Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008031

Physical Location & Seq

Genomic Coordinates Reverse (-)

11798237 .. 11798947

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0143900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTTAATACTGAATTCAACAGTATAGCAGAAAACCCGGCTTTGGACTTGTATCCCGATCACTTGCAATCCCAATTCAATCAGACTAATGAATGGATGTACGATAAGATAAATAACGGTGTCTATAAATGTGGGTTTGCCAAGAAGCAGGAGCCTTATGATGAGGCTGTGAAACAGTTGTATGAAGCTTTGGACAGATGTGAGGAGATACTTAGCAAGCAACGATACCTTTGTGGAAACACATTATCTGAAGCAGATATTCATTTGTTTGTGACTCTCATAAGATTTGATGAGGTTTATGCAGTCCACTTCAAGTGCAACAAGAAACTCCTGCGAGAGTACCCAAATCTGTTTAACTACACCAAGGACATTTTCCATGTTCCTGGAATGAGCAGCACAGTCCAGATGGATCACATCAAACGACACTACTATGGAAGCCATCCTTCTATCAATCCATTCGGGATAGTTCCTTCCGGCCCAAAAATCGACTACTCTTCTCCTCATGACAGAAACAAGTTTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0008194 GO:0008375 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010476 GO:0010646 GO:0010648 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0140096 GO:1901700 GO:1901701 GO:2000377

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_41 TPR_1 TPR_10 TPR_16 TPR_7 TPR_8

Protein Analysis

175

Amino Acids

20.47

Weight (kDa)

6.23

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	46 - 126	9.1e-11	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	52 - 121	1.2e-13	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	55 - 129	5.4e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11540 AT3G11540
fragaria_vesca	FvH4_6g19470 FvH4_6g19470 FvH4_6g19470 FvH4_6g19470
malus_domestica	MD12G1030800.v1.1 MD14G1031300.v1.1
prunus_persica	Prupe.7G101600_v2.0.a1 Prupe.7G101600_v2.0.a1
pyrus_communis	pycom12g02880 pycom14g02820
rosa_chinensis	RchiOBHm_Chr3g0474801
rosa_laevigata	RLG00000023896
rosa_multiflora	Rmu_sc0004848.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406850
rosa_rugosa	Rorug03G0143700 Rorug03G0143800 Rorug03G0143900
rosa_samantha	Rh3AG193600 Rh3BG223400 Rh3CG218300 Rh3DG219400
rosa_wichuraiana	Rw3G017640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	101, 341
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	3 cut(s)	19, 79, 313
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AlwI	GGATC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	400, 447
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	38
BfuI	GTATCC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	38, 384
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	38, 384
BpuMI	CCSGG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	102, 439
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	218, 489
BseXI	GCAGC	1 cut(s)	405
BshFI	GGCC	1 cut(s)	477
BsiSI	CCGG	2 cut(s)	38, 474
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	58, 409
BspANI	GGCC	1 cut(s)	477
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	58, 409
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	23, 119, 177, 400
Bst6I	CTCTTC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	102, 439
BstKTI	GATC	2 cut(s)	61, 412
BstMBI	GATC	2 cut(s)	58, 409
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	36, 382
BstV1I	GCAGC	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	102, 439
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	100, 340
CviAII	CATG	2 cut(s)	377, 503
CviJI	RGCY	6 cut(s)	41, 154, 167, 188, 438, 477
CviKI_1	RGCY	6 cut(s)	41, 154, 167, 188, 438, 477
CviQI	GTAC	2 cut(s)	100, 340
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	2 cut(s)	60, 411
DpnII	GATC	2 cut(s)	58, 409
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	2 cut(s)	380, 506
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FatI	CATG	2 cut(s)	376, 502
Fnu4HI	GCNGC	1 cut(s)	394
FokI	GGATG	2 cut(s)	109, 426
Fsp4HI	GCNGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	2 cut(s)	38, 474
Hin1II	CATG	2 cut(s)	380, 506
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	2 cut(s)	38, 474
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	84, 250
Hpy188III	TCNNGA	4 cut(s)	56, 403, 460, 503
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	453, 480
HpyCH4III	ACNGT	4 cut(s)	23, 119, 177, 400
HpyCH4V	TGCA	4 cut(s)	67, 302, 318, 524
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	380, 506
Kzo9I	GATC	2 cut(s)	58, 409
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	51, 134, 344, 369, 396, 416, 487
Lsp1109I	GCAGC	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	60, 411
MboI	GATC	2 cut(s)	58, 409
MboII	GAAGA	1 cut(s)	486
MluCI	AATT	2 cut(s)	14, 74
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	157, 196, 286, 510
MseI	TTAA	2 cut(s)	6, 354
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	2 cut(s)	38, 474
MspR9I	CCNGG	2 cut(s)	38, 384
MvaI	CCWGG	1 cut(s)	384
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	58, 409
NlaIII	CATG	2 cut(s)	380, 506
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	502
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	395
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	476
RsaI	GTAC	2 cut(s)	101, 341
RsaNI	GTAC	2 cut(s)	100, 340
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	6, 354
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	2 cut(s)	58, 409
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	38, 384
SetI	ASST	3 cut(s)	190, 231, 297
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	2 cut(s)	14, 74
StyD4I	CCNGG	2 cut(s)	36, 382
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	4 cut(s)	23, 119, 177, 400
TaqI	TCGA	1 cut(s)	486
TasI	AATT	2 cut(s)	14, 74
Tru1I	TTAA	2 cut(s)	6, 354
Tru9I	TTAA	2 cut(s)	6, 354
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	105, 198, 251
XapI	RAATTY	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.