AT3G11570

trichome birefringence-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009484
Physical Location & Seq
Reverse (-)
3645022 .. 3647542
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11570.1

Sequence Viewer

Length: 1284 bp
ATGGATCATCATCAAGAATCAAATCCTCTGAAGGAGATTTTCTCTCTATCTTCGTCTCCTTTCTTCTCAACGTTGAAAATCAAGAAACATATATTTGTTGGGATCTCTCTTCTCATCACCTTCCTAATATTCTCTGTTATCGTCGTTGATCTTGCCGGCTTCGAGCCTCATCTCTGTTTCGGATTCTTATTGTCGCCCCGAACCCTAACGAAGGAAAGAGGAAACGACGACGTATGCGACTATTCATACGGAAGATGGGTTCGTCGACGCCGTGATGTGGACGAAACCTCTTATTATGGAGAAGAGTGTCGGTTTCTGGATCCTGGTTTTCGTTGTCTGAATAATGGAAGAAAAGATTCTGGTTTTCGACAATGGCGATGGCAACCACATGGCTGCGATCTTCCACGATTTAACGCAAGTGATTTTCTGGAGAGGAGTCGGAATGGGAGGATTGTGTTCGTCGGAGATTCTATCGGAAGAAACCAATGGGAATCTCTTCTGTGTATGCTTTCACAAGCAGTGTCTAATAAATCTGAGATATATGAAGTTAATGGAAACCCTATAAGCAAGCATAAGGGTTTCCTTTCGATGCGATTTCCGGAACAAAACCTAACCGTTGAATATCATAGAACACCGTTTCTGGTTGTGGTTGGTCGGCCTCCTGAGAACTCACCGGTAGATGTCAAAATGACTGTTAGAGTCGATGAGTTTAACTGGCAGTCCAAAAAATGGGTCGGCTCTGATGTTCTAGTCTTCAATACAGGGCATTGGTGGAACGAAGACAAGACCTTTATCGCGGGTTGCTATTTTCAGGAGGGAGGGAAATTGAACAAGACGATGGGAGTAATGGAGGGATTTGAGAAGTCTTTAAAGACATGGAAGTCATGGGTTTTAGAGAGACTAGATTCTGAGAGGAGTCATGTCTTCTTCAGAAGCTTCTCTCCTGTACACTACAGGAATGGGACATGGAACTTGGGTGGTTTGTGTGATGCAGATACAGAGCCAGAGACTGATATGAAGAAAATGGAACCTGACCCTATCCACAACAATTATATTTCTCAAGCAATCCAAGAAATGAGATATGAACATAGTAAGGTTAAGTTTCTGAACATTACATATCTGACCGAGTTCAGGAAAGATGCTCATCCTTCGCGGTATCGAGAACCGGGAACTCCTGAAGATGCTCCTCAAGACTGCAGTCACTGGTGCTTACCCGGAGTACCGGACACATGGAACGAGATTCTCTATGCGCAGCTTTTGGCAATGAATTACCGAACAAAGTGA

Protein Analysis

427

Amino Acids

49.85

Weight (kDa)

6.92

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 78 - 133 1.6e-17 PMR5 N terminal Domain
PC-Esterase PF13839 134 - 417 1.3e-98 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica Prupe.7G100700_v2.0.a1
pyrus_communis pycom12g02960
rosa_chinensis RchiOBHm_Chr3g0474891
rosa_laevigata RLG00000023883
rosa_multiflora Rmu_sc0008866.1_g000002
rosa_roxburghii Rroxscaffold_6G00406760
rosa_rugosa Rorug03G0145200
rosa_samantha Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana Rw3G017730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 880
Acc16I TGCGCA 1 cut(s) 1251
AccB7I CCANNNNNTGG 1 cut(s) 729
AccI GTMKAC 1 cut(s) 265
AccII CGCG 2 cut(s) 797, 1153
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 2 cut(s) 797, 1153
AclI AACGTT 1 cut(s) 71
AclWI GGATC 4 cut(s) 12, 110, 314, 327
AcuI CTGAAG 3 cut(s) 50, 913, 1197
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 2 cut(s) 948, 1221
AfiI CCNNNNNNNGG 4 cut(s) 211, 277, 729, 1131
AgeI ACCGGT 1 cut(s) 673
AgsI TTSAA 4 cut(s) 76, 620, 757, 829
AjnI CCWGG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 2 cut(s) 936, 1255
AluI AGCT 2 cut(s) 936, 1255
Alw26I GTCTC 3 cut(s) 60, 892, 1001
AlwI GGATC 4 cut(s) 12, 110, 314, 327
AlwNI CAGNNNCTG 2 cut(s) 1010, 1203
Aor13HI TCCGGA 1 cut(s) 598
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 2 cut(s) 393, 1252
ArsI GACNNNNNNTTYG 2 cut(s) 717, 749
AsiGI ACCGGT 1 cut(s) 673
Asp700I GAANNNNTTC 2 cut(s) 355, 495
AspLEI GCGC 1 cut(s) 1252
AsuC2I CCSGG 2 cut(s) 1167, 1215
AsuHPI GGTGA 2 cut(s) 109, 663
BamHI GGATCC 1 cut(s) 319
BbsI GAAGAC 3 cut(s) 745, 786, 916
BbvI GCAGC 2 cut(s) 380, 1264
BccI CCATC 3 cut(s) 249, 372, 832
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 2 cut(s) 1167, 1215
BcoDI GTCTC 3 cut(s) 60, 892, 1001
BfaI CTAG 2 cut(s) 749, 902
BfmI CTRYAG 2 cut(s) 952, 1195
BisI GCNGC 2 cut(s) 394, 1253
BlsI GCNGC 2 cut(s) 395, 1254
Bme1390I CCNGG 3 cut(s) 324, 1167, 1215
BmiI GGNNCC 2 cut(s) 321, 1029
BmrFI CCNGG 3 cut(s) 324, 1167, 1215
BmsI GCATC 4 cut(s) 579, 979, 1129, 1171
BoxI GACNNNNGTC 1 cut(s) 1197
BpiI GAAGAC 3 cut(s) 745, 786, 916
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 1 cut(s) 449
BpuEI CTTGAG 2 cut(s) 1044, 1173
BpuMI CCSGG 2 cut(s) 1167, 1215
BsaBI GATNNNNATC 2 cut(s) 9, 1143
BsaHI GRCGYC 1 cut(s) 268
BsaWI WCCGGW 3 cut(s) 598, 673, 1222
Bsc4I CCNNNNNNNGG 4 cut(s) 211, 277, 729, 1131
Bse118I RCCGGY 2 cut(s) 155, 673
Bse1I ACTGG 2 cut(s) 719, 1208
Bse3DI GCAATG 1 cut(s) 1269
Bse8I GATNNNNATC 2 cut(s) 9, 1143
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 1144
BseJI GATNNNNATC 2 cut(s) 9, 1143
BseLI CCNNNNNNNGG 4 cut(s) 211, 277, 729, 1131
BseMI GCAATG 1 cut(s) 1269
BseMII CTCAG 3 cut(s) 525, 654, 900
BseNI ACTGG 2 cut(s) 719, 1208
BseRI GAGGAG 3 cut(s) 448, 928, 1176
BseXI GCAGC 2 cut(s) 380, 1264
Bsh1236I CGCG 2 cut(s) 797, 1153
BshFI GGCC 1 cut(s) 658
BshTI ACCGGT 1 cut(s) 673
BsiSI CCGG 6 cut(s) 156, 599, 674, 1166, 1215, 1223
BslFI GGGAC 1 cut(s) 976
BslI CCNNNNNNNGG 4 cut(s) 211, 277, 729, 1131
BsmAI GTCTC 3 cut(s) 60, 892, 1001
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 976
BsnI GGCC 1 cut(s) 658
Bsp13I TCCGGA 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 946
Bsp143I GATC 5 cut(s) 4, 102, 148, 319, 397
BspACI CCGC 2 cut(s) 797, 1153
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 3 cut(s) 526, 655, 901
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 2 cut(s) 797, 1153
BspLI GGNNCC 2 cut(s) 321, 1029
BspMAI CTGCAG 1 cut(s) 1199
BspPI GGATC 4 cut(s) 12, 110, 314, 327
BsrDI GCAATG 1 cut(s) 1269
BsrFI RCCGGY 2 cut(s) 155, 673
BsrGI TGTACA 1 cut(s) 946
BsrI ACTGG 2 cut(s) 719, 1208
BssAI RCCGGY 2 cut(s) 155, 673
BssMI GATC 5 cut(s) 4, 102, 148, 319, 397
BssNI GRCGYC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 616, 636, 694
Bst6I CTCTTC 3 cut(s) 114, 297, 501
BstACI GRCGYC 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 946
BstC8I GCNNGC 2 cut(s) 157, 569
BstDEI CTNAG 3 cut(s) 534, 663, 909
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 1144
BstFNI CGCG 2 cut(s) 797, 1153
BstHHI GCGC 1 cut(s) 1252
BstKTI GATC 5 cut(s) 7, 105, 151, 322, 400
BstMAI GTCTC 3 cut(s) 60, 892, 1001
BstMBI GATC 5 cut(s) 4, 102, 148, 319, 397
BstNI CCWGG 1 cut(s) 324
BstPAI GACNNNNGTC 1 cut(s) 1197
BstSCI CCNGG 3 cut(s) 322, 1165, 1213
BstSFI CTRYAG 2 cut(s) 952, 1195
BstUI CGCG 2 cut(s) 797, 1153
BstV1I GCAGC 2 cut(s) 380, 1264
BstV2I GAAGAC 3 cut(s) 745, 786, 916
BstX2I RGATCY 2 cut(s) 102, 319
BstYI RGATCY 2 cut(s) 102, 319
BsuRI GGCC 1 cut(s) 658
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 1144
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 525, 1201
Cac8I GCNNGC 2 cut(s) 157, 569
CaiI CAGNNNCTG 2 cut(s) 1010, 1203
CfoI GCGC 1 cut(s) 1252
Cfr10I RCCGGY 2 cut(s) 155, 673
CseI GACGC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 947, 1220
CspAI ACCGGT 1 cut(s) 673
CviAII CATG 6 cut(s) 389, 876, 885, 920, 966, 1230
CviJI RGCY 8 cut(s) 159, 166, 393, 658, 738, 936, 1003, 1255
CviKI_1 RGCY 8 cut(s) 159, 166, 393, 658, 738, 936, 1003, 1255
CviQI GTAC 2 cut(s) 947, 1220
DdeI CTNAG 3 cut(s) 534, 663, 909
DpnI GATC 5 cut(s) 6, 104, 150, 321, 399
DpnII GATC 5 cut(s) 4, 102, 148, 319, 397
DraI TTTAAA 1 cut(s) 870
DrdI GACNNNNNNGTC 1 cut(s) 880
DseDI GACNNNNNNGTC 1 cut(s) 880
Eam1104I CTCTTC 3 cut(s) 114, 297, 501
EarI CTCTTC 3 cut(s) 114, 297, 501
Eco57I CTGAAG 3 cut(s) 50, 913, 1197
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 6 cut(s) 392, 879, 888, 923, 969, 1233
FaqI GGGAC 1 cut(s) 976
FatI CATG 6 cut(s) 388, 875, 884, 919, 965, 1229
FauI CCCGC 1 cut(s) 790
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 394, 1253
FokI GGATG 1 cut(s) 1131
Fsp4HI GCNGC 2 cut(s) 394, 1253
FspBI CTAG 2 cut(s) 749, 902
FspI TGCGCA 1 cut(s) 1251
GlaI GCGC 1 cut(s) 1251
GluI GCNGC 2 cut(s) 394, 1253
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 1 cut(s) 658
HapII CCGG 6 cut(s) 156, 599, 674, 1166, 1215, 1223
HgaI GACGC 1 cut(s) 276
HhaI GCGC 1 cut(s) 1252
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 6 cut(s) 392, 879, 888, 923, 969, 1233
Hin6I GCGC 1 cut(s) 1250
HinP1I GCGC 1 cut(s) 1250
HincII GTYRAC 1 cut(s) 266
HindII GTYRAC 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 934
HpaII CCGG 6 cut(s) 156, 599, 674, 1166, 1215, 1223
HphI GGTGA 2 cut(s) 109, 663
Hpy166II GTNNAC 3 cut(s) 266, 280, 949
Hpy8I GTNNAC 3 cut(s) 266, 280, 949
Hpy99I CGWCG 6 cut(s) 146, 230, 233, 267, 270, 464
HpyAV CCTTC 4 cut(s) 25, 130, 205, 1158
HpyCH4III ACNGT 3 cut(s) 616, 636, 694
HpyCH4IV ACGT 2 cut(s) 71, 231
HpyCH4V TGCA 2 cut(s) 992, 1197
HpyF3I CTNAG 3 cut(s) 534, 663, 909
HpySE526I ACGT 2 cut(s) 71, 231
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 6 cut(s) 392, 879, 888, 923, 969, 1233
HspAI GCGC 1 cut(s) 1250
Kpn2I TCCGGA 1 cut(s) 598
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 5 cut(s) 4, 102, 148, 319, 397
LmnI GCTCC 1 cut(s) 1189
Lsp1109I GCAGC 2 cut(s) 380, 1264
LweI GCATC 4 cut(s) 579, 979, 1129, 1171
MaeI CTAG 2 cut(s) 749, 902
MaeII ACGT 2 cut(s) 71, 231
MaeIII GTNAC 1 cut(s) 1199
MalI GATC 5 cut(s) 6, 104, 150, 321, 399
MboI GATC 5 cut(s) 4, 102, 148, 319, 397
MflI RGATCY 2 cut(s) 102, 319
MluCI AATT 3 cut(s) 824, 1048, 1267
MlyI GAGTC 3 cut(s) 445, 708, 925
MmeI TCCRAC 2 cut(s) 419, 442
MroI TCCGGA 1 cut(s) 598
MroNI GCCGGC 1 cut(s) 155
MroXI GAANNNNTTC 2 cut(s) 355, 495
MseI TTAA 5 cut(s) 411, 549, 711, 869, 1098
MspI CCGG 6 cut(s) 156, 599, 674, 1166, 1215, 1223
MspR9I CCNGG 3 cut(s) 324, 1167, 1215
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 2 cut(s) 797, 1153
NaeI GCCGGC 1 cut(s) 157
NciI CCSGG 2 cut(s) 1167, 1215
NdeII GATC 5 cut(s) 4, 102, 148, 319, 397
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 6 cut(s) 392, 879, 888, 923, 969, 1233
NlaIV GGNNCC 2 cut(s) 321, 1029
NmuCI GTSAC 1 cut(s) 1199
NsbI TGCGCA 1 cut(s) 1251
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 268, 373
PdiI GCCGGC 1 cut(s) 157
PdmI GAANNNNTTC 2 cut(s) 355, 495
PfeI GAWTC 7 cut(s) 17, 183, 356, 467, 491, 905, 1240
PflMI CCANNNNNTGG 1 cut(s) 729
PinAI ACCGGT 1 cut(s) 673
PkrI GCNGC 2 cut(s) 395, 1254
PleI GAGTC 3 cut(s) 444, 707, 924
PpsI GAGTC 3 cut(s) 444, 707, 924
PshAI GACNNNNGTC 1 cut(s) 1197
Psp1406I AACGTT 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 321, 1029
PstI CTGCAG 1 cut(s) 1199
PstNI CAGNNNCTG 2 cut(s) 1010, 1203
PsuI RGATCY 2 cut(s) 102, 319
RsaI GTAC 2 cut(s) 948, 1221
RsaNI GTAC 2 cut(s) 947, 1220
SalI GTCGAC 1 cut(s) 264
SaqAI TTAA 5 cut(s) 411, 549, 711, 869, 1098
SatI GCNGC 2 cut(s) 394, 1253
Sau3AI GATC 5 cut(s) 4, 102, 148, 319, 397
SchI GAGTC 3 cut(s) 445, 708, 925
ScrFI CCNGG 3 cut(s) 324, 1167, 1215
SfaNI GCATC 4 cut(s) 579, 979, 1129, 1171
SfcI CTRYAG 2 cut(s) 952, 1195
SgrDI CGTCGACG 1 cut(s) 264
SmlI CTYRAG 2 cut(s) 1059, 1188
SmoI CTYRAG 2 cut(s) 1059, 1188
Sse9I AATT 3 cut(s) 824, 1048, 1267
SsiI CCGC 2 cut(s) 797, 1153
SspI AATATT 1 cut(s) 129
SspMI CTAG 2 cut(s) 749, 902
StyD4I CCNGG 3 cut(s) 322, 1165, 1213
TaaI ACNGT 3 cut(s) 616, 636, 694
TaiI ACGT 2 cut(s) 74, 234
TaqI TCGA 6 cut(s) 162, 265, 367, 587, 702, 1159
TaqII GACCGA 1 cut(s) 1139
TasI AATT 3 cut(s) 824, 1048, 1267
TatI WGTACW 1 cut(s) 946
TfiI GAWTC 7 cut(s) 17, 183, 356, 467, 491, 905, 1240
Tru1I TTAA 5 cut(s) 411, 549, 711, 869, 1098
Tru9I TTAA 5 cut(s) 411, 549, 711, 869, 1098
TscAI CASTG 2 cut(s) 525, 1208
TseFI GTSAC 1 cut(s) 1199
TseI GCWGC 2 cut(s) 393, 1252
Tsp45I GTSAC 1 cut(s) 1199
TspDTI ATGAA 5 cut(s) 234, 558, 1031, 1098, 1280
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 2 cut(s) 525, 1208
Van91I CCANNNNNTGG 1 cut(s) 729
XagI CCTNNNNNAGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 2 cut(s) 355, 495
XspI CTAG 2 cut(s) 749, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.