	4 cut(s)	611, 1346, 1499, 1700
AlwNI	CAGNNNCTG	3 cut(s)	1446, 2000, 2604
Aor13HI	TCCGGA	2 cut(s)	175, 1507
AoxI	GGCC	7 cut(s)	378, 445, 719, 1372, 1820, 1997, 2472
ApeKI	GCWGC	7 cut(s)	461, 512, 707, 1214, 1217, 2083, 2194
ApoI	RAATTY	3 cut(s)	127, 2100, 2119
AsiGI	ACCGGT	1 cut(s)	1380
Asp700I	GAANNNNTTC	1 cut(s)	2451
AspLEI	GCGC	2 cut(s)	688, 2598
AspS9I	GGNCC	5 cut(s)	65, 133, 445, 1997, 2549
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	1001, 2624
AvaII	GGWCC	3 cut(s)	65, 133, 2549
AxyI	CCTNAGG	2 cut(s)	452, 1989
BaeGI	GKGCMC	1 cut(s)	412
BanII	GRGCYC	2 cut(s)	63, 108
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	7 cut(s)	448, 499, 694, 1201, 1204, 2070, 2206
BccI	CCATC	7 cut(s)	173, 389, 575, 1126, 1201, 2540, 2629
BceAI	ACGGC	2 cut(s)	699, 2645
BciT130I	CCWGG	1 cut(s)	2530
BciVI	GTATCC	1 cut(s)	2284
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	4 cut(s)	200, 266, 1092, 2511
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	6 cut(s)	524, 552, 812, 1280, 1946, 2781
BfmI	CTRYAG	1 cut(s)	1629
BfoI	RGCGCY	1 cut(s)	689
BfrI	CTTAAG	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	2589
BfuI	GTATCC	1 cut(s)	2284
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	8 cut(s)	448, 462, 513, 708, 1215, 1218, 2084, 2195
BlsI	GCNGC	8 cut(s)	449, 463, 514, 709, 1216, 1219, 2085, 2196
Bme1390I	CCNGG	2 cut(s)	63, 2530
Bme18I	GGWCC	3 cut(s)	65, 133, 2549
BmeRI	GACNNNNNGTC	2 cut(s)	781, 2524
BmgT120I	GGNCC	5 cut(s)	65, 133, 445, 1997, 2549
BmiI	GGNNCC	2 cut(s)	67, 2208
BmrFI	CCNGG	2 cut(s)	63, 2530
BmrI	ACTGGG	1 cut(s)	1456
BmsI	GCATC	9 cut(s)	244, 280, 660, 949, 1201, 1288, 1315, 1636, 2732
BmuI	ACTGGG	1 cut(s)	1456
BpiI	GAAGAC	1 cut(s)	617
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	3 cut(s)	1717, 1998, 2591
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	2 cut(s)	903, 2726
BsaAI	YACGTR	1 cut(s)	2216
BsaBI	GATNNNNATC	3 cut(s)	903, 1534, 1760
BsaI	GGTCTC	1 cut(s)	2511
BsaJI	CCNNGG	2 cut(s)	646, 2563
BsaWI	WCCGGW	4 cut(s)	175, 1380, 1507, 1957
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 454, 457, 1994, 2306, 2569
Bse118I	RCCGGY	2 cut(s)	1380, 1818
Bse1I	ACTGG	5 cut(s)	950, 1451, 1783, 1870, 1908
Bse21I	CCTNAGG	2 cut(s)	452, 1989
Bse3DI	GCAATG	2 cut(s)	1343, 1398
Bse8I	GATNNNNATC	3 cut(s)	903, 1534, 1760
BseAI	TCCGGA	2 cut(s)	175, 1507
BseBI	CCWGG	1 cut(s)	2530
BseCI	ATCGAT	2 cut(s)	903, 2726
BseDI	CCNNGG	2 cut(s)	646, 2563
BseGI	GGATG	3 cut(s)	184, 1216, 2511
BseJI	GATNNNNATC	3 cut(s)	903, 1534, 1760
BseLI	CCNNNNNNNGG	6 cut(s)	182, 454, 457, 1994, 2306, 2569
BseMI	GCAATG	2 cut(s)	1343, 1398
BseMII	CTCAG	6 cut(s)	408, 456, 1980, 2121, 2416, 2492
BseNI	ACTGG	5 cut(s)	950, 1451, 1783, 1870, 1908
BseRI	GAGGAG	2 cut(s)	1572, 1955
BseSI	GKGCMC	1 cut(s)	412
BseXI	GCAGC	7 cut(s)	448, 499, 694, 1201, 1204, 2070, 2206
BseYI	CCCAGC	1 cut(s)	2197
BsgI	GTGCAG	3 cut(s)	1077, 1809, 2486
BshFI	GGCC	7 cut(s)	380, 447, 721, 1374, 1822, 1999, 2474
BshTI	ACCGGT	1 cut(s)	1380
BshVI	ATCGAT	2 cut(s)	903, 2726
BsiHKAI	GWGCWC	1 cut(s)	108
BsiSI	CCGG	7 cut(s)	63, 176, 294, 1381, 1508, 1819, 1958
BslFI	GGGAC	2 cut(s)	1457, 1505
BslI	CCNNNNNNNGG	6 cut(s)	182, 454, 457, 1994, 2306, 2569
BsmAI	GTCTC	4 cut(s)	200, 266, 1092, 2511
BsmFI	GGGAC	2 cut(s)	1457, 1505
BsmI	GAATGC	4 cut(s)	406, 493, 524, 1967
BsnI	GGCC	7 cut(s)	380, 447, 721, 1374, 1822, 1999, 2474
Bso31I	GGTCTC	1 cut(s)	2511
Bsp1286I	GDGCHC	3 cut(s)	63, 108, 412
Bsp13I	TCCGGA	2 cut(s)	175, 1507
Bsp1407I	TGTACA	2 cut(s)	432, 966
Bsp143I	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
BspACI	CCGC	3 cut(s)	448, 510, 2125
BspANI	GGCC	7 cut(s)	380, 447, 721, 1374, 1822, 1999, 2474
BspCNI	CTCAG	6 cut(s)	407, 457, 1981, 2120, 2415, 2493
BspDI	ATCGAT	2 cut(s)	903, 2726
BspEI	TCCGGA	2 cut(s)	175, 1507
BspHI	TCATGA	1 cut(s)	1405
BspLI	GGNNCC	2 cut(s)	67, 2208
BspMAI	CTGCAG	1 cut(s)	1633
BspMI	ACCTGC	1 cut(s)	2589
BspPI	GGATC	4 cut(s)	611, 1346, 1499, 1700
BspQI	GCTCTTC	1 cut(s)	2661
BspTI	CTTAAG	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	2511
BsrDI	GCAATG	2 cut(s)	1343, 1398
BsrFI	RCCGGY	2 cut(s)	1380, 1818
BsrGI	TGTACA	2 cut(s)	432, 966
BsrI	ACTGG	5 cut(s)	950, 1451, 1783, 1870, 1908
BssAI	RCCGGY	2 cut(s)	1380, 1818
BssECI	CCNNGG	2 cut(s)	646, 2563
BssMI	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
BssT1I	CCWWGG	2 cut(s)	646, 2563
Bst2UI	CCWGG	1 cut(s)	2530
Bst4CI	ACNGT	6 cut(s)	123, 277, 368, 1164, 1195, 2410
Bst6I	CTCTTC	5 cut(s)	91, 162, 182, 2661, 2782
BstAFI	CTTAAG	1 cut(s)	998
BstAPI	GCANNNNNTGC	1 cut(s)	2604
BstAUI	TGTACA	2 cut(s)	432, 966
BstBAI	YACGTR	1 cut(s)	2216
BstEII	GGTNACC	2 cut(s)	1850, 2656
BstENI	CCTNNNNNAGG	2 cut(s)	455, 1992
BstF5I	GGATG	3 cut(s)	184, 1216, 2511
BstH2I	RGCGCY	1 cut(s)	689
BstHHI	GCGC	2 cut(s)	688, 2598
BstKTI	GATC	9 cut(s)	544, 619, 907, 1354, 1507, 1695, 2070, 2224, 2254
BstMAI	GTCTC	4 cut(s)	200, 266, 1092, 2511
BstMBI	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
BstMWI	GCNNNNNNNGC	6 cut(s)	488, 750, 1244, 1325, 1586, 2604
BstNI	CCWGG	1 cut(s)	2530
BstNSI	RCATGY	6 cut(s)	408, 1818, 1937, 2325, 2378, 2593
BstPI	GGTNACC	2 cut(s)	1850, 2656
BstSCI	CCNGG	2 cut(s)	61, 2528
BstSFI	CTRYAG	1 cut(s)	1629
BstSLI	GKGCMC	1 cut(s)	412
BstV1I	GCAGC	7 cut(s)	448, 499, 694, 1201, 1204, 2070, 2206
BstV2I	GAAGAC	1 cut(s)	617
BstX2I	RGATCY	5 cut(s)	541, 616, 1351, 1504, 1692
BstXI	CCANNNNNNTGG	2 cut(s)	143, 388
BstYI	RGATCY	5 cut(s)	541, 616, 1351, 1504, 1692
Bsu15I	ATCGAT	2 cut(s)	903, 2726
Bsu36I	CCTNAGG	2 cut(s)	452, 1989
BsuI	GTATCC	1 cut(s)	2284
BsuRI	GGCC	7 cut(s)	380, 447, 721, 1374, 1822, 1999, 2474
BsuTUI	ATCGAT	2 cut(s)	903, 2726
BtsCI	GGATG	3 cut(s)	184, 1216, 2511
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	5 cut(s)	119, 1122, 1191, 1901, 2415
BveI	ACCTGC	1 cut(s)	2589
CaiI	CAGNNNCTG	3 cut(s)	1446, 2000, 2604
CciI	TCATGA	1 cut(s)	1405
CfoI	GCGC	2 cut(s)	688, 2598
Cfr10I	RCCGGY	2 cut(s)	1380, 1818
Cfr13I	GGNCC	5 cut(s)	65, 133, 445, 1997, 2549
ClaI	ATCGAT	2 cut(s)	903, 2726
Csp6I	GTAC	4 cut(s)	433, 967, 2372, 2602
CspAI	ACCGGT	1 cut(s)	1380
CspCI	CAANNNNNGTGG	2 cut(s)	751, 786
CviQI	GTAC	4 cut(s)	433, 967, 2372, 2602
DpnI	GATC	9 cut(s)	543, 618, 906, 1353, 1506, 1694, 2069, 2223, 2253
DpnII	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
DraI	TTTAAA	1 cut(s)	558
DraIII	CACNNNGTG	1 cut(s)	2216
DriI	GACNNNNNGTC	2 cut(s)	781, 2524
Eam1104I	CTCTTC	5 cut(s)	91, 162, 182, 2661, 2782
Eam1105I	GACNNNNNGTC	2 cut(s)	781, 2524
EarI	CTCTTC	5 cut(s)	91, 162, 182, 2661, 2782
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	646, 2563
Eco24I	GRGCYC	2 cut(s)	63, 108
Eco31I	GGTCTC	1 cut(s)	2511
Eco32I	GATATC	2 cut(s)	901, 1762
Eco47I	GGWCC	3 cut(s)	65, 133, 2549
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	753, 2685
Eco81I	CCTNAGG	2 cut(s)	452, 1989
Eco91I	GGTNACC	2 cut(s)	1850, 2656
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	2 cut(s)	455, 1992
EcoO109I	RGGNCCY	1 cut(s)	1997
EcoO65I	GGTNACC	2 cut(s)	1850, 2656
EcoRI	GAATTC	1 cut(s)	2100
EcoRII	CCWGG	1 cut(s)	2528
EcoRV	GATATC	2 cut(s)	901, 1762
EcoT14I	CCWWGG	2 cut(s)	646, 2563
EcoT22I	ATGCAT	2 cut(s)	406, 1330
EcoT38I	GRGCYC	2 cut(s)	63, 108
ErhI	CCWWGG	2 cut(s)	646, 2563
FalI	AAGNNNNNCTT	4 cut(s)	343, 375, 1569, 1601
FaqI	GGGAC	2 cut(s)	1457, 1505
FauI	CCCGC	2 cut(s)	517, 2132
FauNDI	CATATG	3 cut(s)	1258, 1330, 2256
FblI	GTMKAC	3 cut(s)	657, 1188, 1453
Fnu4HI	GCNGC	8 cut(s)	448, 462, 513, 708, 1215, 1218, 2084, 2195
FokI	GGATG	3 cut(s)	191, 1223, 2518
FriOI	GRGCYC	2 cut(s)	63, 108
Fsp4HI	GCNGC	8 cut(s)	448, 462, 513, 708, 1215, 1218, 2084, 2195
FspBI	CTAG	6 cut(s)	524, 552, 812, 1280, 1946, 2781
GlaI	GCGC	2 cut(s)	687, 2597
GluI	GCNGC	8 cut(s)	448, 462, 513, 708, 1215, 1218, 2084, 2195
GsaI	CCCAGC	1 cut(s)	2201
GsuI	CTGGAG	3 cut(s)	1717, 1998, 2591
HaeII	RGCGCY	1 cut(s)	689
HaeIII	GGCC	7 cut(s)	380, 447, 721, 1374, 1822, 1999, 2474
HapII	CCGG	7 cut(s)	63, 176, 294, 1381, 1508, 1819, 1958
HhaI	GCGC	2 cut(s)	688, 2598
Hin6I	GCGC	2 cut(s)	686, 2596
HinP1I	GCGC	2 cut(s)	686, 2596
HindIII	AAGCTT	2 cut(s)	560, 603
HpaII	CCGG	7 cut(s)	63, 176, 294, 1381, 1508, 1819, 1958
HphI	GGTGA	2 cut(s)	1001, 2624
Hpy166II	GTNNAC	4 cut(s)	658, 1189, 1454, 2559
Hpy188I	TCNGA	8 cut(s)	253, 397, 486, 664, 1131, 2479, 2502, 2801
Hpy8I	GTNNAC	4 cut(s)	658, 1189, 1454, 2559
HpyAV	CCTTC	9 cut(s)	79, 94, 345, 507, 697, 922, 1403, 1633, 1992
HpyCH4III	ACNGT	6 cut(s)	123, 277, 368, 1164, 1195, 2410
HpyCH4IV	ACGT	2 cut(s)	1456, 2215
HpyF10VI	GCNNNNNNNGC	6 cut(s)	488, 750, 1244, 1325, 1586, 2604
HpySE526I	ACGT	2 cut(s)	1456, 2215
HspAI	GCGC	2 cut(s)	686, 2596
Kpn2I	TCCGGA	2 cut(s)	175, 1507
KroI	GCCGGC	1 cut(s)	1818
KroNI	GCCGGC	1 cut(s)	1820
Kzo9I	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
LguI	GCTCTTC	1 cut(s)	2661
LmnI	GCTCC	5 cut(s)	103, 634, 1585, 1942, 2191
Lsp1109I	GCAGC	7 cut(s)	448, 499, 694, 1201, 1204, 2070, 2206
LweI	GCATC	9 cut(s)	244, 280, 660, 949, 1201, 1288, 1315, 1636, 2732
MaeI	CTAG	6 cut(s)	524, 552, 812, 1280, 1946, 2781
MaeII	ACGT	2 cut(s)	1456, 2215
MaeIII	GTNAC	6 cut(s)	797, 1383, 1837, 1850, 2353, 2656
MalI	GATC	9 cut(s)	543, 618, 906, 1353, 1506, 1694, 2069, 2223, 2253
MboI	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
MfeI	CAATTG	1 cut(s)	1014
MflI	RGATCY	5 cut(s)	541, 616, 1351, 1504, 1692
MhlI	GDGCHC	3 cut(s)	63, 108, 412
MlyI	GAGTC	5 cut(s)	386, 476, 791, 2518, 2582
MmeI	TCCRAC	4 cut(s)	261, 369, 2184, 2780
Mph1103I	ATGCAT	2 cut(s)	406, 1330
MroI	TCCGGA	2 cut(s)	175, 1507
MroNI	GCCGGC	1 cut(s)	1818
MroXI	GAANNNNTTC	1 cut(s)	2451
MseI	TTAA	9 cut(s)	8, 536, 557, 885, 999, 1344, 2052, 2730, 2745
MslI	CAYNNNNRTG	1 cut(s)	1599
MspA1I	CMGCKG	2 cut(s)	512, 2197
MspCI	CTTAAG	1 cut(s)	998
MspI	CCGG	7 cut(s)	63, 176, 294, 1381, 1508, 1819, 1958
MspR9I	CCNGG	2 cut(s)	63, 2530
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	4 cut(s)	406, 493, 524, 1967
MvaI	CCWGG	1 cut(s)	2530
MwoI	GCNNNNNNNGC	6 cut(s)	488, 750, 1244, 1325, 1586, 2604
NaeI	GCCGGC	1 cut(s)	1820
NciI	CCSGG	1 cut(s)	63
NdeI	CATATG	3 cut(s)	1258, 1330, 2256
NdeII	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
NgoMIV	GCCGGC	1 cut(s)	1818
NlaIV	GGNNCC	2 cut(s)	67, 2208
NsiI	ATGCAT	2 cut(s)	406, 1330
NspI	RCATGY	6 cut(s)	408, 1818, 1937, 2325, 2378, 2593
PaeI	GCATGC	1 cut(s)	1818
PagI	TCATGA	1 cut(s)	1405
PciI	ACATGT	2 cut(s)	2321, 2589
PciSI	GCTCTTC	1 cut(s)	2661
PctI	GAATGC	4 cut(s)	406, 493, 524, 1967
PdiI	GCCGGC	1 cut(s)	1820
PdmI	GAANNNNTTC	1 cut(s)	2451
PfeI	GAWTC	7 cut(s)	1358, 1890, 1898, 1910, 1919, 2327, 2708
PinAI	ACCGGT	1 cut(s)	1380
PkrI	GCNGC	8 cut(s)	449, 463, 514, 709, 1216, 1219, 2085, 2196
PleI	GAGTC	5 cut(s)	386, 475, 790, 2517, 2581
PpsI	GAGTC	5 cut(s)	386, 475, 790, 2517, 2581
Ppu21I	YACGTR	1 cut(s)	2216
PscI	ACATGT	2 cut(s)	2321, 2589
PsiI	TTATAA	2 cut(s)	642, 942
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	2528
PspEI	GGTNACC	2 cut(s)	1850, 2656
PspFI	CCCAGC	1 cut(s)	2197
PspGI	CCWGG	1 cut(s)	2528
PspN4I	GGNNCC	2 cut(s)	67, 2208
PspPI	GGNCC	5 cut(s)	65, 133, 445, 1997, 2549
PstI	CTGCAG	1 cut(s)	1633
PstNI	CAGNNNCTG	3 cut(s)	1446, 2000, 2604
PsuI	RGATCY	5 cut(s)	541, 616, 1351, 1504, 1692
PvuII	CAGCTG	1 cut(s)	2197
RsaI	GTAC	4 cut(s)	434, 968, 2373, 2603
RsaNI	GTAC	4 cut(s)	433, 967, 2372, 2602
RseI	CAYNNNNRTG	1 cut(s)	1599
SacI	GAGCTC	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	2661
SaqAI	TTAA	9 cut(s)	8, 536, 557, 885, 999, 1344, 2052, 2730, 2745
SatI	GCNGC	8 cut(s)	448, 462, 513, 708, 1215, 1218, 2084, 2195
Sau3AI	GATC	9 cut(s)	541, 616, 904, 1351, 1504, 1692, 2067, 2221, 2251
Sau96I	GGNCC	5 cut(s)	65, 133, 445, 1997, 2549
SchI	GAGTC	5 cut(s)	386, 476, 791, 2518, 2582
ScrFI	CCNGG	2 cut(s)	63, 2530
SduI	GDGCHC	3 cut(s)	63, 108, 412
SfaNI	GCATC	9 cut(s)	244, 280, 660, 949, 1201, 1288, 1315, 1636, 2732
SfcI	CTRYAG	1 cut(s)	1629
SinI	GGWCC	3 cut(s)	65, 133, 2549
SmiMI	CAYNNNNRTG	1 cut(s)	1599
SmlI	CTYRAG	2 cut(s)	576, 998
SmoI	CTYRAG	2 cut(s)	576, 998
SpeI	ACTAGT	1 cut(s)	551
SphI	GCATGC	1 cut(s)	1818
SsiI	CCGC	3 cut(s)	448, 510, 2125
SspI	AATATT	1 cut(s)	1309
SspMI	CTAG	6 cut(s)	524, 552, 812, 1280, 1946, 2781
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	61, 2528
StyI	CCWWGG	2 cut(s)	646, 2563
TaaI	ACNGT	6 cut(s)	123, 277, 368, 1164, 1195, 2410
TaiI	ACGT	2 cut(s)	1459, 2218
TaqI	TCGA	3 cut(s)	903, 1951, 2726
TatI	WGTACW	3 cut(s)	432, 966, 2371
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	7 cut(s)	1358, 1890, 1898, 1910, 1919, 2327, 2708
Tru1I	TTAA	9 cut(s)	8, 536, 557, 885, 999, 1344, 2052, 2730, 2745
Tru9I	TTAA	9 cut(s)	8, 536, 557, 885, 999, 1344, 2052, 2730, 2745
TscAI	CASTG	5 cut(s)	126, 1122, 1198, 1908, 2415
TseI	GCWGC	7 cut(s)	461, 512, 707, 1214, 1217, 2083, 2194
TspRI	CASTG	5 cut(s)	126, 1122, 1198, 1908, 2415
Vha464I	CTTAAG	1 cut(s)	998
VpaK11BI	GGWCC	3 cut(s)	65, 133, 2549
XagI	CCTNNNNNAGG	2 cut(s)	455, 1992
XapI	RAATTY	3 cut(s)	127, 2100, 2119
XceI	RCATGY	6 cut(s)	408, 1818, 1937, 2325, 2378, 2593
XmiI	GTMKAC	3 cut(s)	657, 1188, 1453
XmnI	GAANNNNTTC	1 cut(s)	2451
XspI	CTAG	6 cut(s)	524, 552, 812, 1280, 1946, 2781
Zsp2I	ATGCAT	2 cut(s)	406, 1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.